dpollard's colin_presented [12 articles] Export

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	In vivo dynamics of RNA polymerase II transcription [My Copy] Nat Struct Mol Biol, Vol. 14, No. 9. (5 September 2007), pp. 796-806. by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, et al.Yehuda Brody, Shailesh M. Shenoy, Robert D. Phair, Robert H. Singer posted to colin_presented eisen_journal_club modeling round_robin transcription by dpollard on 2007-11-17 00:11:00 as along with 5 people and 3 groups jjray dchughes madhadron cwbrown margaritis EisenLab G4ID Genetics-of-Gambling
	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to cis_regulatory_elements colin_presented conservation eisen_journal_club grammar in_depth regulatory_evolution round_robin stew_presented by dpollard on 2007-10-29 18:57:23 as along with 10 people and 2 groups pradiptaray djkt joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol emptyhb EisenLab cis-regulatory-evolution
	Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (7 September 2007), e175. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted to bacteria colin_presented eisen_journal_club protein_function_evolution round_robin transcription_factor by dpollard on 2007-10-29 18:46:52 as along with 11 people and 3 groups Jporci druvus treangen carlk operon dquest djkt zwang cabbagezs heliopais blobbybirdman EisenLab cis-regulatory-evolution Myxo group
	Predicting evolutionary patterns of mammalian teeth from development. [My Copy] Nature, Vol. 449, No. 7161. (27 September 2007), pp. 427-432. by Kathryn D. Kavanagh, Alistair R. Evans, Jukka Jernvall posted to colin_presented eisen_journal_club round_robin by dpollard on 2007-10-09 18:17:09 as along with 2 people and 1 group cparada smbe2008 EisenLab
	Switching of the core transcription machinery during myogenesis. [My Copy] Genes Dev (17 August 2007) by Maria Divina E D. Deato, Robert Tjian posted to colin_presented eisen_journal_club round_robin by dpollard on 2007-08-25 00:47:19 as along with 1 group EisenLab
	Co-evolution of transcription factors and their targets depends on mode of regulation [My Copy] Genome Biology, Vol. 7 (19 July 2006), R62. by Ruth Hershberg, Hanah Margalit posted to coevolution colin_presented eisen_journal_club round_robin transcription_factor by dpollard on 2007-06-15 23:00:14 as along with 4 people and 2 groups indigoviolet cjeans cisevol PetrovLab EisenLab cis-regulatory-evolution
	Probing transcription factor dynamics at the single-molecule level in a living cell. [My Copy] Science (New York, N.Y.), Vol. 316, No. 5828. (25 May 2007), pp. 1191-1194. by Johan Elf, Gene-Wei W. Li, X. Sunney Xie posted to colin_presented dynamics eisen_journal_club in_depth kenetics round_robin transcription_factor by dpollard on 2007-06-04 22:51:38 as along with 9 people and 3 groups fierykylin OliverHarriman jjray madhadron balabu nickluscombe samjlord austin ras EisenLab EBI-regulation moernerlab
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nature genetics, Vol. 39, No. 6. (21 June 2007), pp. 730-732. by Duncan T. Odom, Robin D. Dowell, Elizabeth S. Jacobsen, et al.William Gordon, Timothy W. Danford, Kenzie D. MacIsaac, P. Alexander Rolfe, Caitlin M. Conboy, David K. Gifford, Ernest Fraenkel posted to colin_presented eisen_journal_club evolution gene-expression human in_depth_suggestion mouse round_robin tissue-specific by dpollard on 2007-06-01 00:07:40 as along with 13 people and 4 groups vingron ajaymalik fenghezi gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown yevishere gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	In vitro analysis of DNA-protein interactions by proximity ligation. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072. by S. M. Gustafsdottir, J. Schlingemann, A. Rada-Iglesias, et al.E. Schallmeiner, M. Kamali-Moghaddam, C. Wadelius, U. Landegren posted to binding colin_presented eisen_journal_club method round_robin transcription_factor by dpollard on 2007-03-23 19:28:14 as along with 2 people and 1 group guhjy zwang EisenLab
	Splicing and the Evolution of Proteins in Mammals [My Copy] PLoS Biol, Vol. 5, No. 2. (6 February 2007), e14. by Joanna L. Parmley, Araxi O. Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D. Hurst posted to colin_presented eisen_journal_club round_robin by dpollard on 2007-02-14 00:18:17 as along with 8 people and 7 groups mtruksa operon aalibes dchughes kehan stajich jwestbrook gileswl biodiversity_conservation Bioinformatics EisenLab G4ID King_Lab GrassBase Genetics-of-Gambling
	A "Silent" Polymorphism in the MDR1 Gene Changes Substrate Specificity [My Copy] Science, Vol. 315, No. 5811. (26 January 2007), pp. 525-528. by Chava Kimchi-Sarfaty, Jung M. Oh, In-Wha Kim, et al.Zuben E. Sauna, Anna M. Calcagno, Suresh V. Ambudkar, Michael M. Gottesman posted to round_robin eisen_journal_club colin_presented by dpollard on 2007-02-03 03:48:39 as along with 10 people and 3 groups ajbattle songpku koller bicko gpalidwor dchughes cwbrown massivemayhem shawnh msafi EisenLab G4ID Genetics-of-Gambling
	A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors [My Copy] Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237. by Sebastian J. Maerkl, Stephen R. Quake posted to stuart_presented round_robin eisen_journal_club colin_presented by dpollard on 2007-01-19 21:07:06 as along with 9 people and 2 groups absterga jjray emilyhare adepace aswin skoch3 blobbybirdman emptyhb brant EisenLab Koch_Lab

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drosophila	119
eisen_journal_club	115
round_robin	94
evolution	71
method	56
cis_regulatory_elements	51
gene	45
prediction	43
expression	40
binding_site	32
transcription	27
yeast	25
alignment	25
review	24
development	22
variation	22
in_depth_suggestion	20
transcription_factor	19
motif	18
selection	18
phylogeny	18
turnover	17
expression_pattern	17
binding	16
rockman_journal_club	16
regulatory_evolution	16
genome_architecture	16
polymorphism	16
conserved	15
dan_presented	15
rate	15
adaptive	15
network	15
qtl	15
modeling	14
human	14
gene_expression	14
devin_presented	13
noncoding	13
genome_size	13
indels	12
population_genetics	12
colin_presented	12
grammar	12
c_elegans	12
pattern	12
chip_chip	11
promoter	11
rnai	11
in_depth	11
embryonic_patterning	10
regulatory_sequence_evolution	10
rich_presented	10
allele-specific	9
model	9
expression_divergence	9
insect	9
association_mapping	9
eqtl	9
angela_presented	8
stuart_presented	8
duplication	8
mammal	8
ab_initio	8
small_rnas	8
regulatory_sequence	8
venky_presented	8
alignment_accuracy	8
pwm	7
chromatin	7
speciation	7
adaptation	7
regulation	7
matt_presented	7
protein	7
lab_library	7
constraint	7
embryo	6
clustering	6
expression_polymorphism	6
regulatory_polymorphism	6
annotation	6
crm	6
emily_presented	6
conservation	6
array	6
comparative	6
epistasis	6
population_structure	5
enhancer	5
seminal_paper	5
nucleosome	5
mutation	5
structure	5
system	5
vertebrate	5
brain	5
motif_detection	5
recombination	5
regulatory_network	5
evo_devo	5
transposable_elements	5
insulators	5
reconstruction	5
bacteria	4
te	4
lenny_presented	4
brant_presented	4
insects	4
gene_family	4
nervous	4
indel	4
environment	4
worms	4
neuro	4
dynamics	4
genome_wide	4
snps	4
chromatin_modification	4
discovery	4
spacing	3
dominance	3
enhanceosome	3
accuracy	3
genomic	3
argonaute	3
mechanism	3
whole_genome	3
genome	3
mapping	3
stew_presented	3
intergenic	3
genome_sequence	3
correlation	3
noncoding_dna	3
effect_size	3
tree	3
experimental_evolution	3
comparative_genomics	3
affinity	3
multiple_alignment	3
mouse	3
test_for_selection	3
microrna	3
nematode	3
coactivator	3
morphological_evolution	3
fitness	3
neutral	3
cis_vs_trans	3
noncoding_transcription	2
corepression	2
histone	2
non-essential	2
placticity	2
length	2
translation_rate	2
hitchhiking	2
meiosis	2
vertibrates	2
binding_site_alignment	2
parameter_estimation	2
noncoding_rna	2
hypersensitive	2
database	2
association	2
kenetics	2
positive_selection	2
coexpression	2
pseudogene	2
color_variation	2
hybrid	2
hox	2
inversion	2
repression	2
modularity	2
protein_function_evolution	2
purifying	2
gradient	2
concatonation	2
pigmentation	2
adaptive_evolution	2
composition	2
bootstrap	2
loss	2
in-depth	2
rna	2
cis	2
gene_tree	2
linkage	2
3utr	2
sechellia	2
sequence_specificity	2
complex_trait	2
proteomics	2
divergence_estimation	2
convergent	2
website	2
germline	2
gene_prediction	2
lineage_specific	2
specific	2
rules	1
eukaryote	1
low_frequency	1
slightly_deleterious_mutations	1
protein_dna_interaction	1
metazoan	1
affy_array	1
theory	1
body	1
codon_usage	1
energy_landscape	1
genome_structure	1
tissue_specific	1
segmentation	1
co_dominance	1
biochemical	1
domestication	1
sequencing_error	1
karyotype	1
snp	1
americana	1
anterior_posterior	1
antiviral	1
cutoff	1
timing	1
chip_seq	1
steric_repression	1
natural_variation	1
synteny	1
genetic_interactions	1
sorting	1
parallel_evolution	1
heterogeneity	1
formation	1
sequence_properties	1
noise	1
ap_x_dv	1
substitution_rate_variation	1
imprinting	1
neural	1
experimental	1
amino_acid	1
false_positive	1
multiple_testing	1
in_situ	1
ftz	1
life	1
sequencing_technology	1
maternal	1
next_gen_sequencing	1
browser	1
micro_array	1
454	1
symbiont	1
x_vs_autosomes	1
scaling	1
morphology	1
intron	1
structural_variation	1
illumina_beads	1
gene_by_environment_interaction	1
helical_phasing	1
cis_reg_polymorphism	1
encode	1
physical	1
genetic_screen	1
natural_selection	1
fst	1
qst	1
regular_expressions	1
lineage	1
heart	1
post_transcriptional_modification	1
tribolium	1
experssion_pattern	1
acid	1
sex	1
properties	1
targets	1
coevolution	1
horizontal_transfer	1
chimp	1
odorant	1
threshold	1
semi_dominance	1
non-neutral	1
domains	1
gwas	1
gc_content	1
trait_decomposition	1
bristle	1
simulation	1
dnasei	1
response	1
intron_evolution	1
rnp	1
haplotype_inference	1
diffusion	1
nonstationary	1
even-skipped	1
paralog_divergence	1
neo-y	1
plants	1
concordance	1
gene_function_evolution	1
tissue-specific	1
extension	1
short	1
similarity	1
integration	1
pirna	1
fish	1
cgh	1
advanced_intercross	1
virilis	1
not_recommended	1
demography	1
base	1
rna_structure	1
markov	1
biophysical_model	1
trait_covariance	1
matrix	1
zygotic	1
germ	1
data	1
interval_mapping	1
solexa	1
paleoecology	1
strains	1
chimpanzee	1
inbred_lines	1
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dn_ds_ratio	1
antisense	1
amino	1
domain	1
lethality	1
extrinsic	1
mutational_load	1
heterotachy	1
computational	1
phenotype	1
weak	1
x_inactivation	1
plan	1
danr_presented	1
genetic	1
multi-copy	1
sperm	1
rapid	1
genealogy	1
massively_parallel_signature_sequencing	1
paralog	1
dosage_compensation	1
in_vivo	1
specialization	1
cnv	1
bee	1
background_selection	1
cognative_evolution	1
splicing	1
degredation	1
cofactor	1
assembly	1
in_vitro	1
detection	1
gene_vs_species_tree	1
gene-expression	1
range	1
tree_topology	1
disease	1

dpollard's colin_presented [12 articles] Export

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