druvus's library 2864 articles Export

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	Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges [My Copy] Nat Rev Genet, Vol. 9, No. 9. (September 2008), pp. 678-688. by Lincoln D. Stein posted to genome by druvus on 2008-08-26 09:23:08 as along with 28 people and 4 groups lmichan artaban421 tomjad n00c PaoloRomano thegoose2 fisherp emayorga nuin rdiaz bmaust guhjy carolh12 ilya alaninmcr srp33 dullhunk tharris stajich mrochman dansullivanblk neils jandot GustavoLacerda jago fgibson thomaskelder sjcockell Mycology Integrative Expertise for Global Health Convention on Knowledge Commons Poverty Alleviation from Access to Knowledge
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to gene_ontology by druvus on 2009-11-04 16:49:01 as along with 36 people and 3 groups dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack 8_01 logics of knowledge FAB-lab
	Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3001-3004. by Feng Tian, Parantu K. Shah, Xiangjun Liu, et al.Nicolas Negre, Jia Chen, Oleksiy Karpenko, Kevin P. White, Robert L. Grossman posted to network genome database by druvus on 2009-11-04 15:30:36 as along with 1 person isimpson
	Microbial forensics: Do Aspergillus fumigatus strains present local or regional differentiation? [My Copy] Forensic Science International: Genetics Supplement Series (01 October 2009) by Ricardo Araujo, António Amorim, Leonor Gusmão posted to microbial_forensics by druvus on 2009-11-04 13:14:39 as
	Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA) [My Copy] FEMS Immunology & Medical Microbiology, Vol. 49, No. 1. (2007), pp. 22-27. by Alex van Belkum posted to mvla bacteria by druvus on 2009-11-04 13:05:32 as
	Toward a System of Microbial Forensics: from Sample Collection to Interpretation of Evidence [My Copy] Appl. Environ. Microbiol., Vol. 71, No. 5. (1 May 2005), pp. 2209-2213. by Bruce Budowle, Steven E. Schutzer, Michael S. Ascher, et al.Ronald M. Atlas, James P. Burans, Ranajit Chakraborty, John J. Dunn, Claire M. Fraser, David R. Franz, Terrance J. Leighton, Stephen A. Morse, Randall S. Murch, Jacques Ravel, Daniel L. Rock, Thomas R. Slezak, Stephan P. Velsko, Anne C. Walsh, Ronald A. Walters posted to microbial_forensics by druvus on 2009-11-04 13:05:03 as
	The genome of the cucumber, Cucumis sativus L. [My Copy] Nature Genetics, Vol. advance online publication (01 November 2009) by Sanwen Huang, Ruiqiang Li, Zhonghua Zhang, et al.Li Li, Xingfang Gu, Wei Fan, William J. Lucas, Xiaowu Wang, Bingyan Xie, Peixiang Ni, Yuanyuan Ren, Hongmei Zhu, Jun Li, Kui Lin, Weiwei Jin, Zhangjun Fei, Guangcun Li, Jack Staub, Andrzej Kilian, Edwin A. G. van der Vossen, Yang Wu, Jie Guo, Jun He, Zhiqi Jia, Yi Ren, Geng Tian, Yao Lu, Jue Ruan, Wubin Qian, Mingwei Wang, Quanfei Huang, Bo Li, Zhaoling Xuan, Jianjun Cao, Asan, Zhigang Wu, Juanbin Zhang, Qingle Cai, Yinqi Bai, Bowen Zhao, Yonghua Han, Ying Li, Xuefeng Li, Shenhao Wang, Qiuxiang Shi, Shiqiang Liu, Won K. Cho, Jae-Yean Kim, Yong Xu, Katarzyna Heller-Uszynska, Han Miao, Zhouchao Cheng, Shengping Zhang, Jian Wu, Yuhong Yang, Houxiang Kang, Man Li, Huiqing Liang, Xiaoli Ren, Zhongbin Shi, Ming Wen, Min Jian, Hailong Yang, Guojie Zhang, Zhentao Yang, Rui Chen, Shifang Liu, Jianwen Li, Lijia Ma, Hui Liu, Yan Zhou, Jing Zhao, Xiaodong Fang, Guoqing Li, Lin Fang, Yingrui Li, Dongyuan Liu, Hongkun Zheng, Yong Zhang, Nan Qin, Zhuo Li, Guohua Yang, Shuang Yang, Lars Bolund, Karsten Kristiansen, Hancheng Zheng, Shaochuan Li, Xiuqing Zhang, Huanming Yang, Jian Wang, Rifei Sun, Baoxi Zhang, Shuzhi Jiang, Jun Wang, Yongchen Du, Songgang Li posted to plant genome by druvus on 2009-11-02 16:38:47 as along with 1 person natstreet
	The day the Internet age began [My Copy] Nature, Vol. 461, No. 7268. (28 October 2009), pp. 1202-1203. by Vinton G. Cerf posted to opinion by druvus on 2009-11-02 09:12:43 as along with 2 people and 1 group AJCann dullhunk eLearning in Leicester
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to snv review next_generation by druvus on 2009-11-02 09:12:24 as along with 9 people and 1 group jasontsai sameersoi heliopais GeeSharpMinor Peiyong n00c gdv desany qayub Journal picks
	Computation for ChIP-seq and RNA-seq studies [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to rna-seq review chip-seq by druvus on 2009-11-02 09:12:06 as along with 7 people inesdesantiago Baschl polivares jwfoley GeeSharpMinor chvlyl heliopais
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to review next_generation assembly alignment by druvus on 2009-11-02 09:11:39 as along with 9 people Thaverkamp jasontsai natstreet seb1 chvlyl GeeSharpMinor n00c venancio desany
	eCAT: Online electronic lab notebook for scientific research [My Copy] Automated Experimentation, Vol. 1, No. 1. (2009), 4. by Nigel Goddard, Rory Macneil, Jonathan Ritchie posted to lab_book by druvus on 2009-11-02 09:06:33 as along with 1 person dullhunk
	Welcome to Automated Experimentation: a new open access journal [My Copy] Automated Experimentation, Vol. 1, No. 1. (2009), 1. by David Robertson, Siu W. Leung, Dietlind Gerloff posted to automation by druvus on 2009-11-02 08:59:52 as along with 2 people dullhunk niallhaslam
	Head in the clouds: Re-imagining the experimental laboratory record for the web-based networked world [My Copy] Automated Experimentation, Vol. 1, No. 1. (2009), 3. by Cameron Neylon posted to lab_book by druvus on 2009-11-02 08:59:05 as along with 8 people and 2 groups kshameer CameronNeylon neils jobadge niallhaslam dullhunk joaocarrico AJCann Science 2.0 / Open Science eLearning in Leicester
	OnEX: Exploring changes in life science ontologies [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 250. by Michael Hartung, Toralf Kirsten, Anika Gross, Erhard Rahm posted to visualisation ontology by druvus on 2009-11-02 08:57:49 as along with 3 people dullhunk guhjy reyez
	BARCRAWL and BARTAB: Software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 October 2009), 362. by Daniel Frank posted to sequencing barcode by druvus on 2009-11-02 08:57:02 as along with 4 people and 1 group natstreet MarkFiers ppgardne heliopais Journal picks
	Translating SQL Applications to the Semantic Web [My Copy] Database and Expert Systems Applications (2008), pp. 450-464. by Syed Tirmizi, Juan Sequeda, Daniel Miranker posted to sql semantic_web by druvus on 2009-11-02 08:54:32 as along with 2 people dullhunk hamidtirmizi
	Cell biology and molecular ecology of <i>Francisella tularensis</i> [My Copy] Cellular Microbiology, Vol. 9999, No. 999A. (2009) by Marina Santic, Souhaila A. Khodor, Yousef A. Kwaik posted to francisella by druvus on 2009-11-02 08:38:56 as
	inGAP: an integrated next-generation genome analysis pipeline [My Copy] Bioinformatics (30 October 2009), btp615. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to snp pipeline next_generation indel by druvus on 2009-11-02 08:12:12 as along with 4 people jasontsai natstreet n00c heliopais
	MicroRazerS: Rapid alignment of small RNA reads [My Copy] Bioinformatics (29 October 2009), btp601. by Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert, Silke R. Sperling posted to rna-seq next_generation alignment by druvus on 2009-11-02 08:11:59 as along with 1 person heliopais
	Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing [My Copy] Brief Bioinform (27 October 2009), bbp046. by David S. Horner, Giulio Pavesi, Tiziana Castrignano, et al.Paolo D. De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole posted to review next_generation by druvus on 2009-10-28 16:55:17 as
	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing. [My Copy] Bioinformatics (Oxford, England) (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to next_generation mapping by druvus on 2009-10-28 16:55:00 as along with 3 people operon heliopais n00c
	The SR protein family [My Copy] Genome Biology, Vol. 10, No. 10. (2009), 242. by Peter Shepard, Klemens Hertel posted to gene family by druvus on 2009-10-28 16:54:47 as
	Stratification of co-evolving genomic groups using ranked phylogenetic profiles [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 355. by Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos Ouzounis posted to phylogeny network co-regulated by druvus on 2009-10-28 16:54:07 as along with 2 people and 1 group CLH_1865 stajich Mycology
	FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix [My Copy] Mol Biol Evol, Vol. 26, No. 7. (1 July 2009), pp. 1641-1650. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted to software evolution alignment by druvus on 2009-10-28 09:51:36 as along with 8 people and 2 groups houniao007 pyilmaz rneches djkt ppgardne jwm skembel nuin iSEEM Journal picks
	phyloXML: XML for evolutionary biology and comparative genomics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 356. by Mira Han, Christian Zmasek posted to xml evolution by druvus on 2009-10-28 09:51:20 as along with 6 people and 1 group operon cisevol kshameer Geknitics phoenixzxl cmzmasek BergmanLab
	Genomics of Emerging Infectious Disease: A PLoS Collection [My Copy] PLoS Biol, Vol. 7, No. 10. (26 October 2009), e1000224. by Jonathan A. Eisen, Catriona J. MacCallum posted to pathogen by druvus on 2009-10-27 09:08:56 as along with 1 person tmmurali
	Computational Resources in Infectious Disease: Limitations and Challenges [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (26 October 2009), e1000481. by Eva C. Berglund, Björn Nystedt, Siv G. E. Andersson posted to pathogen opinion by druvus on 2009-10-27 09:08:15 as along with 2 people kshameer neils
	PathBuilder--open source software for annotating and developing pathway resources [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2860-2862. by Kumaran Kandasamy, Shivakumar Keerthikumar, Rajesh Raju, et al.T. S. Keshava Prasad, Y. L. Ramachandra, Sujatha Mohan, Akhilesh Pandey posted to pipeline pathway by druvus on 2009-10-26 08:44:27 as along with 5 people dullhunk kshameer dolchan guhjy renatomilani
	The evolution of the land plant life cycle [My Copy] New Phytologist, Vol. 9999, No. 9999. (2009) by Karl J. Niklas, Ulrich Kutschera posted to review plant by druvus on 2009-10-26 07:49:18 as
	SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. [My Copy] Molecular biology and evolution (23 October 2009), msp259. by Manolo Gouy, Stéphane Guindon, Olivier Gascuel posted to visualisation software next_generation alignment by druvus on 2009-10-26 07:46:59 as along with 1 person operon
	NGSView: an extensible open source editor for next-generation sequencing data. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp611. by Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub posted to visualisation next_generation browser by druvus on 2009-10-26 07:46:31 as along with 3 people operon heliopais n00c
	DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp612. by Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang posted to rna-seq r next_generation by druvus on 2009-10-26 07:45:00 as along with 6 people ramonvidal jmeppley heliopais GeeSharpMinor juokcho natstreet
	Knowledge-based data analysis comes of age [My Copy] Brief Bioinform (23 October 2009), bbp044. by Michael F. Ochs posted to knowledgebase by druvus on 2009-10-26 07:44:31 as along with 1 person ngehlenborg
	Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing [My Copy] Plant Physiol. (23 October 2009), pp.109.147280. by Li-Ching Hsieh, Shu-I Lin, Arthur C. Shih, et al.June-Wei Chen, Wei-Yi Lin, Ching-Ying Tseng, Wen-Hsiung Li, Tzyy-Jen Chiou posted to srna arabidopsis by druvus on 2009-10-26 07:42:57 as
	Annotation Confidence Score for Genome Annotation: A Genome Comparison Approach. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp613. by Youngik Yang, Donald Gilbert, Sun Kim posted to statistics annotation by druvus on 2009-10-26 07:42:26 as along with 4 people ramonvidal operon kevinzheng1983 kshameer
	Nme protein family evolutionary history, a vertebrate perspective [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 256. by Thomas Desvignes, Pierre Pontarotti, Christian Fauvel, Julien Bobe posted to proteome gene family by druvus on 2009-10-26 07:39:59 as
	[Identification and characterization of the Francisella sp. strain 08HL01032 isolated in air condition systems] [My Copy] Wei sheng wu xue bao = Acta microbiologica Sinica, Vol. 49, No. 8. (4 August 2009), pp. 1003-1010. by Pinghua Qu, Xiaoling Deng, Jian Zhang, et al.Jingdiao Chen, Jing Zhang, Quanxin Zhang, Yang Xiao, Shouyi Chen posted to francisella cantonensis by druvus on 2009-10-23 11:10:04 as
	Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations [My Copy] Genome Biology, Vol. 10, No. 10. (22 October 2009), R118. by Tom Conrad, Andrew Joyce, M. Kenyon Applebee, et al.Christian Barrett, Bin Xie, Yuan Gao, Bernhard Palsson posted to sequencing next_generation evolution ecoli by druvus on 2009-10-23 09:18:06 as along with 4 people and 1 group djkt venancio nzm operon iSEEM
	Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp602. by Yun Niu, David Otasek, Igor Jurisica posted to pubmed datamining annotation by druvus on 2009-10-23 08:46:39 as along with 1 person and 1 group henk-cul dbmi-nlp
	Ancestors 1.0: A Web Server For Ancestral Sequence Reconstruction [My Copy] Bioinformatics (22 October 2009), btp600. by Abdoulaye B. Diallo, Vladimir Makarenkov, Mathieu Blanchette posted to sequence evolution by druvus on 2009-10-23 08:45:45 as
	The gputools package enables GPU computing in R. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp608. by Joshua Buckner, Justin Wilson, Mark Seligman, Brian Athey, Stanley Watson, Fan Meng posted to r parallel gpu by druvus on 2009-10-23 08:45:26 as along with 5 people operon hughitt1 BlackPhoenix shigepong neils
	Sharing: guidelines go one step forwards, two steps back [My Copy] Nature, Vol. 461, No. 7267. (21 October 2009), pp. 1053-1053. by Jelte Wicherts, Marjan Bakker posted to datasharing by druvus on 2009-10-23 08:43:57 as along with 2 people mgaldino dullhunk
	Sharing: public databases combat mistrust and secrecy [My Copy] Nature, Vol. 461, No. 7267. (21 October 2009), pp. 1053-1053. by Andrew A. Farke, Michael P. Taylor, Mathew J. Wedel posted to datasharing by druvus on 2009-10-23 08:43:47 as along with 2 people mgaldino dullhunk
	Sharing: project will make climate data freely available to all [My Copy] Nature, Vol. 461, No. 7267. (21 October 2009), pp. 1053-1053. by Don Gunasekera posted to datasharing by druvus on 2009-10-23 08:43:28 as along with 1 person dullhunk
	Assigning roles to protein mentions: The case of transcription factors [My Copy] Journal of Biomedical Informatics, Vol. 42, No. 5. (10 October 2009), pp. 887-894. by Hui Yang, John Keane, Casey M. Bergman, Goran Nenadic posted to tf by druvus on 2009-10-23 08:43:18 as along with 3 people and 1 group operon dullhunk henk-cul dbmi-nlp
	Diagnostic procedures in tularaemia with special focus on molecular and immunological techniques. [My Copy] Journal of veterinary medicine. B, Infectious diseases and veterinary public health, Vol. 52, No. 6. (August 2005), pp. 249-261. by W. D. Splettstoesser, H. Tomaso, S. Al Dahouk, H. Neubauer, P. Schuff-Werner posted to francisella by druvus on 2009-10-22 13:28:31 as
	G-compass: A web-based comparative genome browser between human and other vertebrate genomes [My Copy] Bioinformatics (21 October 2009), btp594. by Yoshihiro Kawahara, Ryuichi Sakate, Akihiro Matsuya, et al.Katsuhiko Murakami, Yoshiharu Sato, Hao Zhang, Takashi Gojobori, Takeshi Itoh, Tadashi Imanishi posted to genome browser by druvus on 2009-10-22 10:38:16 as along with 4 people idonaldson kshameer operon neils
	Arabidopsis gene co-expression network and its functional modules [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 346. by Linyong Mao, John Van Hemert, Sudhansu Dash, Julie Dickerson posted to network module arabidopsis by druvus on 2009-10-21 16:19:12 as along with 3 people dolchan venancio Borelli
	Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome [My Copy] BMC Genomics, Vol. 7, No. 1. (13 June 2006), 150. by Vasily Tcherepanov, Angelika Ehlers, Chris Upton posted to software genome annotation by druvus on 2009-10-21 15:07:48 as along with 1 person and 1 group vwchan beta

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genome	390
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protease	1
proteat	1
proteom	1
provenance	1
psbs	1
pseudomonas	1
real_time_pcr	1
refseq	1
rflp	1
ribosome	1
rosids	1
rrecombination	1
ruby	1
salmonella	1
scientometrics	1
script	1
seldi	1
senescence	1
sequenceing	1
snv	1
soap	1
sql	1
statistic	1
sunflower	1
symfony	1
tantem	1
ticks	1
transfac	1
transposition	1
tularensis	1
vaccine	1
validation	1
viewer	1
visualsisation	1
wgcna	1
wheat	1
wolbachia	1

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