dquest's motifsampling [38 articles] Export

Recent papers added to dquest's library classified by the tag motifsampling. You can also see everyone's motifsampling.

	Predicting functionality of protein-DNA interactions by integrating diverse evidence [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i137-144. by Duygu Ucar, Andreas Beyer, Srinivasan Parthasarathy, Christopher T. Workman posted to motifpaper motifsampling by dquest on 2009-07-09 19:29:04 as along with 3 people ashishanand TRHvidsten scjparker
	DISCOVER: a feature-based discriminative method for motif search in complex genomes [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i321-329. by Wenjie Fu, Pradipta Ray, Eric P. Xing posted to motifpaper motifsampling by dquest on 2009-07-09 19:23:09 as along with 6 people and 1 group bsamal guhjy Stew idonaldson thegoose maximilianh Bioinformatics - CRUK
	CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing. [My Copy] PLoS computational biology, Vol. 4, No. 6. (6 June 2008), e1000090. by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P. Xing posted to motifpaper motifsampling by dquest on 2009-07-09 19:21:05 as along with 7 people and 1 group emptyhb madreach xili03 djkt cisevol Stew Ema cis-regulatory-evolution
	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted to benchmark motifpaper motifsampling by dquest on 2009-06-26 16:08:38 as along with 9 people and 3 groups bsamal Stew marti Lombardo_7 megraw operon nuin AlexBateman scjparker EisenLab Bioinformatics - CRUK Journal picks
	Discovering Sequence Motifs with Arbitrary Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (9 May 2008), e1000071. by Martin C. Frith, Neil F. W. Saunders, Bostjan Kobe, Timothy L. Bailey posted to motifpaper motifsampling by dquest on 2008-05-14 19:38:39 as along with 10 people thegoose foxpowa wowalz madreach gjuggler Stew cabbagesofdoom neils Ema Evangelia
	ELPH Manual from the Center for Bioinformatics and Computational Biology [My Copy] (2000) posted to motifpaper motifsampling by dquest on 2008-05-09 20:42:44 as
	Discovering transcriptional modules from motif, chip-chip and microarray data. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2005), pp. 483-494. by T. De Bie, P. Monsieurs, K. Engelen, B. De Moor, N. Cristianini, K. Marchal posted to motifpaper motifsampling by dquest on 2008-05-07 23:04:45 as
	Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom posted to motifpaper motifsampling by dquest on 2008-04-23 15:14:39 as along with 7 people natstreet druvus heliopais kengg bootsy bertelsen guhjy
	Ab Initio Prediction of Transcription Factor Targets Using Structural Knowledge [My Copy] PLoS Comput Biol, Vol. 1, No. 1. (24 June 2005), e1. by Tommy Kaplan, Nir Friedman, Hanah Margalit posted to motifpaper motifsampling by dquest on 2008-04-17 16:48:46 as along with 3 people roys druvus bpb
	Evolutionary approaches for the reverse-engineering of gene regulatory networks: a study on a biologically realistic dataset [My Copy] BMC Bioinformatics, Vol. 9 (08 February 2008), 91. by Cedric Auliac, Vincent Frouin, Xavier Gidrol, Florence D'alche-Buc posted to baysian motifpaper motifsampling regulatorynetworks by dquest on 2008-02-11 18:38:01 as along with 1 person thomaskelder
	SIGffRid: a tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics [My Copy] BMC Bioinformatics, Vol. 9 (31 January 2008), 73. by Fabrice Touzain, Sophie Schbath, Isabelle Debled-Rennesson, Bertrand Aigle, Gregory Kucherov, Pierre Leblond posted to motifpaper motifsampling by dquest on 2008-02-01 15:23:42 as along with 1 person xili03
	Identification of DNA-binding proteins using support vector machines and evolutionary profiles [My Copy] BMC Bioinformatics, Vol. 8 (27 November 2007), 463. by Manish Kumar, Michael M. Gromiha, Gajendra P. S. Raghava posted to motifpaper motifsampling proteinmotiffinding by dquest on 2007-11-28 17:59:06 as
	Improved benchmarks for computational motif discovery. [My Copy] BMC bioinformatics, Vol. 8 (08 June 2007), 193. by G. K. Sandve, O. Abul, V. Walseng, F. Drabløs posted to motifpaper motifsampling by dquest on 2007-11-23 15:52:44 as along with 2 people wowalz zdai
	REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3487-3490. by C. Roven, H. J. Bussemaker posted to motifpaper motifsampling by dquest on 2007-11-23 14:25:46 as along with 4 people and 1 group askrajiv nickluscombe heliopais mariakmejia EBI-regulation
	Discovering Motifs in Ranked Lists of DNA Sequences [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39. by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini posted to motifpaper motifsampling by dquest on 2007-11-23 13:58:08 as along with 3 people and 1 group heliopais dpollard yevishere EisenLab
	Approaches to the automatic discovery of patterns in biosequences. [My Copy] J Comput Biol, Vol. 5, No. 2. (1998), pp. 279-305. by A. Brazma, I. Jonassen, I. Eidhammer, D. Gilbert posted to motifpaper motifsampling by dquest on 2007-11-23 13:48:37 as along with 2 people wowalz treangen
	Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data [My Copy] BMC Bioinformatics, Vol. 8 (03 August 2007), 283. by Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic posted to motifpaper motifsampling by dquest on 2007-11-22 13:59:46 as along with 3 people and 1 group bais nklee naegele ic4
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to motifpaper motifsampling by dquest on 2007-11-22 13:55:32 as along with 18 people and 2 groups bsamal Dulce lusk wowalz svenrahmann isimpson daveGerrard coldmeadow druvus Stew emptyhb nklee maximilianh yevishere csdhwang brant xili03 pradiptaray BergmanLab Bioinformatics - CRUK
	MotifViz: an analysis and visualization tool for motif discovery [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W420-423. by Yutao Fu, Martin C. Frith, Peter M. Haverty, Zhiping Weng posted to motifpaper motifsampling visualization by dquest on 2007-11-11 20:34:10 as along with 2 people stharward farhat
	CoMoDis: composite motif discovery in mammalian genomes [My Copy] Nucleic Acids Research In Nucl. Acids Res., Vol. 35, No. 1. (12 January 2007), pp. e1-e1. by Ian J. Donaldson, Berthold Gottgens posted to motifpaper motifsampling by dquest on 2007-11-11 20:32:00 as along with 3 people bsamal maximilianh wowalz
	Identification of the binding sites of regulatory proteins in bacterial genomes. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 18. (3 September 2002), pp. 11772-11777. by H. Li, V. Rhodius, C. Gross, E. D. Siggia posted to motifsampling motifpaper by dquest on 2007-01-24 06:45:17 as along with 2 people wowalz kaarsinogen
	Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster [My Copy] PLoS Comput Biol, Vol. 3, No. 1. (19 January 2007), e7. by Thomas A. Down, Casey M. Bergman, Jing Su, Tim J. P. Hubbard posted to motifsampling motifpaper by dquest on 2007-01-23 14:08:16 as along with 12 people and 1 group bsamal daveGerrard ychromosome timhubbard lusk wowalz indigoviolet dpollard SeungjoonOh nklee emptyhb isimpson EisenLab
	Statistical significance of cis-regulatory modules [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Dustin Schones, Andrew Smith, Michael Zhang posted to motifsampling motifpaper by dquest on 2007-01-23 14:02:15 as along with 10 people and 1 group druvus indigoviolet dpollard sebastien_vigneau shigepong SeungjoonOh GustavoLacerda nklee xili03 sconlan EisenLab
	Visual setup of logical models of signaling and regulatory networks with ProMoT [My Copy] BMC Bioinformatics, Vol. 7 (17 November 2006), 506. by Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst D. Gilles, Martin Ginkel posted to motifpaper motifsampling proteinnetworks regulatorynetworks by dquest on 2006-11-22 01:43:12 as along with 1 person wnpx
	Using local gene expression similarities to discover regulatory binding site modules [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (17 November 2006), 505. by Bartek Wilczynski, Torgeir Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, Krzysztof Fidelis posted to motifpaper motifsampling by dquest on 2006-11-22 01:40:42 as along with 4 people TRHvidsten wowalz jfr smiddha
	CoXpress: differential co-expression in gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (20 November 2006), 509. by Michael Watson posted to motifpaper motifsampling by dquest on 2006-11-22 01:38:02 as along with 5 people ptrobajo jfr shigepong waszak dps
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to motifsampling by dquest on 2006-10-16 23:23:07 as along with 39 people and 6 groups frohike mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Limitations and potentials of current motif discovery algorithms [My Copy] Nucl. Acids Res., Vol. 33, No. 15. (2 September 2005), pp. 4899-4913. by Jianjun Hu, Bin Li, Daisuke Kihara posted to motifsampling by dquest on 2006-10-16 23:21:05 as along with 6 people and 1 group Dulce farhat wowalz Stew bryankr gpalidwor Bioinformatics - CRUK
	TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3164-3165. by D. Benjamin Gordon, Lena Nekludova, Scott Mccallum, Ernest Fraenkel posted to motifsampling by dquest on 2006-10-16 22:53:11 as along with 1 person wowalz
	Modeling within-motif dependence for transcription factor binding site predictions. [My Copy] Bioinformatics, Vol. 20, No. 6. (12 April 2004), pp. 909-916. by Q. Zhou, J. S. Liu posted to motifsampling by dquest on 2006-09-29 23:02:10 as along with 1 person xili03
	Analysis of computational approaches for motif discovery [My Copy] Algorithms for Molecular Biology (19 May 2006), pp. 1-8. by Nan posted to motifsampling by dquest on 2006-08-29 21:48:22 as
	EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences [My Copy] BMC Bioinformatics, Vol. 7 (13 July 2006), 342. by Jianjun Hu, Yifeng D. Yang, Daisuke Kihara posted to motifsampling by dquest on 2006-07-17 14:01:56 as
	BLISS: biding site level identification of shared signal-modules in DNA regulatory sequences [My Copy] BMC Bioinformatics, Vol. 7 (07 June 2006), 287. by Hailong Meng, Arunava Banerjee, Lei Zhou posted to motifsampling by dquest on 2006-06-12 16:41:13 as along with 2 people and 1 group dpollard uz_labu_laimi EisenLab
	BEST: Binding-site Estimation Suite of Tools [My Copy] Bioinformatics In Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2909-2911. by Dongsheng Che, Shane Jensen, Liming Cai, Jun S. Liu posted to motifpaper motifsampling by dquest on 2006-06-07 20:04:09 as along with 2 people bsamal nklee
	Bounded search for de novo identification of degenerate cis-regulatory elements [My Copy] by Jonathan posted to motifsampling by dquest on 2006-06-07 20:00:39 as
	BioMed Central \| Abstract \| 1471-2105-7-279 \| Optimized mixed Markov models for motif identification [My Copy] posted to motifsampling by dquest on 2006-06-05 17:43:01 as
	Analysis of computational approaches for motif discovery [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8. by Nan Li, Martin Tompa posted to motifsampling by dquest on 2006-05-22 14:36:03 as along with 12 people and 2 groups bsamal wowalz yevishere ana barry tuck chad_davis lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
	BioMed Central \| Abstract \| 1471-2105-7-262 \| Predicting DNA-binding sites of proteins from amino acid sequence [My Copy] posted to motifsampling by dquest on 2006-05-22 14:35:05 as

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motifpaper	168
grammarpaper	63
motifsampling	38
regulatorynetworks	31
bioregulationoverview	27
microarrayanalysis	15
rnai	10
basedonbaldietal	9
proteinnetworks	7
rnastructure	6
algorithms	5
orthalog	5
chipseq	5
databases	5
rnafolding	4
sirna	4
chipchip	4
histones	4
microarray	3
transcriptregulation	3
phylogenetics	3
visualization	3
baysian	3
transcriptionbasics	3
staph	2
statistics	2
ontology	2
multiplesequencealignment	2
timecoursemicroarray	2
analysis	2
networkmotifs	2
mirna	2
benchmark	2
bacteriainfoandalgs	1
questpapers	1
descriptionlogics	1
human	1
microrna	1
centraldogmarevisited	1
thesis	1
proteindocking	1
file-import-09-07-06	1
ecoli	1
repeats	1
prediction	1
bioinformaticscoursematerial_sequences	1
repeatmasking	1
prokaryotes	1
geneprediction	1
general	1
imunology	1
transcriptfeedbackloops	1
owl	1
enzymes	1
3d	1
methalation	1
promoter	1
software	1
bsub	1
knowledgebase	1
proteinmotiffinding	1
proteinstructure	1
softwareengineering	1
biosites	1
phylogeneticprofiling	1
libraries	1
rna	1
organals	1
lcmsms	1
machinelearning	1
ribozymes	1
pathways	1
parallel	1
matt	1
alignment	1
geneduplicationandloss	1

dquest's motifsampling [38 articles] Export

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