dpollard's variation [22 articles] Export

Recent papers added to dpollard's library classified by the tag variation. You can also see everyone's variation.

	Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast. [My Copy] Pac Symp Biocomput (2008), pp. 489-500. by R. W. Lusk, M. B. Eisen posted to affinity binding_site transcription_factor variation yeast by dpollard on 2008-02-01 06:19:08 as along with 3 people and 2 groups lusk maximilianh caseybrown EisenLab cis-regulatory-evolution
	The Evolution of Transcriptional Regulation in Eukaryotes [My Copy] Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419. by Gregory A. Wray, Matthew W. Hahn, Ehab Abouheif, et al.James P. Balhoff, Margaret Pizer, Matthew V. Rockman, Laura A. Romano posted to cis_regulatory_elements regulatory_evolution review variation by dpollard on 2007-11-08 00:23:59 as along with 11 people and 5 groups athma provero wrowell ana adepace nickluscombe anatiferous mimulus_99 cisevol emptyhb emmahe structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
	The evolutionary significance of cis-regulatory mutations [My Copy] Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216. by Gregory A. Wray posted to cis_regulatory_elements polymorphism regulatory_evolution review variation by dpollard on 2007-11-08 00:12:33 as along with 9 people and 4 groups athma maximilianh provero brant dchughes lusk mimulus_99 cisevol emptyhb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	Consistent Patterns of Rate Asymmetry and Gene Loss Indicate Widespread Neofunctionalization of Yeast Genes After Whole-Genome Duplication [My Copy] Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1341-1350. by Kevin P. Byrne, Kenneth H. Wolfe posted to duplication gene genome rate turnover variation by dpollard on 2007-03-26 08:01:28 as along with 3 people and 1 group gjuggler echinotrix stajich EisenLab
	Posttranscriptional Expression Regulation: What Determines Translation Rates? [My Copy] PLoS Comput Biol, Vol. 3, No. 3. (23 March 2007), e57. by Regina Brockmann, Andreas Beyer, Jürgen J. Heinisch, Thomas Wilhelm posted to translation_rate variation by dpollard on 2007-03-23 00:27:06 as along with 2 people and 1 group dayjm gpalidwor EisenLab
	Genetics of global gene expression [My Copy] Nature Reviews Genetics, Vol. 7, No. 11., pp. 862-872. by Matthew V. Rockman, Leonid Kruglyak posted to association_mapping eisen_journal_club eqtl gene_expression in_depth qtl variation by dpollard on 2007-03-15 00:55:53 as along with 17 people and 10 groups roys tardigrade balicea dchughes nickluscombe neveaire aswin qfwills ealloza giovanni mlovell grahamc lp2 emarker natstreet mimulus_99 guhjy Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID EBI-regulation BioinfoCIPF GeschwindLab Genetics-of-Gambling
	Conserved sequences and the evolution of gene regulatory signals. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 6. (December 2005), pp. 628-633. by M. D. Adams posted to binding_site evolution regulatory_sequence transcription_factor turnover variation by dpollard on 2007-03-15 00:22:24 as along with 2 people and 1 group cconboy lusk EisenLab
	Evolution of cis-regulatory sequence and function in Diptera [My Copy] Heredity, Vol. aop, No. current. by P. J. Wittkopp, posted to evolution prediction regulatory_sequence structure variation by dpollard on 2007-03-15 00:20:50 as along with 6 people and 2 groups rouault indigoviolet adepace emmahe cisevol emptyhb EisenLab cis-regulatory-evolution
	Functional variation and evolution of non-coding DNA [My Copy] Current Opinion in Genetics & Development In Genomes and evolution, Vol. 16, No. 6. (December 2006), pp. 559-564. by C. Bird, B. Stranger, E. Dermitzakis posted to evolution noncoding_dna regulatory_sequence variation by dpollard on 2007-03-15 00:18:50 as along with 9 people and 4 groups jrhill jameswasmuth dchughes adepace lusk sujaikumar candypmcg Stew cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	How repeatable are associations between polymorphisms in achaete-scute and bristle number variation in Drosophila? [My Copy] Genetics (4 February 2007) by Jonathan D D. Gruber, Anne Genissel, Stuart J J. Macdonald, Anthony D D. Long posted to variation polymorphism bristle association by dpollard on 2007-02-10 01:26:51 as along with 2 people and 1 group jbsaltz mimulus_99 EisenLab
	Selection, recombination and demographic history in Drosophila miranda. [My Copy] Genetics (8 October 2006) by Doris Bachtrog, Peter Andolfatto posted to adaptive demography drosophila polymorphism protein recombination selection variation by dpollard on 2006-10-18 20:03:34 as along with 1 group EisenLab
	Cis-regulatory variations: A study of SNPs around genes showing cis-linkage in segregating mouse populations [My Copy] BMC Genomics, Vol. 7 (15 September 2006), 235. by Debraj Guhathakurta, Tao Xie, Manish Anand, et al.Stephen W. Edwards, Guoya Li, Susana Wang, Eric E. Schadt posted to cis gene linkage mouse noncoding polymorphism regulation variation by dpollard on 2006-09-30 00:25:03 as along with 4 people and 1 group caseybrown maximilianh adepace natstreet EisenLab
	An initial map of insertion and deletion (INDEL) variation in the human genome. [My Copy] Genome Res, Vol. 16, No. 9. (September 2006), pp. 1182-1190. by Ryan E E. Mills, Christopher T T. Luttig, Christine E E. Larkins, et al.Adam Beauchamp, Circe Tsui, W Stephen S. Pittard, Scott E E. Devine posted to human indel polymorphism variation by dpollard on 2006-09-06 01:05:45 as along with 4 people and 2 groups ilyashl bpb ealloza jackjackjjj EisenLab BioinfoCIPF
	Estimating Selection Pressures from Limited Comparative Data. [My Copy] Mol Biol Evol (5 June 2006) by Joshua B B. Plotkin, Jonathan Dushoff, Michael M M. Desai, Hunter B B. Fraser posted to evolution gene method selection variation by dpollard on 2006-07-13 19:10:38 as along with 4 people and 1 group bnchakraborty djkt BioNica friendpine EisenLab
	Genetic variation in human gene expression. [My Copy] Mamm Genome (12 June 2006) by Emmanouil T. Dermitzakis, Barbara E. Stranger posted to expression gene review variation by dpollard on 2006-06-16 21:00:17 as along with 4 people and 2 groups psique cmm noano djkt EisenLab FAB-lab
	Genomic inferences of the cis-regulatory nucleotide polymorphisms underlying gene expression differences between Drosophila melanogaster mating races. [My Copy] Molecular biology and evolution, Vol. 23, No. 8. (5 August 2006), pp. 1585-1591. by Naoki Osada, Michael H. Kohn, Chung-I I. Wu posted to drosophila evolution expression polymorphism promoter speciation variation by dpollard on 2006-06-09 22:43:58 as along with 5 people and 1 group daveGerrard emilyhare adepace natstreet emptyhb EisenLab
	Gene Regulation Divergence is a Major Contributor to the Evolution of Dobzhansky-Muller Incompatibilities between Species of Drosophila. [My Copy] Mol Biol Evol (6 June 2006) by Wilfried Haerty, Rama S S. Singh posted to drosophila expression speciation variation by dpollard on 2006-06-09 22:28:09 as along with 2 people and 1 group RMGraze ranb EisenLab
	Estimating the genome-wide rate of adaptive protein evolution in Drosophila. [My Copy] Genetics (2 April 2006) by John J J. Welch posted to adaptive drosophila evolution gene variation by dpollard on 2006-04-07 18:58:03 as along with 3 people and 1 group druvus indigoviolet jri EisenLab
	Strong region-specific heterogeneity in base composition evolution on the Drosophila X chromosome. [My Copy] Genetics (17 March 2006) by Wen-Ya Y. Ko, Shengfu Piao, Hiroshi Akashi posted to base composition drosophila evolution gene nonstationary rate reconstruction tree variation by dpollard on 2006-03-31 23:50:30 as along with 1 group EisenLab
	Origins of extrinsic variability in eukaryotic gene expression [My Copy] Nature (21 December 2005) by Dmitri Volfson, Jennifer Marciniak, William J. Blake, Natalie Ostroff, Lev S. Tsimring, Jeff Hasty posted to expression extrinsic gene noise variation yeast by dpollard on 2006-03-21 19:48:58 as along with 6 people and 1 group guhjy bayesian balabu timflutre margaritis cjeans EisenLab
	Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes. [My Copy] Gene, Vol. 366, No. 2. (1 February 2006), pp. 343-351. by C. R. Landry, J. Oh, D. L. Hartl, D. Cavalieri posted to gene genetic multi-copy non-essential placticity transcription variation yeast by dpollard on 2006-03-21 19:21:02 as along with 4 people and 1 group jbsaltz caseybrown aubinhon klo EisenLab
	PLoS Computational Biology: Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp [My Copy] posted to adaptive evolution gene rate variation by dpollard on 2006-03-17 20:59:12 as along with 1 group EisenLab

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drosophila	119
eisen_journal_club	115
round_robin	94
evolution	71
method	56
cis_regulatory_elements	51
gene	45
prediction	43
expression	40
binding_site	32
transcription	27
alignment	25
yeast	25
review	24
development	22
variation	22
in_depth_suggestion	20
transcription_factor	19
motif	18
phylogeny	18
selection	18
expression_pattern	17
turnover	17
binding	16
genome_architecture	16
polymorphism	16
regulatory_evolution	16
rockman_journal_club	16
adaptive	15
conserved	15
dan_presented	15
network	15
qtl	15
rate	15
gene_expression	14
human	14
modeling	14
devin_presented	13
genome_size	13
noncoding	13
c_elegans	12
colin_presented	12
grammar	12
indels	12
pattern	12
population_genetics	12
chip_chip	11
in_depth	11
promoter	11
rnai	11
embryonic_patterning	10
regulatory_sequence_evolution	10
rich_presented	10
allele-specific	9
association_mapping	9
eqtl	9
expression_divergence	9
insect	9
model	9
ab_initio	8
alignment_accuracy	8
angela_presented	8
duplication	8
mammal	8
regulatory_sequence	8
small_rnas	8
stuart_presented	8
venky_presented	8
adaptation	7
chromatin	7
constraint	7
lab_library	7
matt_presented	7
protein	7
pwm	7
regulation	7
speciation	7
annotation	6
array	6
clustering	6
comparative	6
conservation	6
crm	6
embryo	6
emily_presented	6
epistasis	6
expression_polymorphism	6
regulatory_polymorphism	6
brain	5
enhancer	5
evo_devo	5
insulators	5
motif_detection	5
mutation	5
nucleosome	5
population_structure	5
recombination	5
reconstruction	5
regulatory_network	5
seminal_paper	5
structure	5
system	5
transposable_elements	5
vertebrate	5
bacteria	4
brant_presented	4
chromatin_modification	4
discovery	4
dynamics	4
environment	4
gene_family	4
genome_wide	4
indel	4
insects	4
lenny_presented	4
nervous	4
neuro	4
snps	4
te	4
worms	4
accuracy	3
affinity	3
argonaute	3
cis_vs_trans	3
coactivator	3
comparative_genomics	3
correlation	3
dominance	3
effect_size	3
enhanceosome	3
experimental_evolution	3
fitness	3
genome	3
genome_sequence	3
genomic	3
intergenic	3
mapping	3
mechanism	3
microrna	3
morphological_evolution	3
mouse	3
multiple_alignment	3
nematode	3
neutral	3
noncoding_dna	3
spacing	3
stew_presented	3
test_for_selection	3
tree	3
whole_genome	3
3utr	2
adaptive_evolution	2
association	2
binding_site_alignment	2
bootstrap	2
cis	2
coexpression	2
color_variation	2
complex_trait	2
composition	2
concatonation	2
convergent	2
corepression	2
database	2
divergence_estimation	2
gene_prediction	2
gene_tree	2
germline	2
gradient	2
histone	2
hitchhiking	2
hox	2
hybrid	2
hypersensitive	2
in-depth	2
inversion	2
kenetics	2
length	2
lineage_specific	2
linkage	2
loss	2
meiosis	2
modularity	2
noncoding_rna	2
noncoding_transcription	2
non-essential	2
parameter_estimation	2
pigmentation	2
placticity	2
positive_selection	2
protein_function_evolution	2
proteomics	2
pseudogene	2
purifying	2
repression	2
rna	2
sechellia	2
sequence_specificity	2
specific	2
translation_rate	2
vertibrates	2
website	2
454	1
acid	1
advanced_intercross	1
affy_array	1
americana	1
amino	1
amino_acid	1
anterior_posterior	1
antisense	1
antiviral	1
ap_x_dv	1
assembly	1
background_selection	1
base	1
bee	1
biochemical	1
biophysical_model	1
body	1
bristle	1
browser	1
cgh	1
chimp	1
chimpanzee	1
chip_seq	1
cis_reg_polymorphism	1
cnv	1
co_dominance	1
codon_usage	1
coevolution	1
cofactor	1
cognative_evolution	1
computational	1
concordance	1
cutoff	1
danr_presented	1
data	1
degredation	1
demography	1
detection	1
diffusion	1
disease	1
dnasei	1
dn_ds_ratio	1
domain	1
domains	1
domestication	1
dosage_compensation	1
encode	1
energy_landscape	1
eukaryote	1
even-skipped	1
experimental	1
experssion_pattern	1
extension	1
extrinsic	1
false_positive	1
fish	1
formation	1
fst	1
ftz	1
gc_content	1
genealogy	1
gene_by_environment_interaction	1
gene-expression	1
gene_function_evolution	1
genetic	1
genetic_interactions	1
genetic_screen	1
gene_vs_species_tree	1
genome_structure	1
germ	1
gwas	1
haplotype_inference	1
heart	1
helical_phasing	1
heterogeneity	1
heterotachy	1
horizontal_transfer	1
illumina_beads	1
imprinting	1
inbred_lines	1
in_situ	1
integration	1
interval_mapping	1
intron	1
intron_evolution	1
in_vitro	1
in_vivo	1
karyotype	1
lethality	1
life	1
lineage	1
low_frequency	1
markov	1
massively_parallel_signature_sequencing	1
maternal	1
matrix	1
metazoan	1
micro_array	1
morphology	1
multi-copy	1
multiple_testing	1
mutational_load	1
natural_selection	1
natural_variation	1
neo-y	1
neural	1
next_gen_sequencing	1
noise	1
non-neutral	1
nonstationary	1
not_recommended	1
odorant	1
paleoecology	1
parallel_evolution	1
paralog	1
paralog_divergence	1
phenotype	1
phenotypic_effect	1
physical	1
pirna	1
plan	1
plants	1
post_transcriptional_modification	1
properties	1
protein_dna_interaction	1
qst	1
range	1
rapid	1
regular_expressions	1
response	1
rna_structure	1
rnp	1
rules	1
scaling	1
segmentation	1
semi_dominance	1
sequence_properties	1
sequencing_error	1
sequencing_technology	1
sex	1
short	1
similarity	1
simulation	1
slightly_deleterious_mutations	1
snp	1
solexa	1
sorting	1
specialization	1
sperm	1
splicing	1
steric_repression	1
strains	1
structural_variation	1
substitution_rate_variation	1
symbiont	1
synteny	1
targets	1
theory	1
threshold	1
timing	1
tissue_specific	1
tissue-specific	1
trait_covariance	1
trait_decomposition	1
tree_topology	1
tribolium	1
virilis	1
weak	1
x_inactivation	1
x_vs_autosomes	1
zygotic	1

dpollard's variation [22 articles] Export

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