druvus's annotation [99 articles] Export

Recent papers added to druvus's library classified by the tag annotation. You can also see everyone's annotation.

	Annotation Confidence Score for Genome Annotation: A Genome Comparison Approach. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp613. by Youngik Yang, Donald Gilbert, Sun Kim posted to statistics annotation by druvus on 2009-10-26 07:42:26 as along with 4 people ramonvidal operon kevinzheng1983 kshameer
	Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp602. by Yun Niu, David Otasek, Igor Jurisica posted to pubmed datamining annotation by druvus on 2009-10-23 08:46:39 as along with 1 person and 1 group henk-cul dbmi-nlp
	Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome [My Copy] BMC Genomics, Vol. 7, No. 1. (13 June 2006), 150. by Vasily Tcherepanov, Angelika Ehlers, Chris Upton posted to software genome annotation by druvus on 2009-10-21 15:07:48 as along with 1 person and 1 group vwchan beta
	Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis [My Copy] PLoS ONE, Vol. 4, No. 7. (20 July 2009), e6291. by Peter Bakke, Nick Carney, Will DeLoache, et al.Mary Gearing, Kjeld Ingvorsen, Matt Lotz, Jay McNair, Pallavi Penumetcha, Samantha Simpson, Laura Voss, Max Win, Laurie J. Heyer, A. Malcolm Campbell posted to annotation by druvus on 2009-10-01 11:57:33 as along with 4 people and 1 group kiekyon renatomilani neils ppgardne Journal picks
	nGASP - the nematode genome annotation assessment project [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (19 December 2008), 549. by Avril Coghlan, Tristan Fiedler, Sheldon McKay, et al.Paul Flicek, Todd Harris, Darin Blasiar, the nGASP Consortium, Lincoln Stein posted to genome annotation by druvus on 2009-09-30 14:57:12 as along with 2 people ajbattle sujaikumar
	AUGUSTUS: a web server for gene finding in eukaryotes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W309-312. by Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern posted to genome annotation by druvus on 2009-09-30 14:56:27 as along with 1 person jmartin49
	AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_2. (1 July 2005), pp. W465-467. by Mario Stanke, Burkhard Morgenstern posted to software genome annotation by druvus on 2009-09-30 14:55:47 as along with 1 person wenhan
	Using native and syntenically mapped cDNA alignments to improve de novo gene finding [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 637-644. by Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler posted to genome annotation by druvus on 2009-09-30 14:55:12 as along with 4 people natstreet orzenil cdiwadkar GustavoLacerda
	Gene finding in novel genomes [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (14 May 2004), 59. by Ian Korf posted to genome annotation by druvus on 2009-09-30 14:48:45 as along with 7 people and 1 group jmartin49 LeightonP indigoviolet wenhan GustavoLacerda cmzmasek alexl EisenLab
	Exploration of Uncharted Regions of the Protein Universe [My Copy] PLoS Biol, Vol. 7, No. 9. (29 September 2009), e1000205. by Lukasz Jaroszewski, Zhanwen Li, Sri S. Krishna, et al.Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik posted to proteome annotation by druvus on 2009-09-29 08:52:40 as along with 5 people and 2 groups kiekyon CorinYeats carlk bpcusack ppgardne Orengo Group Journal Picks Journal picks
	CEAS: cis-regulatory element annotation system [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2605-2606. by Hyunjin Shin, Tao Liu, Arjun K. Manrai, X. Shirley Liu posted to chip-seq annotation by druvus on 2009-09-28 08:02:25 as along with 5 people maximilianh ewilban1 guhjy idonaldson nuin
	GISMO--gene identification using a support vector machine for ORF classification [My Copy] Nucl. Acids Res., Vol. 35, No. 2. (28 January 2007), pp. 540-549. by Lutz Krause, Alice C. McHardy, Tim W. Nattkemper, Alfred Puhler, Jens Stoye, Folker Meyer posted to prediction gene annotation by druvus on 2009-09-25 11:36:46 as
	Annotation of Bacterial and Archaeal Genomes: Improving Accuracy and Consistency [My Copy] Chemical Reviews, Vol. 107, No. 8. (1 August 2007), pp. 3431-3447. by Ross Overbeek, Daniela Bartels, Veronika Vonstein, Folker Meyer posted to review bacteria annotation by druvus on 2009-09-25 11:35:10 as along with 2 people sgoetz wenhan
	CoryneCenter - An online resource for the integrated analysis of corynebacterial genome and transcriptome data [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 55. by Heiko Neuweger, Jan Baumbach, Stefan Albaum, et al.Thomas Bekel, Michael Dondrup, Andrea Huser, Jorn Kalinowski, Sebastian Oehm, Alfred Puhler, Sven Rahmann, Jochen Weile, Alexander Goesmann posted to genome database bacteria annotation by druvus on 2009-09-25 11:34:27 as
	Development of joint application strategies for two microbial gene finders [My Copy] Bioinformatics, Vol. 20, No. 10. (1 July 2004), pp. 1622-1631. by Alice C. McHardy, Alexander Goesmann, Alfred Puhler, Folker Meyer posted to software gene annotation by druvus on 2009-09-25 11:16:46 as along with 2 people and 1 group azazello wenhan MBLAB
	Genomics of an extreme psychrophile, Psychromonas ingrahamii [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 210. by Monica Riley, James Staley, Antoine Danchin, et al.Ting Z. Wang, Thomas Brettin, Loren Hauser, Miriam Land, Linda Thompson posted to sequencing genome bacteria annotation by druvus on 2009-09-25 10:50:53 as along with 4 people kiekyon pansapiens MeganBarnett neils
	Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 6. (2009), S18. by Alvaro M. Barrio, Erik Lagercrantz, Goran Sperber, Jonas Blomberg, Erik B. Rudloff posted to visualisation sequence das annotation by druvus on 2009-09-07 14:23:43 as
	Large-scale prokaryotic gene prediction and comparison to genome annotation [My Copy] Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4322-4329. by Pernille Nielsen, Anders Krogh posted to prediction genome gene annotation by druvus on 2009-09-04 11:21:54 as along with 1 person jmartin49
	EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (2003), 21. by Thomas Larsen, Anders Krogh posted to software prediction gene annotation by druvus on 2009-09-04 11:21:14 as along with 3 people and 1 group jmartin49 azazello wenhan MBLAB
	Gene Characterization Index: Assessing the Depth of Gene Annotation [My Copy] PLoS ONE, Vol. 3, No. 1. (23 January 2008), e1440. by Danielle Kemmer, Raf M. Podowski, Dimas Yusuf, et al.Jochen Brumm, Warren Cheung, Claes Wahlestedt, Boris Lenhard, Wyeth W. Wasserman posted to bioinformatics annotation by druvus on 2009-08-24 08:24:33 as along with 1 person jdelcampo
	WeGAS: A Web-Based Microbial Genome Annotation System [My Copy] Bioscience, Biotechnology, and Biochemistry, Vol. 73, No. 1. (2009), pp. 213-216. by Daesang Lee, Hwajung Seo, Chankyu Park, Kiejung Park posted to genome bacteria annotation by druvus on 2009-08-21 09:25:52 as along with 1 person operon
	Collaborative annotation for context-aware retrieval [My Copy] In ESAIR '09: Proceedings of the WSDM '09 Workshop on Exploiting Semantic Annotations in Information Retrieval (2009), pp. 42-45. by Stefano Mizzaro, Elena Nazzi, Luca Vassena posted to semantic annotation by druvus on 2009-08-21 07:47:41 as along with 4 people diogomartins Lucavax ctl Mohan-S
	SNAD: sequence name annotation-based designer [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (14 August 2009), 251. by Igor Sidorov, Denis Reshetov, Alexander Gorbalenya posted to sequence annotation by druvus on 2009-08-17 07:14:11 as
	ANNIE: integrated de novo protein sequence annotation [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W435-440. by Hong S. Ooi, Chia Y. Kwo, Michael Wildpaner, et al.Fernanda L. Sirota, Birgit Eisenhaber, Sebastian Maurer-Stroh, Wing C. Wong, Alexander Schleiffer, Frank Eisenhaber, Georg Schneider posted to annotation proteome by druvus on 2009-07-28 11:35:03 as along with 5 people nlapalu Thaverkamp dullhunk guhjy renatomilani
	Incorporating rich background knowledge for gene named entity classification and recognition [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (17 July 2009), 223. by Yanpeng Li, Hongfei Lin, Zhihao Yang posted to annotation plant by druvus on 2009-07-23 10:10:51 as along with 2 people and 2 groups henk-cul Effie dbmi-nlp NaCTeM
	The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes. [My Copy] Plant methods, Vol. 5, No. 1. (2009), 8. by James C. Estill, Jeffrey L. Bennetzen posted to annotation genome pipeline plant by druvus on 2009-07-22 12:01:12 as along with 3 people operon orzenil natstreet
	New mutant phenotype data curation system in the Saccharomyces Genome Database [My Copy] Database, Vol. 2009, No. 0. (26 March 2009), bap001. by Maria C. Costanzo, Marek S. Skrzypek, Robert Nash, et al.Edith Wong, Gail Binkley, Stacia R. Engel, Benjamin Hitz, Eurie L. Hong, J. Michael Cherry, the Saccharomyces Genome Database Project posted to annotation database gmod yeast by druvus on 2009-07-22 11:47:52 as
	Gramene QTL database: development, content and applications [My Copy] Database, Vol. 2009, No. 0. (12 May 2009), bap005. by Junjian Ni, Anuradha Pujar, Ken Youens-Clark, et al.Immanuel Yap, Pankaj Jaiswal, Isaak Tecle, Chih-Wei Tung, Liya Ren, William Spooner, Xuehong Wei, Shuly Avraham, Doreen Ware, Lincoln Stein, Susan Mccouch posted to annotation database gramene qtl by druvus on 2009-07-22 11:47:22 as along with 2 people and 1 group Keywan natstreet Ondex SABR - Bioenergy project
	Evidence-based gene predictions in plant genomes [My Copy] Genome Research, Vol. 19, No. 10. (18 October 2009), pp. 1912-1923. by Chengzhi Liang, Long Mao, Doreen Ware, Lincoln Stein posted to annotation plant by druvus on 2009-07-22 11:31:44 as along with 3 people megraw natstreet kshameer
	IMG ER: a system for microbial genome annotation expert review and curation. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2271-2278. by Victor M. Markowitz, Konstantinos Mavromatis, Natalia N. Ivanova, I-Min M. Chen, Ken Chu, Nikos C. Kyrpides posted to annotation curation genome pipeline by druvus on 2009-07-07 09:57:54 as along with 3 people Thaverkamp neils natstreet
	DIYA: a bacterial annotation pipeline for any genomics lab. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 962-963. by Andrew C. Stewart, Brian Osborne, Timothy D. Read posted to annotation bacteria by druvus on 2009-06-15 12:53:12 as along with 5 people azazello jamselem robfsouza dswan jmeppley
	How to Get the Most out of Your Curation Effort [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000391. by Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur posted to annotation curation by druvus on 2009-05-25 09:54:57 as along with 16 people and 4 groups daveGerrard CorinYeats abhishek_tiwari daforerog klexa lptolik kiekyon badger_master sobolevnrm martingerner cisevol AlexBateman VGreiff allysonlister fgibson dullhunk Orengo Group Journal Picks baker-group BergmanLab Journal picks
	Quantitative Measures for the Management and Comparison of Annotated Genomes [My Copy] BMC Bioinformatics, Vol. 10 (23 February 2009), 67. by Karen, Mark Yandell posted to annotation genome statistics by druvus on 2009-02-24 08:13:51 as along with 3 people and 1 group jmeppley timflutre stajich Mycology
	The Biocurator: Connecting and Enhancing Scientific Data [My Copy] PLoS Comput Biol, Vol. 2, No. 10. (27 October 2006), e125. by Nima Salimi, Randi Vita posted to annotation comment curation by druvus on 2009-02-23 11:26:09 as along with 2 people abhishek_tiwari hpiwowar
	Annotations for all by all - the BioSapiens network. [My Copy] Genome biology, Vol. 10, No. 2. (10 February 2009) by Janet Thornton, posted to annotation human by druvus on 2009-02-10 15:23:37 as along with 4 people guhjy niallhaslam Keywan dullhunk
	Annotating Noncoding RNA Genes. [My Copy] Annu Rev Genomics Hum Genet (21 May 2007) by Sam Griffiths-Jones posted to annotation mirna by druvus on 2009-02-09 11:18:24 as along with 4 people natstreet myrtilus guhjy wenhan
	Annotating non-coding RNAs with Rfam. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 12 (April 2005) by S. Griffiths-Jones posted to annotation mirna by druvus on 2009-02-09 11:17:48 as along with 1 person natstreet
	AgBase: a unified resource for functional analysis in agriculture [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D599-D603. by Mccarthy, M. Fiona, Bridges, et al.M. Susan, Wang, Nan, Magee, G. Bryce, Williams, W. Paul, Luthe, S. Dawn, Burgess, C. Shane posted to annotation genome plant by druvus on 2009-02-04 08:36:49 as along with 1 person sgoetz
	Protein function annotation by homology-based inference [My Copy] Genome Biology, Vol. 10, No. 2. (2009) by Yaniv Loewenstein, Domenico Raimondo, Oliver Redfern, et al.James Watson, Dmitrij Frishman, Michal Linial, Christine Orengo, Janet Thornton, Anna Tramontano posted to annotation homology proteome by druvus on 2009-02-02 17:02:56 as along with 3 people Keywan idoerg nyyu
	Sequence-based feature prediction and annotation of proteins. [My Copy] Genome biology, Vol. 10, No. 2. (2 February 2009) by Agnieszka S. Juncker, Lars J. Jensen, Andrea Pierleoni, et al.Andreas Bernsel, Michael L. Tress, Peer Bork, Gunnar von Heijne, Alfonso Valencia, Christos A. Ouzounis, Rita Casadio, Søren Brunak posted to annotation proteat sequence by druvus on 2009-02-02 17:00:57 as along with 5 people larsjuhljensen kgutwin nyyu shwu neils
	Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 1. (2007) by Nunzio D'Agostino, Alessandra Traini, Luigi Frusciante, Maria Chiusano posted to annotation genome by druvus on 2009-01-30 14:35:43 as along with 1 person natstreet
	Identifying protein-coding genes in genomic sequences [My Copy] Genome Biology, Vol. 10, No. 1. (30 January 2009), 201. by Jennifer Harrow, Alinda Nagy, Alexandre Reymond, et al.Tyler Alioto, Laszlo Patthy, Stylianos Antonarakis, Roderic Guigo posted to annotation genome proteome by druvus on 2009-01-30 14:03:16 as along with 14 people and 2 groups jfr antonkratz robfsouza nlapalu renatomilani ArtemPankin hpaces guhjy michaelbarton idoerg jm12 pawelszczesny natstreet barriot Bioinformatics Khavkin's lab
	The Genome Reverse Compiler: an explorative annotation tool [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 35. by Andrew Warren, Joao Setubal posted to annotation genome software by druvus on 2009-01-28 08:57:18 as along with 8 people and 2 groups jfr guhjy nuin natstreet Zephyrus idoerg cisevol behindtherabbit Roswell Cancer Crosstalk BergmanLab
	If you build it, they might come [My Copy] Nature Reviews Microbiology, Vol. 7, No. 2., pp. 90-90. by Roy Welch, Laura Welch posted to annotation by druvus on 2009-01-26 11:12:39 as along with 2 people behindtherabbit dullhunk
	ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. [My Copy] BMC bioinformatics, Vol. 10 (23 January 2009), 30. by B. H. van den Berg, J. H. Konieczka, F. M. McCarthy, S. C. Burgess posted to annotation microarray pipeline by druvus on 2009-01-26 08:33:42 as along with 3 people guhjy jfr natstreet
	Pfam 10 years on: 10 000 families and still growing. [My Copy] Brief Bioinform (15 March 2008) by Stephen John J. Sammut, Robert D D. Finn, Alex Bateman posted to annotation domain pfam proteome by druvus on 2009-01-21 12:42:06 as along with 3 people dullhunk renatomilani neils
	InterPro and InterProScan: Tools for Protein Sequence Classification and Comparison. [My Copy] Methods Mol Biol, Vol. 396 (2007), pp. 59-70. by N. Mulder, R. Apweiler posted to annotation domain predictions proteome by druvus on 2009-01-21 12:41:29 as along with 2 people azazello DNAReplication
	Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics [My Copy] Bioinformatics, Vol. 21, No. 3. (01 February 2005), 293. by Daniel H. Haft, Jeremy D. Selengut, Nikhat Zafar, Owen White posted to annotation comperative_genomics genome prokaryote by druvus on 2009-01-21 12:35:56 as along with 2 people barriot wenhan
	TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D260-D264. by Selengut, D. Jeremy, Haft, et al.H. Daniel, Davidsen, Tanja, Ganapathy, Anurhada, Gwinn-Giglio, Michelle, Nelson, C. William, Richter, R. Alexander, White, Owen posted to annotation hmm proteome by druvus on 2009-01-21 12:34:05 as
	In silico characterization of proteins: UniProt, InterPro and Integr8. [My Copy] Molecular biotechnology, Vol. 38, No. 2. (February 2008), pp. 165-177. by N. J. Mulder, P. Kersey, M. Pruess, R. Apweiler posted to annotation proteome by druvus on 2009-01-19 16:26:56 as along with 1 person guhjy

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genome	390
software	375
evolution	279
phylogeny	270
statistics	221
review	211
bacteria	188
database	173
francisella	162
proteome	160
repeat	158
next_generation	149
plant	140
tandem	124
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marker	106
network	104
annotation	99
semantic	97
wms	95
bioinformatics	90
population	89
comperative_genomics	82
tf	81
sequence	79
populus	71
mirna	69
gene	66
genetics	66
algorithm	60
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snp	57
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microarray	54
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arabidopsis	52
r	51
web_20	51
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est	47
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pcr	39
synthetic_biology	38
indel	37
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distance	35
ecoli	35
mutation	35
454	34
likelihood	33
ortholog	33
taverna	33
motif	32
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ontology	30
references	30
wiki	30
coalescent	29
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rice	27
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browser	25
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ssr	25
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domain	21
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tom	21
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blast	13
comment	13
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vntr	13
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geography	12
hmm	12
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solexa	12
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binding	11
datasharing	11
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human	11
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anthrax	10
cis	10
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parallel	10
pubmed	10
repeats	10
clostridium	9
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das	9
module	9
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writing	9
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biomoby	7
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uorf	3
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chado	2
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drupal	2
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gsea	2
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kegg	2
kernel	2
lab_book	2
linkage_disequilibrium	2
linux	2
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metapopulation	2
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mouse	2
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ontologies	2
owl	2
perl	2
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plasmid	2
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pulsed-field	2
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regulon	2
rest	2
rnai	2
schu	2
spruce	2
timeserie	2
vector	2
venn	2
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xml	2
affymetrix	1
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agents	1
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anthocyanin	1
apple	1
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c	1
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convert	1
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fuzzy	1
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i	1
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its	1
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phy	1
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ruby	1
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tularensis	1
vaccine	1
validation	1
viewer	1
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wgcna	1
wheat	1
wolbachia	1

druvus's annotation [99 articles] Export

druvus's tags