Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison Export

@article{citeulike:4464021, abstract = {Summary:We present a tool called Rahnuma for prediction and analysis of metabolic pathways and comparison of metabolic networks. Rahnuma represents metabolic networks as hypergraphs and computes all possible pathways between two or more metabolites. It provides an intuitive way to answer biological ques- tions focusing on differences between organisms or the evolution of different species by allowing pathway-based metabolic network comparisons at an organism as well as at a phylogenetic level. Availability: Rahnuma is available online at http://portal.stats.ox.ac.uk:8080/rahnuma/. Contact: gail.preston@plants.ox.ac.uk Supplementary information: Supplementary data are available at the Bioinformatics online. 10.1093/bioinformatics/btp269}, author = {Mithani, Aziz and Preston, Gail M. and Hein, Jotun}, citeulike-article-id = {4464021}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp269}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/14/1831}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19398450}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19398450}, day = {15}, doi = {10.1093/bioinformatics/btp269}, journal = {Bioinformatics}, keywords = {pathways}, month = {July}, number = {14}, pages = {1831--1832}, posted-at = {2009-07-24 15:41:17}, priority = {2}, title = {Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison}, url = {http://dx.doi.org/10.1093/bioinformatics/btp269}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:4464021 L3 - citeulike-article-id:4464021 N2 - Summary:We present a tool called Rahnuma for prediction and analysis of metabolic pathways and comparison of metabolic networks. Rahnuma represents metabolic networks as hypergraphs and computes all possible pathways between two or more metabolites. It provides an intuitive way to answer biological ques- tions focusing on differences between organisms or the evolution of different species by allowing pathway-based metabolic network comparisons at an organism as well as at a phylogenetic level. Availability: Rahnuma is available online at http://portal.stats.ox.ac.uk:8080/rahnuma/. Contact: gail.preston@plants.ox.ac.uk Supplementary information: Supplementary data are available at the Bioinformatics online. 10.1093/bioinformatics/btp269 IS - 14 JF - Bioinformatics EP - 1832 TI - Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison VL - 25 SP - 1831 KW - pathways AU - Mithani, Aziz AU - Preston, Gail AU - Hein, Jotun PY - 2009/07/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp269 ER -