druvus's assembly [55 articles] Export

Recent papers added to druvus's library classified by the tag assembly. You can also see everyone's assembly.

	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to review next_generation assembly alignment by druvus on 2009-11-02 09:11:39 as along with 15 people and 1 group idoerg ajsferreira pst owenlancaster robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 chvlyl GeeSharpMinor n00c venancio desany Orengo Group Journal Picks
	The phusion assembler. [My Copy] Genome research, Vol. 13, No. 1. (1 January 2003), pp. 81-90. by James C. Mullikin, Zemin Ning posted to genome assembly by druvus on 2009-10-02 17:46:53 as along with 7 people icq242500260 n00c natstreet bpb wenhan dmc azazello
	De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R94. by Scott DiGuistini, Nancy Liao, Darren Platt, et al.Gordon Robertson, Michael Seidel, Simon Chan, T. Roderick Docking, Inanc Birol, Robert Holt, Martin Hirst, Elaine Mardis, Marco Marra, Richard Hamelin, Jorg Bohlmann, Colette Breuil, Steven Jones posted to next_generation fungi assembly by druvus on 2009-09-15 10:52:11 as along with 11 people and 2 groups n00c orzenil GustavoLacerda sotacam gillianturgeon natstreet jamselem sujaikumar kiekyon ppgardne stajich Journal picks Mycology
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to next_generation metagenomics assembly by druvus on 2009-08-31 11:39:23 as along with 7 people and 1 group dakelley kinestetika ThomasDOtto jasontsai skembel sharpton jmeppley iSEEM
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to next_generation genome assembly by druvus on 2009-08-27 18:09:15 as along with 20 people and 2 groups n00c davidmam klo operon fstrozzi kiekyon torfinnnome dakelley jamselem err129 djkt darian APRegier thegoose danmaclean stajich natstreet neils GustavoLacerda avilella Mycology Journal picks
	Maximum likelihood genome assembly. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (August 2009), pp. 1101-1116. by Paul Medvedev, Michael Brudno posted to assembly genome likelihood by druvus on 2009-08-03 07:39:10 as along with 7 people dakelley nuin walshtp djkt n00c natstreet operon
	De Novo Next Generation Sequencing of Plant Genomes [My Copy] Rice, Vol. 2, No. 1. (1 March 2009), pp. 35-43. by Steve Rounsley, Pradeep Marri, Yeisoo Yu, et al.Ruifeng He, Nick Sisneros, Jose Goicoechea, So Lee, Angelina Angelova, Dave Kudrna, Meizhong Luo, Jason Affourtit, Brian Desany, James Knight, Faheem Niazi, Michael Egholm, Rod Wing posted to assembly genome plant rice by druvus on 2009-07-27 14:05:58 as along with 5 people Jporci ramonvidal GustavoLacerda natstreet orzenil
	A fast hybrid short read fragment assembly algorithm [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2279-2280. by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi posted to assembly next_generation by druvus on 2009-07-07 09:57:22 as along with 16 people and 2 groups torfinnnome hzoltan cthachuk orzenil GustavoLacerda APRegier dakelley katholt GeeSharpMinor dayjm djkt dswan pachorip natstreet n00c jmeppley Bioinformatics Journal picks
	De novo transcriptome assembly with ABySS [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2872-2877. by Inanc Birol, Shaun D. Jackman, Cydney B. Nielsen, et al.Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones posted to assembly next_generation by druvus on 2009-06-16 09:55:04 as along with 10 people n00c dswan dakelley torfinnnome TRHvidsten rtogawa ramonvidal stubrown darshan GustavoLacerda
	Scaffolding and validation of bacterial genome assemblies using optical restriction maps [My Copy] Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1229-1235. by Niranjan Nagarajan, Timothy D. Read, Mihai Pop posted to assembly bacteria by druvus on 2009-06-02 16:12:00 as
	Hierarchical Scaffolding With Bambus [My Copy] Genome Research, Vol. 14, No. 1. (January 2004), pp. 149-159. by Mihai Pop, Daniel S. Kosack, Steven L. Salzberg posted to assembly by druvus on 2009-06-02 16:05:08 as along with 4 people and 1 group dakelley azazello wenhan Neeperando MBLAB
	Whole genome assembly from 454 sequencing output via modified DNA graph concept [My Copy] Computational Biology and Chemistry, Vol. 33, No. 3. (04 June 2009), pp. 224-230. by Jacek Blazewicz, Marcin Bryja, Marek Figlerowicz, et al.Piotr Gawron, Marta Kasprzak, Edward Kirton, Darren Platt, Jakub Przybytek, Aleksandra Swiercz, Lukasz Szajkowski posted to assembly next_generation sequencing by druvus on 2009-06-01 09:08:31 as along with 5 people and 1 group n00c GustavoLacerda stajich orzenil natstreet Mycology
	Tracembler - software for in-silico chromosome walking in unassembled genomes [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 May 2007), 151. by Qunfeng Dong, Matthew Wilkerson, Volker Brendel posted to assembly genome insilico by druvus on 2009-04-16 16:26:19 as along with 3 people cmzmasek APRegier iris42
	PALMA: mRNA to genome alignments using large margin algorithms [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1892-1900. by Uta Schulze, Bettina Hepp, Cheng S. Ong, Gunnar Ratsch posted to assembly est by druvus on 2009-04-16 14:01:10 as along with 6 people and 1 group n00c thegoose2 natstreet tharris cjeans GustavoLacerda C. elegans / WormBase
	BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome sequence. [My Copy] BMC research notes, Vol. 2, No. 1. (22 January 2009) by James E. Koltes, Zhi-Liang L. Hu, Eric Fritz, James M. Reecy posted to assembly blast next_generation by druvus on 2009-04-16 12:13:43 as along with 1 person guhjy
	Sequence assembly [My Copy] Computational Biology and Chemistry, Vol. 33, No. 2. (April 2009), pp. 121-136. by K. Scheibye-Alsing, S. Hoffmann, A. Frankel, et al.P. Jensen, P. F. Stadler, Y. Mang, N. Tommerup, M. J. Gilchrist, A. B. Nygård, S. Cirera posted to assembly next_generation review by druvus on 2009-04-16 11:04:29 as along with 8 people GustavoLacerda n00c katholt orzenil guhjy natstreet Thaverkamp robsyme
	Crystallizing short-read assemblies around seeds. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by M. S. Hossain, N. Azimi, S. Skiena posted to assembly next_generation by druvus on 2009-04-16 09:15:20 as along with 2 people n00c natstreet
	Short read DNA fragment anchoring algorithm [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 1. (2009), S17. by Wendi Wang, Peiheng Zhang, Xinchun Liu posted to assembly next_generation by druvus on 2009-04-15 13:39:13 as along with 1 person n00c
	Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs [My Copy] Genome Research, Vol. 14, No. 6. (June 2004), pp. 1147-1159. by Bastien Chevreux, Thomas Pfisterer, Bernd Drescher, et al.Albert J. Driesel, Werner E. G. MÃ¼ller, Thomas Wetter, SÃ¡ndor Suhai posted to assembly est by druvus on 2009-04-15 11:45:26 as along with 2 people rneches Ayest
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to assembly bacteria next_generation by druvus on 2009-04-15 09:22:15 as along with 15 people and 4 groups n00c GeeSharpMinor pachorip operon dakelley acn nmohelli GustavoLacerda jmeppley stajich azazello Katje iris42 balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen Mycology gatech-compgenomics
	Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou posted to assembly next_generation by druvus on 2009-04-15 09:21:27 as along with 12 people and 1 group n00c APRegier jessopher natstreet idoerg dakelley GustavoLacerda orzenil guhjy azazello nedwards iris42 gatech-compgenomics
	Profiling model T cell metagenomes with short reads [My Copy] Bioinformatics (9 January 2009), btp010. by Rene L. Warren, Brad H. Nelson, Robert A. Holt posted to assembly mapping next_generation by druvus on 2009-04-15 08:42:59 as along with 2 people jonilaserson rschulz
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted to assembly mapping next_generation by druvus on 2009-04-15 08:42:30 as along with 19 people and 2 groups jfr azazello hzoltan cthachuk GustavoLacerda jasontsai n00c nuin dakelley skembel Thaverkamp reyez TRHvidsten djkt hpaces APRegier pengchy natstreet darian iSEEM Bioinformatics
	Finding optimal threshold for correction error reads in DNA assembling [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 1. (2009), S15. by Francis Chin, Henry Leung, Wei L. Li, Siu M. Yiu posted to assembly next_generation statistics by druvus on 2009-04-14 15:36:30 as
	Compressed indexing and local alignment of DNA [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 791-797. by T. W. Lam, W. K. Sung, S. L. Tam, C. K. Wong, S. M. Yiu posted to assembly indexing by druvus on 2009-04-14 14:12:38 as along with 6 people gbenson n00c xwbcn antonkratz cap1 lp2
	Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. [My Copy] Nature methods, Vol. 6, No. 4. (15 April 2009), pp. 291-295. by Iwanka Kozarewa, Zemin Ning, Michael A. Quail, Mandy J. Sanders, Matthew Berriman, Daniel J. Turner posted to assembly illumina mapping next_generation by druvus on 2009-04-14 13:47:34 as along with 6 people mkiyer guhjy inesdesantiago natstreet athma jbhiatt
	FragIdent--automatic identification and characterisation of cDNA-fragments. [My Copy] BMC genomics, Vol. 10 (02 March 2009), 95. by D. Seelow, H. Goehler, K. Hoffmann posted to assembly sequencing software by druvus on 2009-03-16 13:14:41 as along with 2 people natstreet guhjy
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to assembly next_generation by druvus on 2009-03-13 09:15:12 as along with 26 people and 2 groups jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling rpatward dswan stajich jbhiatt erikarner BergmanLab Mycology
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to assembly next_generation sequencing by druvus on 2009-03-04 11:12:15 as along with 37 people and 4 groups nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd polivares torfinnnome n00c talponer jmcq rschulz ghattem operon humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	QSRA: a quality-value guided de novo short read assembler. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by D. W. Bryant, W. K. Wong, T. C. Mockler posted to assembly next_generation by druvus on 2009-02-25 08:00:46 as along with 10 people and 2 groups hzoltan GustavoLacerda GeeSharpMinor jfr n00c dakelley pengchy natstreet stajich idoerg Bioinformatics Mycology
	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae [My Copy] Genome research In Genome Research, Vol. 19, No. 2. (17 February 2009), pp. 294-305. by Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, Jeffery L. Dangl posted to assembly genome next_generation sequencing by druvus on 2009-02-23 10:02:18 as along with 14 people and 2 groups n00c michaelbarton pachorip ThomasDOtto robsyme orzenil AaronDarling dakelley Huub_odc usagi-kirin abizar acn jbhiatt hpaces SIMR bioinformatics Bioinformatics
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to assembly bacteria next_generation by druvus on 2009-02-23 09:59:18 as along with 17 people n00c pachorip APRegier thegoose2 dakelley Neeperando hpaces idoerg jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	The Genome Sequencer FLX™ System—Longer reads, more applications, straight forward bioinformatics and more complete data sets [My Copy] Journal of Biotechnology, Vol. 136, No. 1-2. (31 August 2008), pp. 3-10. by M. Droege, B. Hill posted to 454 assembly next_generation sequencing by druvus on 2009-02-23 09:53:13 as along with 6 people thegoose n00c katholt daed floatingpoint GustavoLacerda
	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to assembly genome mapping sequencing by druvus on 2009-02-23 09:51:32 as along with 12 people and 1 group GustavoLacerda darshan n00c natstreet lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Ema Neeperando SIMR bioinformatics
	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to assembly genome mapping next_generation sequencing by druvus on 2009-02-23 09:48:51 as along with 17 people hzoltan bozdagd fishtank burak ThomasDOtto n00c mmartin natstreet adijr felsani xingxu azazello orzenil dswan pengchy cthachuk nuin
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to assembly mapping next_generation sequencing by druvus on 2009-02-23 09:47:26 as along with 38 people and 2 groups seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. i32-40. by Iman Hajirasouliha, Fereydoun Hormozdiari, S. Cenk Sahinalp, Inanc Birol posted to assembly genome next_generation sequencing by druvus on 2009-02-23 09:45:19 as along with 7 people manduca n00c orzenil babakap kittipat reyez Neeperando
	Assembly reconciliation [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 42-45. by Aleksey V. Zimin, Douglas R. Smith, Granger Sutton, James A. Yorke posted to assembly genome next_generation by druvus on 2009-02-23 09:44:15 as along with 6 people n00c dakelley jsatkosk orzenil Neeperando GustavoLacerda
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to assembly genome next_generation by druvus on 2009-02-23 09:43:18 as along with 17 people and 2 groups GustavoLacerda n00c APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet azazello acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	Genome resequencing and genetic variation [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 1. (01 January 2008), pp. 65-66. by Michael Stratton posted to assembly genome next_generation by druvus on 2009-02-23 09:42:54 as along with 6 people and 1 group n00c MarkFiers orzenil Ayest natstreet psique parkinson's disease references
	Consensus generation and variant detection by Celera Assembler [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1035-1040. by Gennady Denisov, Brian Walenz, Aaron L. Halpern, et al.Jason Miller, Nelson Axelrod, Samuel Levy, Granger Sutton posted to assembly next_generation by druvus on 2009-02-23 09:42:33 as along with 6 people n00c dakelley orzenil natstreet nmohelli semrich
	SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1697-1706. by J. C. Dohm, C. Lottaz, T. Borodina, H. Himmelbauer posted to 454 assembly solexa by druvus on 2009-01-12 09:46:00 as along with 16 people and 2 groups operon n00c robsyme dakelley acn nmohelli natstreet timflutre stajich ghattem azazello GustavoLacerda niallhaslam flexer jwhitney iris42 DeNovoAssembly-SIMR Mycology
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research In Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to 454 assembly solexa by druvus on 2009-01-12 09:45:37 as along with 42 people and 3 groups ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to 454 assembly solexa by druvus on 2009-01-12 09:44:54 as along with 23 people and 1 group ajsferreira n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley stajich azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses [My Copy] Bioinformatics (6 January 2009), btp011. by Michael S. Barker, Katrina M. Dlugosch, Reddy, Sarah N. Amyotte, Loren H. Rieseberg posted to 454 assembly evolution population solexa by druvus on 2009-01-12 08:18:35 as along with 5 people semrich jmeppley felsani jasontsai djkt
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to 454 assembly by druvus on 2008-12-15 12:43:54 as along with 17 people and 1 group n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt hpaces GustavoLacerda stajich Mycology
	Genome assembly, rearrangement, and repeats. [My Copy] Chemical reviews, Vol. 107, No. 8. (August 2007), pp. 3391-3406. by H. Tang posted to assembly genome repeat by druvus on 2008-12-03 14:53:43 as along with 1 person orzenil
	The TIGR Plant Transcript Assemblies database. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007), pp. D846-D851. by Kevin L. Childs, John P. Hamilton, Wei Zhu, et al.Eugene Ly, Foo Cheung, Hank Wu, Pablo D. Rabinowicz, Chris D. Town, C. Robin Buell, Agnes P. Chan posted to assembly est plant by druvus on 2008-12-02 09:13:38 as along with 2 people mlog natstreet
	Hawkeye: an interactive visual analytics tool for genome assemblies [My Copy] Genome Biology, Vol. 8, No. 3. (09 March 2007), R34. by Michael Schatz, Adam Phillippy, Ben Shneiderman, Steven Salzberg posted to assembly genome visualisation by druvus on 2008-11-03 10:04:34 as along with 11 people and 2 groups darian n00c joule Thaverkamp hpaces orzenil GustavoLacerda natstreet stajich azazello Neeperando Mycology gatech-compgenomics
	EagleView: A genome assembly viewer for next-generation sequencing technologies [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1538-1543. by Weichun Huang, Gabor Marth posted to 454 assembly genome by druvus on 2008-11-03 10:02:36 as along with 15 people Thaverkamp imaginatio hpaces darian n00c xingxu natstreet abizar balicea bcondon fpattyn APRegier Neeperando GustavoLacerda guhjy

Note: You may cite this page as: http://www.citeulike.org/user/druvus/tag/assembly

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genome	396
software	380
evolution	282
phylogeny	270
statistics	221
review	211
bacteria	189
database	179
francisella	165
proteome	160
next_generation	158
repeat	158
plant	142
tandem	124
alignment	122
marker	106
network	104
annotation	101
wms	99
semantic	97
bioinformatics	90
population	89
tf	84
comperative_genomics	82
populus	81
sequence	80
mirna	69
gene	68
genetics	66
algorithm	60
visualisation	59
snp	58
classification	58
pathogen	56
microarray	56
assembly	55
arabidopsis	52
r	52
web_20	51
sequencing	51
est	47
pipeline	47
predictions	44
mapping	40
genetic	39
pcr	39
synthetic_biology	39
indel	37
ecoli	36
model	36
ortholog	35
distance	35
mutation	35
454	34
ontology	34
likelihood	33
taverna	33
motif	32
metagenomics	31
bayesian	30
references	30
wiki	30
family	30
coalescent	29
rice	27
clustering	26
expression	26
simulation	25
browser	25
ssr	25
microbial_forensics	23
biodefense	22
synteny	22
selection	21
domain	21
tom	21
srna	20
gmod	20
testing	20
genomics	19
stress	18
own_publications	18
duplication	18
polymorphism	18
mycobacterium	18
target	18
bacillus	17
promoter	16
pathway	16
multivariate	15
datasharing	15
book	15
homology	15
environmental	14
primer	14
virulence	14
comment	14
blast	13
prokaryote	13
vntr	13
ricinus	12
transcription	12
semantic_web	12
hmm	12
geography	12
co-regulated	12
solexa	12
mitocondria	11
mvla	11
clostridium	11
development	11
recombination	11
binding	11
human	11
pubmed	10
curation	10
eukaryote	10
drosophila	10
das	10
repeats	10
cis	10
pangenome	10
parallel	10
anthrax	10
bioconductor	9
cytoscape	9
virus	9
module	9
spatial	9
metabolomics	9
web_service	9
writing	9
qtl	8
rna-seq	8
rdf	8
grid	8
indels	8
systems_biology	8
fish	8
ncrna	7
consensus	7
opinion	7
chloroplast	7
biomoby	7
illumina	7
open-access	7
forensics	7
pestis	7
coxiella	7
insilico	7
text-mining	7
yeast	7
alignment-free	7
island	7
genbank	6
mlst	6
species	6
coexpression	6
organisation	6
report	6
grape	6
svm	6
paralog	6
transposon	6
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interaction	5
image	5
design	5
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markov	5
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tularemia	5
sirna	5
mlva	5
framework	5
knowledgebase	5
rickettsia	5
disease	5
rna	5
machine_learning	5
biomart	5
cloud	4
web	4
tomato	4
normalization	4
leaf	4
fungal	4
open_source	4
authorship	4
rearrangement	4
toxin	4
soil	4
divergence	4
medicago	4
mygrid	4
teaching	4
q-fever	4
management	4
duplicated	4
tissue	3
knowledge	3
pseudogenes	3
python	3
association_mapping	3
tularaemia	3
biofuel	3
pooling	3
phenotype	3
clonal	3
maize	3
structure	3
pattern	3
grass	3
adaptation	3
drupal	3
soybean	3
16s	3
uorf	3
sharing	3
markers	3
ancestral	3
stratification	3
phylogenomics	3
splicing	3
molecular	3
phytoremediation	3
mesh	3
signature	3
taxonomy	3
philomiragia	3
languange	3
php	3
chip-seq	3
genotype	3
pca	3
kernel	2
xml	2
linux	2
owl	2
comunity	2
datamining	2
mouse	2
metapopulation	2
genetical_genomics	2
crispr	2
fitness	2
gsea	2
web_services	2
non-coding	2
schu	2
cotton	2
endophyte	2
quality_data	2
eucalyptus	2
barcode	2
hormone	2
codeigniter	2
ensembl	2
mutant	2
plasmid	2
full-length	2
mutants	2
spruce	2
salmonella	2
meta-analysis	2
enrichment	2
plants	2
vector	2
polyploid	2
rest	2
correlation	2
rnai	2
linkage_disequilibrium	2
blog	2
base_calling	2
chado	2
endosymbiont	2
announcement	2
kegg	2
fungi	2
barley	2
photosynthesis	2
piscirickettsia	2
biomass	2
genomic	2
perl	2
holartica	2
indexing	2
ontologies	2
mutual_information	2
lab_book	2
detection	2
pulsed-field	2
timeserie	2
regulon	2
education	2
cloning	2
venn	2
community_intelligence	2
mapman	2
migration	2
gene_ontology	2
psbs	1
provenance	1
genomis	1
mosquito	1
geneticics	1
brucella	1
integration	1
scientometrics	1
cod	1
future_plans	1
wolbachia	1
protease	1
phy	1
novicida	1
mir-396	1
fuzzy	1
sunflower	1
gmo	1
biotic	1
daphnia	1
pseudomonas	1
peptide	1
ft_ir	1
aflp	1
nucleotide	1
metal	1
seldi	1
membrane	1
apple	1
ruby	1
microbial_communities	1
mod	1
proteom	1
human_genome	1
genes	1
mcl	1
pinus	1
fangia	1
probabilistic	1
iron_limitation	1
imputation	1
collaborations	1
de_novo	1
bias	1
diversity	1
lrt	1
career	1
brassica	1
java	1
mosquitoes	1
its	1
cantonensis	1
artemis	1
vaccine	1
fdr	1
tularensis	1
gpu	1
affymetrix	1
viewer	1
gwa	1
intron	1
transfac	1
rflp	1
rrecombination	1
i	1
senescence	1
linear_models	1
microscope	1
opls	1
oligo	1
c	1
transposition	1
parser	1
automation	1
gis	1
isolation	1
sequenceing	1
rosids	1
ticks	1
script	1
ribosome	1
distane	1
methods	1
symfony	1
endophyt	1
mutation_rate	1
gramene	1
knowledge_management	1
proteat	1
horizontal_gene_transfer	1
moby	1
impact	1
benchmark	1
modules	1
alias	1
bisulphite	1
sql	1
snv	1
cassava	1
alfresco	1
malaria	1
pfam	1
co2	1
wheat	1
condor	1
orthology	1
coding	1
pine	1
statistic	1
refseq	1
funding	1
dart	1
anthocyanin	1
pce	1
soap	1
matlab	1
gbrowse	1
real_time_pcr	1
caps	1
convert	1
intermine	1
biosecurity	1
methylation	1
mrna	1
agents	1
humal	1
mediawiki	1
artifacts	1
tantem	1
validation	1
visualsisation	1
wgcna	1

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