dragonrez's library 340 articles Export

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	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to pathway_expansion pathway_perturbation by dragonrez on 2007-12-10 23:26:41 as along with 22 people and 2 groups zufar bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to no-tag by dragonrez on 2007-01-30 22:51:41 as along with 21 people and 4 groups daforerog shikin jimineep ggallone brian tmmurali okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ
	Conserved patterns of protein interaction in multiple species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979. by R. Sharan, S. Suthram, R. M. Kelley, et al.T. Kuhn, S. Mccuine, P. Uetz, T. Sittler, R. M. Karp, T. Ideker posted to no-tag by dragonrez on 2005-06-13 00:13:34 as along with 18 people and 2 groups chica kiekyon thegoose2 robfsouza carlk tharris jiny sza okarsligil balajis nuke2005 maryee gurkanbebek koller cjeans iris_2001 maralena mdstobbe C. elegans / WormBase Bioinformatics
	The maximum edge biclique problem is NP-complete [My Copy] Discrete Applied Mathematics, Vol. 131, No. 3. (28 September 2003), pp. 651-654. by Ren&\#233; Peeters posted to no-tag by dragonrez on 2005-06-12 20:25:30 as along with 1 person renatocarmo
	Introduction to Algorithms, Second Edition [My Copy] (01 September 2001) by Thomas H. Cormen, Charles E. Leiserson, Ronald L. Rivest, Clifford Stein posted to no-tag by dragonrez on 2005-06-12 18:45:08 as along with 21 people newdawn seb1 n00c ekatsyrk jmmcg Gorzomagnificent Fantozzi seninp dagmar citeUlike123 jcheng marciolima gurkanbebek tmarscha dodger042 napvasconcelos chandlerc csacca pawelt eporreca sven_luzar
	Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis [My Copy] Bioinformatics, Vol. 23, No. 12. (15 June 2007), pp. 1495-1502. by Hyunsoo Kim, Haesun Park posted to cancer nmf by dragonrez on 2007-10-17 04:05:18 as along with 7 people vingron nliu82 engelhardt svozil tmmurali aviad_work shigepong
	Learning the parts of objects by non-negative matrix factorization. [My Copy] Nature, Vol. 401, No. 6755. (21 October 1999), pp. 788-791. by D. D. Lee, H. S. Seung posted to nmf nonnegative_matrix_factorization by dragonrez on 2007-10-17 04:13:23 as along with 17 people and 4 groups bertelsen kohei-h ppeeling JacquesC davidr anar jfr yas yama_tah pliz scis0000001 oannes cerkut atbrew zeppe kintoki cager NU-PRL T_lab Regulomics_UCHSC contact-id
	Identification of biomarkers for tumor endothelial cell proliferation through gene expression profiling. [My Copy] Molecular cancer therapeutics, Vol. 4, No. 3. (March 2005), pp. 413-425. by James S. Hardwick, Yi Yang, Chunsheng Zhang, et al.Bin Shi, Rosemary McFall, Elizabeth J. Koury, Susan L. Hill, Hongyue Dai, Robert Wasserman, Robert L. Phillips, Edward J. Weinstein, Nancy E. Kohl, Michael E. Severino, John R. Lamb, Laura Sepp-Lorenzino posted to angiogenesis by dragonrez on 2009-09-02 21:26:00 as
	CORUM: the comprehensive resource of mammalian protein complexes. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D646-650. by Andreas Ruepp, Barbara Brauner, Irmtraud Dunger-Kaltenbach, et al.Goar Frishman, Corinna Montrone, Michael Stransky, Brigitte Waegele, Thorsten Schmidt, Octave Noubibou N. Doudieu, Volker Stümpflen, H. Werner Mewes posted to human_complexes by dragonrez on 2009-08-18 21:06:12 as along with 6 people poirel carlk tmmurali chad_davis guhjy shung
	Mortality over a period of 10 years in patients with peripheral arterial disease [My Copy] N Engl J Med, Vol. 326, No. 6. (6 February 1992), pp. 381-386. by M. H. Criqui, R. D. Langer, A. Fronek, et al.H. S. Feigelson, M. R. Klauber, T. J. Mccann, D. Browner posted to pad by dragonrez on 2009-07-13 17:38:31 as
	PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results [My Copy] Journal of Computer-Aided Molecular Design, Vol. 20, No. 10. (1 October 2006), pp. 647-671. by Steven Dixon, Alexander Smondyrev, Eric Knoll, Shashidhar Rao, David Shaw, Richard Friesner posted to docking by dragonrez on 2009-07-02 17:06:33 as along with 1 person daevans
	VEGF receptor signaling in tumor angiogenesis. [My Copy] The oncologist, Vol. 5 Suppl 1 (2000), pp. 3-10. by G. McMahon posted to vegf by dragonrez on 2009-07-01 21:21:32 as
	VEGF receptor signalling - in control of vascular function. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 5. (May 2006), pp. 359-371. by A. K. Olsson, A. Dimberg, J. Kreuger, L. Claesson-Welsh posted to vegf by dragonrez on 2009-07-01 19:01:49 as along with 3 people and 2 groups ajaymalik dchughes major724 G4ID Genetics-of-Gambling
	A global analysis of cross-talk in a mammalian cellular signalling network [My Copy] Nat Cell Biol, Vol. 8, No. 6. (14 May 2006), pp. 571-580. by Madhusudan Natarajan, Keng-Mean Lin, Robert C. Hsueh, Paul C. Sternweis, Rama Ranganathan posted to cross_talk by dragonrez on 2009-05-11 19:49:45 as along with 1 person roys
	Integrin–collagen binding [My Copy] Seminars in Cell & Developmental Biology, Vol. 7, No. 5. (October 1996), pp. 649-657. by D. Tuckwell, M. Humphries posted to angiogenesis_inhibitor by dragonrez on 2009-05-11 04:03:20 as
	Regression shrinkage and selection via the lasso [My Copy] J. Roy. Statist. Soc. Ser. B, Vol. 58, No. 1. (1996), pp. 267-288. by Robert Tibshirani posted to convex by dragonrez on 2009-03-26 00:30:26 as along with 3 people sona mukundn sbarthelme
	A global pathway crosstalk network. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 12. (15 June 2008), pp. 1442-1447. by Y. Li, P. Agarwal, D. Rajagopalan posted to no-tag by dragonrez on 2009-03-16 23:19:19 as along with 8 people daforerog thomaskelder maralena bootsy renatomilani AlexanderPico guhjy balicea
	Kernel-based data fusion and its application to protein function prediction in yeast. [My Copy] Pac Symp Biocomput (2004), pp. 300-311. by G. R. Lanckriet, M. Deng, N. Cristianini, M. I. Jordan, W. S. Noble posted to function_prediction kernel by dragonrez on 2009-03-11 17:31:13 as along with 3 people fabgoos carlk jccaicedo
	STRING 7--recent developments in the integration and prediction of protein interactions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by C. von Mering, L. J. Jensen, M. Kuhn, et al.S. Chaffron, T. Doerks, B. Krüger, B. Snel, P. Bork posted to ppi_network by dragonrez on 2009-03-11 15:22:16 as along with 16 people anf druvus Cortel wenhui chad_davis guhjy kuhn balajis fisherp raiyar massivemayhem larsjuhljensen higueruelo renatomilani carlk bicko
	Discovery of biological networks from diverse functional genomic data. [My Copy] Genome Biol, Vol. 6, No. 13. (2005) by C. L. Myers, D. Robson, A. Wible, et al.M. A. Hibbs, C. Chiriac, C. L. Theesfeld, K. Dolinski, O. G. Troyanskaya posted to function_prediction by dragonrez on 2009-03-11 15:20:46 as along with 5 people roys cswinburne grahamc carlk AbnerCYH
	A combined algorithm for genome-wide prediction of protein function. [My Copy] Nature, Vol. 402, No. 6757. (4 November 1999), pp. 83-86. by E. M. Marcotte, M. Pellegrini, M. J. Thompson, T. O. Yeates, D. Eisenberg posted to function_prediction by dragonrez on 2009-03-11 15:18:43 as along with 7 people and 1 group jperkins Robinder shivaram lfriedl ruvido cjeans carlk kdl
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to function_prediction kernel by dragonrez on 2009-03-11 15:17:02 as along with 24 people and 1 group cerca ptrobajo kiekyon AbnerCYH roys jwhitney Sonix mtaschuk babakap phoenixzxl druvus pengchy jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi ellakat carlk SysbioMPI-TCells
	GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. [My Copy] Genome biology, Vol. 9 Suppl 1 (2008) by S. Mostafavi, D. Ray, D. Warde-Farley, C. Grouios, Q. Morris posted to function_prediction kernel by dragonrez on 2009-03-11 03:00:41 as along with 2 people udivi guhjy
	Graph-driven features extraction from microarray data [My Copy] (17 Jun 2002) by Jean-Philippe Vert, Minoru Kanehisa posted to kernel by dragonrez on 2009-02-02 21:52:38 as along with 1 person rpadams
	Extracting active pathways from gene expression data. [My Copy] Bioinformatics, Vol. 19 Suppl 2 (October 2003) by J. P. Vert, M. Kanehisa posted to kernel by dragonrez on 2009-02-02 21:29:18 as along with 4 people ajbattle yaredo alexg klo
	A statistical framework for genomic data fusion. [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635. by G. R. Lanckriet, T. De Bie, N. Cristianini, M. I. Jordan, W. S. Noble posted to kernel by dragonrez on 2009-01-30 16:42:55 as along with 8 people isimpson tmmurali jfr mbeautru nedwards carlk ptrobajo mdstobbe
	Disruption of IRS-2 causes type 2 diabetes in mice [My Copy] Nature, Vol. 391, No. 6670. (26 February 1998), pp. 900-904. by Dominic J. Withers, Julio S. Gutierrez, Heather Towery, et al.Deborah J. Burks, Jian-Ming Ren, Stephen Previs, Yitao Zhang, Dolores Bernal, Sebastian Pons, Gerald I. Shulman, Susan Bonner-Weir, Morris F. White posted to pancreatic by dragonrez on 2009-01-12 19:27:13 as
	The relationship between diabetes and pancreatic cancer. [My Copy] Molecular cancer, Vol. 2 (6 January 2003) by F. Wang, M. Herrington, J. Larsson, J. Permert posted to pancreatic by dragonrez on 2009-01-12 19:21:18 as
	Irs-2 coordinates Igf-1 receptor-mediated [beta]-cell development and peripheral insulin signalling [My Copy] Nat Genet, Vol. 23, No. 1. (1999), pp. 32-40. by Dominic J. Withers, Deborah J. Burks, Heather H. Towery, Shari L. Altamuro, Carrie L. Flint, Morris F. White posted to pancreatic by dragonrez on 2009-01-12 19:12:10 as
	On kernel-target alignment [My Copy] In Advances in Neural Information Processing Systems 14, Vol. 14 (2002), pp. 367-373. by Nello Cristianini, Jaz Kandola, Andre Elisseeff, John Shawe-Taylor posted to no-tag by dragonrez on 2009-01-12 00:20:49 as
	Learning the Kernel Matrix with Semidefinite Programming [My Copy] J. Mach. Learn. Res., Vol. 5 (2004), pp. 27-72. by Gert R. G. Lanckriet, Nello Cristianini, Peter Bartlett, Laurent E. Ghaoui, Michael I. Jordan posted to no-tag by dragonrez on 2009-01-11 22:41:16 as
	Adaptive diffusion kernel learning from biological networks for protein function prediction [My Copy] BMC Bioinformatics, Vol. 9 (25 March 2008), 162. by Liang Sun, Shuiwang Ji, Jieping Ye posted to no-tag by dragonrez on 2008-12-16 00:44:40 as along with 5 people aheilbut ajbattle bootsy barriot ptrobajo
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted to pathway by dragonrez on 2008-12-03 20:26:30 as along with 13 people rschulz isimpson yaredo frohike ipark-kaist jfr aviad_work ajbattle zufar carlk renatomilani tmmurali ptrobajo
	The spectrum kernel: a string kernel for SVM protein classification. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2002), pp. 564-575. by C. Leslie, E. Eskin, W. S. Noble posted to no-tag by dragonrez on 2008-12-02 02:41:32 as along with 1 person stharward
	Protein ranking by semi-supervised network propagation. [My Copy] BMC Bioinformatics, Vol. 7 Suppl 1 (2006) by J. Weston, R. Kuang, C. Leslie, W. S. Noble posted to diffusion_kernel by dragonrez on 2008-11-16 23:08:57 as along with 1 person kallberg
	Gene expression profiling in an in vitro model of angiogenesis. [My Copy] The American journal of pathology, Vol. 156, No. 6. (June 2000), pp. 1887-1900. by J. Kahn, F. Mehraban, G. Ingle, et al.X. Xin, J. E. Bryant, G. Vehar, J. Schoenfeld, C. J. Grimaldi, F. Peale, A. Draksharapu, D. A. Lewin, M. E. Gerritsen posted to angiogenesis gene_expression by dragonrez on 2008-11-07 16:06:01 as
	CD40-ligand (CD154) gene therapy for chronic lymphocytic leukemia. [My Copy] Blood, Vol. 96, No. 9. (1 November 2000), pp. 2917-2924. by W. G. Wierda, M. J. Cantwell, S. J. Woods, L. Z. Rassenti, C. E. Prussak, T. J. Kipps posted to cancer leukemia by dragonrez on 2008-10-07 02:17:00 as
	Acquired CD40-ligand deficiency in chronic lymphocytic leukemia [My Copy] Nat Med, Vol. 3, No. 9. (1997), pp. 984-989. by Mark Cantwell, Tinh Hua, Jim Pappas, Thomas J. Kipps posted to cancer leukemia by dragonrez on 2008-10-07 00:16:21 as
	FIP1L1-PDGFRA in chronic eosinophilic leukemia and BCR-ABL1 in chronic myeloid leukemia affect different leukemic cells [My Copy] Leukemia, Vol. aop, No. current. by B. Crescenzi, A. Chase, R. La Starza, et al.D. Beacci, V. Rosti, A. Gallì, G. Specchia, M. F. Martelli, P. Vandenberghe, J. Cools, A. V. Jones, N. C. P. Cross, P. Marynen, C. Mecucci, posted to leukemia by dragonrez on 2008-10-06 22:10:22 as
	E-cadherin expression in melanoma cells restores keratinocyte-mediated growth control and down-regulates expression of invasion-related adhesion receptors. [My Copy] The American journal of pathology, Vol. 156, No. 5. (May 2000), pp. 1515-1525. by M. Y. Hsu, F. E. Meier, M. Nesbit, et al.J. Y. Hsu, P. Van Belle, D. E. Elder, M. Herlyn posted to cancer by dragonrez on 2008-10-06 21:28:28 as
	Inhibiting angiogenesis and tumorigenesis by a synthetic molecule that blocks binding of both VEGF and PDGF to their receptors [My Copy] Oncogene, Vol. aop, No. current. by Jiazhi Sun, De-An Wang, Rishi K. Jain, et al.Adam Carie, Steve Paquette, Eileen Ennis, Michelle A. Blaskovich, Laura Baldini, Domenico Coppola, Andrew D. Hamilton, Saïd M. Sebti, Saïd M. Sebti, Saïd M. Sebti posted to angiogenesis cancer by dragonrez on 2008-10-06 21:06:11 as
	Elevated levels of the angiogenic cytokines basic fibroblast growth factor and vascular endothelial growth factor in sera of cancer patients. [My Copy] British journal of cancer, Vol. 76, No. 2. (1997), pp. 238-243. by L. Y. Dirix, P. B. Vermeulen, A. Pawinski, et al.A. Prové, I. Benoy, C. De Pooter, M. Martin, A. T. Van Oosterom posted to angiogenesis cancer by dragonrez on 2008-10-06 21:02:24 as
	EGFR antagonists in cancer treatment. [My Copy] N Engl J Med, Vol. 358, No. 11. (13 March 2008), pp. 1160-1174. by F. Ciardiello, G. Tortora posted to cancer by dragonrez on 2008-10-06 20:50:21 as along with 3 people jfr guhjy dfp7582
	Cancer: Short-circuit to tumour cell apoptosis [My Copy] Nature Reviews Drug Discovery, Vol. 7, No. 1., pp. 18-19. by Alexandra Flemming posted to apoptosis by dragonrez on 2008-10-06 20:23:14 as
	Network-based analysis of affected biological processes in type 2 diabetes models. [My Copy] PLoS genetics, Vol. 3, No. 6. (1 June 2007), e96. by Manway Liu, Arthur Liberzon, Sek Won W. Kong, et al.Weil R. Lai, Peter J. Park, Isaac S. Kohane, Simon Kasif posted to active_network by dragonrez on 2008-08-28 01:46:44 as along with 4 people yaredo tmmurali jfr ajgentles
	Identifying functional modules in protein-protein interaction networks: an integrated exact approach [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231. by Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller posted to active_network by dragonrez on 2008-08-28 01:41:42 as along with 8 people carlk babakap diamantis jfr guhjy marck renatomilani tmmurali
	Gradient directed regularization for linear regression and classification [My Copy] (2004) by Jerome H. Friedman, Bogdan E. Popescu posted to no-tag by dragonrez on 2008-08-21 01:13:10 as
	Systematic survey reveals general applicability of guilt-by-association within gene coexpression networks. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by C. J. Wolfe, I. S. Kohane, A. J. Butte posted to no-tag by dragonrez on 2008-08-20 21:33:33 as along with 3 people balajis maryee srp33
	BIND: the Biomolecular Interaction Network Database. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 248-250. by Gary D. Bader, Doron Betel, Christopher W. Hogue posted to no-tag by dragonrez on 2008-08-03 23:11:42 as along with 9 people and 2 groups bertelsen web03 viktor21614 okarsligil lfriedl chad_davis dullhunk gurkanbebek bicko kdl Bioinformatics
	Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease [My Copy] Nat Genet, Vol. 29, No. 2. (October 2001), pp. 143-152. by Tobey J. Macdonald, Kevin M. Brown, Bonnie Lafleur, et al.Katia Peterson, Christopher Lawlor, Yidong Chen, Roger J. Packer, Philip Cogen, Dietrich A. Stephan posted to no-tag by dragonrez on 2008-08-02 19:23:03 as

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nmf	27
pathway_perturbation	21
cancer	15
clustering	11
graph_mining	10
bibtex-import	9
active_network	8
function_prediction	8
gene_expression	8
fishers_exact	7
kernel	7
regulation	7
reverse_engineering	7
biclustering	6
angiogenesis	4
coexpression_networks	4
evolution_rate	4
pathway_expansion	4
aml	3
c-kit	3
enrichment_analysis	3
k-means	3
leukemia	3
microarray	3
pancreatic	3
pathway	3
ppi_network	3
database	2
data_integration	2
docking	2
functional_annotation	2
genome	2
human_ppi	2
inhibition	2
integration	2
network_inference	2
nonnegative_matrix_factorization	2
optimization	2
regression	2
relational_graph_mining	2
simulated_annealing	2
spectral	2
vegf	2
activation	1
angiogenesis_inhibitor	1
apoptosis	1
artificial_network	1
bayesian	1
bayesian_network	1
biological_network	1
bregman_distance	1
comparative_analysis	1
compare_response_network	1
complexity	1
convex	1
cross-species	1
cross_talk	1
differential_regulation	1
diffusion_kernel	1
drug_discovery	1
drug_response	1
drug_target	1
em	1
file-import-08-08-04	1
gene_list	1
graph_density	1
graph_partition	1
human_complexes	1
id_pathway	1
integrin	1
interaction_prediction	1
least-squares	1
model_select	1
modules	1
multiple_species	1
networks	1
ovarian_adeno	1
pad	1
partial_correlation	1
phylogeny	1
relationship	1
sequence	1
simulation	1
statistical	1
synthetic_networks	1
systems_biology	1
tgf	1

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