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	Clustering of protein domains for functional and evolutionary studies. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 335. by Pavle Goldstein, Jurica Zucko, Dusica Vujaklija, et al.Anita Krisko, Daslav Hranueli, Paul F. Long, Catherine Etchebest, Bojan Basrak, John Cullum posted to proteome family clustering classification by druvus on 2009-10-19 12:58:50 as along with 5 people and 2 groups sillitoe kshameer ppgardne zwang phoenixzxl Orengo Group Journal Picks Journal picks
	Response to comment on 'MeSH-up: effective MeSH text classification for improved document retrieval' [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), 2772. by Dolf Trieschnigg, Piotr Pezik, Vivian Lee, Franciska de Jong, Wessel Kraaij, Dietrich Rebholz-Schuhmann posted to references mesh classification by druvus on 2009-10-13 10:50:15 as along with 3 people Gaetan dullhunk reyez
	Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval' [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2770-2771. by Aurelie Neveol, James G. Mork, Alan R. Aronson posted to references mesh classification by druvus on 2009-10-13 10:50:12 as along with 5 people artaban421 dullhunk reyez Gaetan lmichan
	MeSH Up: effective MeSH text classification for improved document retrieval [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1412-1418. by Dolf Trieschnigg, Piotr Pezik, Vivian Lee, Franciska de Jong, Wessel Kraaij, Dietrich Rebholz-Schuhmann posted to references mesh classification by druvus on 2009-10-13 10:49:09 as along with 12 people and 1 group gavinhoran artaban421 lmichan msampson cwperth guhjy sobolevnrm lptolik mitko Gaetan fgibson dullhunk baker-group
	Enhancing navigation in biomedical databases by community voting and database-driven text classification [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 317. by Timo Duchrow, Timur Shtatland, Daniel Guettler, Misha Pivovarov, Stefan Kramer, Ralph Weissleder posted to semantic classification by druvus on 2009-10-05 10:57:46 as along with 7 people and 2 groups perkeo artaban421 Effie lmichan daforerog cisevol dullhunk NaCTeM BergmanLab
	Automatic document classification of biological literature. [My Copy] BMC bioinformatics, Vol. 7, No. 1. (07 August 2006), 370. by David Chen, Hans-Michael M. Müller, Paul W. Sternberg posted to pubmed gmod classification by druvus on 2009-09-25 15:09:41 as along with 7 people and 3 groups thegoose2 liblab tharris irenas Enro yas ananthrk C. elegans / WormBase dbk-lab T_lab
	PhyloFacts: An online structural phylogenomic encyclopedia for protein functional and structural classification [My Copy] Genome Biology, Vol. 7 (14 September 2006), R83. by Nandini Krishnamurthy, Duncan Brown, Dan Kirshner, Kimmen Sjolander posted to classification phylogeny proteome by druvus on 2009-04-06 10:23:12 as along with 2 people cdallett Tingting
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to classification family proteome by druvus on 2009-03-13 08:49:34 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley treangen carlk cgaugain johanviklund chad_davis camster operon knaseanka indigoviolet skhadar nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
	SIMPRO: simple protein homology detection method by using indirect signals [My Copy] Bioinformatics (22 January 2009), btp048. by Inkyung Jung, Dongsup Kim posted to algorithm classification proteome by druvus on 2009-03-13 08:08:30 as along with 1 person Neeperando
	Comparison study on k-word statistical measures for protein: from sequence to 'sequence space' [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Qi Dai, Tianming Wang posted to classification family proteome by druvus on 2009-03-05 15:39:26 as along with 1 person lptolik
	The MPI Bioinformatics Toolkit for protein sequence analysis. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by A. Biegert, C. Mayer, M. Remmert, J. Söding, A. N. Lupas posted to bioinformatics classification pipeline proteome by druvus on 2009-03-05 15:16:02 as along with 5 people operon daforerog chad_davis moborg grottenolm
	Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity [My Copy] Genome Research, Vol. 15, No. 7. (July 2005), pp. 978-986. by Eric A. Stone, Arend Sidow posted to alignment classification proteome by druvus on 2009-03-04 15:37:18 as along with 1 person jessopher
	Impact of Compounding Error on Strategies for Subtyping Pathogenic Bacteria [My Copy] Foodborne Pathogens and Disease, Vol. 5, No. 4. (2008), pp. 505-516. by Douglas R. Call, Lisa Orfe, Margaret A. Davis, Stacey Lafrentz, Min-Su Kang posted to bacteria classification pathogen review by druvus on 2009-01-30 12:30:04 as
	Protein domain organisation: adding order [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Sarah Kummerfeld, Sarah Teichmann posted to classification domain proteome by druvus on 2009-01-30 08:00:49 as along with 6 people wiedenhoeft martainn gulkur nlapalu kshameer svozil
	New Superfamilies of Eukaryotic DNA Transposons and Their Internal Divisions [My Copy] Mol Biol Evol, Vol. 26, No. 5. (1 May 2009), pp. 983-993. by Weidong Bao, Matthew G. Jurka, Vladimir V. Kapitonov, Jerzy Jurka posted to classification eukaryote transposon by druvus on 2009-01-29 11:25:43 as along with 3 people jlncdr gwallau operon
	The TIGRFAMs database of protein families. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 371-373. by D. H. Haft, J. D. Selengut, O. White posted to classification domain proteome by druvus on 2009-01-21 12:46:55 as along with 3 people Cortel wenhan siebertm
	TIGRFAMs: a protein family resource for the functional identification of proteins. [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 41-43. by D. H. Haft, B. J. Loftus, D. L. Richardson, et al.F. Yang, J. A. Eisen, I. T. Paulsen, O. White posted to classification domain hmm proteome by druvus on 2009-01-21 12:45:02 as along with 2 people ziquje wenhan
	Computational intelligence approaches for pattern discovery in biological systems [My Copy] Brief Bioinform (5 May 2008), bbn021. by Gary B. Fogel posted to bioinformatics classification review by druvus on 2009-01-21 12:02:18 as along with 7 people pablocarb kshameer svozil operon guhjy maximilianh renatomilani
	Data growth and its impact on the SCOP database: new developments. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008) by Antonina Andreeva, Dave Howorth, John-Marc M. Chandonia, et al.Steven E. Brenner, Tim J. Hubbard, Cyrus Chothia, Alexey G. Murzin posted to classification database proteome by druvus on 2009-01-09 13:46:28 as along with 6 people mittinatten bicko timhubbard yuslinaz chad_davis reyez
	An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization [My Copy] Bioinformatics In Bioinformatics, Vol. 23, No. 18. (15 September 2007), pp. 2449-2454. by Ziliang Qian, Lingyi Lu, XiaoJun Liu, Yu-Dong Cai, Yixue Li posted to binding classification predictions tf by druvus on 2008-12-17 13:39:35 as along with 3 people bsamal zwang xili03
	g-MARS: Protein Classification Using Gapped Markov Chains and Support Vector Machines [My Copy] Pattern Recognition in Bioinformatics (2008), pp. 165-177. by Xiaonan Ji, James Bailey, Kotagiri Ramamohanarao posted to classification proteome svm by druvus on 2008-12-17 13:29:33 as
	Recognition of Structure Similarities in Proteins [My Copy] Journal of Systems Science and Complexity, Vol. 21, No. 4. (1 December 2008), pp. 665-675. by Lin Wang, Yuqing Qiu, Jiguang Wang, Xiangsun Zhang posted to classification proteome by druvus on 2008-12-17 13:24:20 as
	Vector space classification of DNA sequences [My Copy] Journal of Theoretical Biology, Vol. 223, No. 2. (21 July 2003), pp. 161-169. by H. Müller posted to classification pca sequence by druvus on 2008-12-17 13:06:15 as
	UPSEC: An Algorithm for Classifying Unaligned Protein Sequences into Functional Families [My Copy] Journal of Computational Biology, Vol. 15, No. 4. (2008), pp. 431-443. by Patrick C. H. Ma, Keith C. C. Chan posted to algorithm classification proteome by druvus on 2008-12-15 13:43:39 as along with 1 person eskay
	Combining classifiers to identify online databases [My Copy] In WWW '07: Proceedings of the 16th international conference on World Wide Web (2007), pp. 431-440. by Luciano Barbosa, Juliana Freire posted to classification database by druvus on 2008-12-11 11:03:42 as along with 2 people fgibson dullhunk
	Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays. [My Copy] BMC Genomics, Vol. 6, No. 1. (2005) by S. N. Gardner, M. C. Wagner posted to classification genome snp software by druvus on 2008-12-10 16:13:55 as along with 1 person guhjy
	Conditional variable importance for random forests [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (11 July 2008), 307. by Carolin Strobl, Anne L. Boulesteix, Thomas Kneib, Thomas Augustin, Achim Zeileis posted to bioinformatics classification statistics by druvus on 2008-12-09 10:16:00 as along with 4 people and 1 group felixandrews jfr guhjy stajich Mycology
	Reconstruction of ancestral protein sequences and its applications [My Copy] BMC Evolutionary Biology, Vol. 4, No. 1. (2004), 33. by Wei Cai, Jimin Pei, Nick Grishin posted to classification proteome by druvus on 2008-12-08 13:24:07 as along with 4 people tomatoe45 dfdong cmzmasek Ema
	Prediction of functional specificity determinants from protein sequences using log-likelihood ratios. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 2. (15 January 2006), pp. 164-171. by J. Pei, W. Cai, L. N. Kinch, N. V. Grishin posted to classification likelihood proteome by druvus on 2008-12-08 13:23:23 as
	De Novo Repeat Classification and Fragment Assembly [My Copy] Genome Research In Genome Research, Vol. 14, No. 9. (September 2004), pp. 1786-1796. by Paul A. Pevzner, Haixu Tang, Glenn Tesler posted to classification repeat by druvus on 2008-12-05 10:18:46 as along with 17 people claire_jubin n00c pachorip natstreet dakelley brl briann operon timflutre azazello prajlondhe nedwards urgi yoanjacquemin dmc Ema Neeperando
	Hierarchical classification of functionally equivalent genes in prokaryotes [My Copy] Nucleic Acids Research, Vol. 35, No. 7. (April 2007), pp. 2125-2140. by Wu, Hongwei, Mao, et al. Fenglou, Olman, Victor, Xu, Ying posted to bacteria classification gene by druvus on 2008-11-20 15:12:35 as along with 1 person treangen
	ROCR: visualizing classifier performance in R. [My Copy] Bioinformatics (11 August 2005) by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted to classification r by druvus on 2008-11-05 11:55:04 as along with 13 people and 4 groups edvin dfdong natstreet BragilMassoud ana barry Ayest lyongu marcius schlauchi gokhan za bertelsen structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Moonlighting proteins. [My Copy] Trends in biochemical sciences, Vol. 24, No. 1. (January 1999), pp. 8-11. by C. J. Jeffery posted to classification proteome by druvus on 2008-11-03 14:14:49 as along with 2 people dullhunk chad_davis
	Functional Classification Using Phylogenomic Inference [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (30 June 2006), e77. by Duncan Brown, Kimmen Sjölander posted to classification phylogeny proteome by druvus on 2008-11-03 08:48:56 as along with 5 people and 2 groups sharpton sgoetz giovenko marcius jhc BioinfoCIPF SGU-CIPF
	CMA - A comprehensive Bioconductor package for supervised classification with high dimensional data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Martin Slawski, Martin Daumer, Anne L. Boulesteix posted to bioconductor classification r by druvus on 2008-10-20 09:30:20 as along with 10 people and 1 group zufar Stew anf jfr akastrin rdiaz nuin guhjy pengchy GeeSharpMinor Bioinformatics - CRUK
	Automatically extracting functionally equivalent proteins from SwissProt [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Lisa Mcmillan, Andrew Martin posted to classification proteome by druvus on 2008-10-09 09:35:18 as along with 4 people and 1 group mitko Keywan stajich renatomilani Mycology
	Predicting protein function from domain content [My Copy] Bioinformatics (30 June 2008), btn312. by Kristoffer Forslund, Erik L. Sonnhammer posted to classification proteome by druvus on 2008-10-06 15:32:53 as along with 5 people phoenixzxl laurenbragg saket zwang reyez
	Protein function prediction and annotation in an integrated environment powered by web services (AFAWE). [My Copy] Bioinformatics (Oxford, England) (12 August 2008) by Anika Jöcker, Fabian Hoffmann, Andreas Groscurth, Heiko Schoof posted to annotation classification proteome by druvus on 2008-10-06 15:21:23 as along with 2 people guhjy dullhunk
	GenMiner: Mining non-redundant association rules from integrated gene expression data and annotations. [My Copy] Bioinformatics (Oxford, England) (17 September 2008) by Ricardo Martinez, Nicolas Pasquier, Claude Pasquier posted to classification proteome software by druvus on 2008-10-06 13:23:22 as along with 5 people Zephyrus jfr sg45653 guhjy barriot
	Functional annotation prediction: All for one and one for all [My Copy] Protein Sci, Vol. 15, No. 6. (1 June 2006), pp. 1557-1562. by Ori Sasson, Noam Kaplan, Michal Linial posted to classification proteome by druvus on 2008-10-06 13:21:50 as along with 1 person tjimenez
	Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000151. by Raja Mazumder, Sona Vasudevan posted to classification proteome review by druvus on 2008-10-03 10:10:22 as along with 9 people and 2 groups i000 pengchy raik chad_davis zwang reyez mdstobbe barry jameswasmuth structural_bioinformatics Bioinformatics
	On the quality of tree-based protein classification. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 9. (1 May 2005), pp. 1876-1890. by B. Lazareva-Ulitsky, K. Diemer, P. D. Thomas posted to classification clustering proteome by druvus on 2008-10-01 15:38:15 as along with 1 person saket
	Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i41-49. by Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial posted to classification clustering proteome by druvus on 2008-10-01 15:37:32 as along with 5 people chad_davis isimpson nklee sconlan nuin
	ProClust: improved clustering of protein sequences with an extended graph-based approach. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 2 (2002) by P. Pipenbacher, A. Schliep, S. Schneckener, A. Schönhuth, D. Schomburg, R. Schrader posted to classification clustering proteome software by druvus on 2008-10-01 15:36:09 as along with 1 person operon
	SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007), S2. by Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Noble, Christina Leslie posted to classification clustering proteome by druvus on 2008-10-01 15:34:24 as along with 2 people yylin kallberg
	Large scale clustering of protein sequences with FORCE -- A layout based heuristic for weighted cluster editing [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Tobias Wittkop, Jan Baumbach, Francisco Lobo, Sven Rahmann posted to classification clustering proteome by druvus on 2008-10-01 14:42:38 as along with 3 people cmzmasek nklee bobychan
	GeneRAGE: a robust algorithm for sequence clustering and domain detection [My Copy] Bioinformatics, Vol. 16, No. 5. (1 May 2000), pp. 451-457. by Anton J. Enright, Christos A. Ouzounis posted to classification proteome by druvus on 2008-10-01 14:37:52 as
	Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 621-628. by Igor V. Tetko, Igor V. Rodchenkov, Mathias C. Walter, Thomas Rattei, Hans-Werner Mewes posted to alignment classification proteome sequence by druvus on 2008-10-01 14:18:03 as along with 6 people kiekyon GustavoLacerda shung guhjy nedwards gongScience
	Spectral clustering of protein sequences. [My Copy] Nucleic acids research, Vol. 34, No. 5. (2006), pp. 1571-1580. by Alberto Paccanaro, James A. Casbon, Mansoor A. Saqi posted to classification proteome by druvus on 2008-10-01 14:15:03 as along with 2 people and 1 group paccanarolab nklee Paccanaro Lab
	Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom posted to classification network tf by druvus on 2008-09-24 12:23:10 as along with 7 people natstreet heliopais dquest kengg bootsy bertelsen guhjy

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genome	412
software	385
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phylogeny	270
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mutation	36
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ortholog	36
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metagenomics	31
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coalescent	29
rice	27
ssr	26
clustering	26
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cis	10
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blog	2
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phy	1
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its	1
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mod	1
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