druvus's mapping [40 articles] Export

Recent papers added to druvus's library classified by the tag mapping. You can also see everyone's mapping.

	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing [My Copy] Bioinformatics (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to next_generation mapping by druvus on 2009-10-28 16:55:00 as along with 4 people darian operon heliopais n00c
	An Integrative Method for Accurate Comparative Genome Mapping [My Copy] PLoS Comput Biol, Vol. 2, No. 8. (4 August 2006), e75. by Firas Swidan, Eduardo P. C. Rocha, Michael Shmoish, Ron Y. Pinter posted to statistics mapping genome by druvus on 2009-10-06 16:10:26 as along with 2 people and 1 group natstreet indigoviolet EisenLab
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to next_generation mapping by druvus on 2009-10-02 08:42:38 as along with 10 people and 1 group djkt n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson stajich neils Mycology
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted to mapping by druvus on 2009-10-01 12:54:32 as along with 37 people and 3 groups azazello rshe dchughes rdowell gwallau aprasad maria_hauser n00c sficklin Thaverkamp cpwardell daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas LabDros BergmanLab EisenLab
	RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2615-2616. by Nicole Cloonan, Qinying Xu, Geoffrey J. Faulkner, et al.Darrin F. Taylor, Dave T. P. Tang, Gabriel Kolle, Sean M. Grimmond posted to next_generation mapping by druvus on 2009-09-28 08:03:44 as along with 14 people and 1 group hzoltan idonaldson cthachuk ethanmj cassj GeeSharpMinor sbmontgomery shyamsg natstreet dswan samgj n00c guhjy GustavoLacerda Journal picks
	Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences [My Copy] Journal of Computational Biology (22 September 2009), 090922085727012. by Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike posted to next_generation mapping by druvus on 2009-09-23 10:58:40 as along with 3 people seb1 justinhjohnson n00c
	Simultaneous alignment of short reads against multiple genomes [My Copy] Genome Biology, Vol. 10, No. 9. (17 September 2009), R98. by Korbinian Schneeberger, Jorg Hagmann, Stephan Ossowski, et al.Norman Warthmann, Sandra Gesing, Oliver Kohlbacher, Detlef Weigel posted to mapping genome by druvus on 2009-09-18 08:58:14 as along with 12 people n00c seninp darian maren megraw djkt fstrozzi jamselem justinhjohnson torfinnnome reyez natstreet
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to next_generation mapping by druvus on 2009-09-11 09:23:59 as along with 19 people and 4 groups cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown dswan polivares orzenil natstreet djkt jmcq n00c heliopais ppgardne Bioinformatics BergmanLab iSEEM Journal picks
	An XML transfer schema for exchange of genomic and genetic mapping data: implementation as a web service in a Taverna workflow [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (14 August 2009), 252. by Trevor Paterson, Andy Law posted to taverna mapping genomic genetic by druvus on 2009-08-17 07:14:37 as along with 7 people and 1 group pekrau dswan FemkeDeBackere guhjy cisevol dullhunk reyez Bioinformatics
	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2514-2521. by Yangho Chen, Tade Souaiaia, Ting Chen posted to solexa next_generation mapping by druvus on 2009-08-13 07:26:16 as along with 10 people and 1 group Julien_Fayolle heliopais darian dswan operon fishtank polivares n00c torfinnnome natstreet BergmanLab
	Every genome sequence needs a good map [My Copy] Genome Research, Vol. 19, No. 11. (13 November 2009), pp. 1925-1928. by Harris A. Lewin, Denis M. Larkin, Joan Pontius, Stephen J. O'Brien posted to genome mapping by druvus on 2009-07-14 14:22:58 as along with 4 people davidmam neils jasontsai natstreet
	RazerS--fast read mapping with sensitivity control. [My Copy] Genome research, Vol. 19, No. 9. (10 September 2009), pp. 1646-1654. by David Weese, Anne-Katrin K. Emde, Tobias Rausch, Andreas Döring, Knut Reinert posted to genome mapping next_generation by druvus on 2009-07-14 14:22:41 as along with 6 people and 1 group torfinnnome heliopais jandot n00c reyez natstreet Journal picks
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to mapping next_generation by druvus on 2009-06-08 07:52:19 as along with 26 people and 6 groups hzoltan agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	ABACAS: algorithm-based automatic contiguation of assembled sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1968-1969. by Samuel Assefa, Thomas M. Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman posted to mapping sequence by druvus on 2009-06-08 07:51:14 as along with 7 people and 1 group sconlan GustavoLacerda adamjamesreid jmeppley sandfire pengchy AlexBateman Journal picks
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to mapping next_generation by druvus on 2009-05-27 11:32:24 as along with 22 people and 4 groups heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr Stew farhat humburg kshameer operon stajich GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	Fast and accurate short read alignment with Burrows-Wheeler transform [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to mapping next_generation by druvus on 2009-05-19 07:56:53 as along with 34 people and 4 groups agbiotec lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1424-1425. by You Jung Kim, Nikhil Teletia, Victor Ruotti, et al.Christopher A. Maher, Arul M. Chinnaiyan, Ron Stewart, James A. Thomson, Jignesh M. Patel posted to alignment mapping next_generation by druvus on 2009-05-05 15:26:53 as along with 13 people and 2 groups Julien_Fayolle jfr mmartin n00c guhjy nuin idonaldson AlexBateman bmajoros humburg Thaverkamp svenrahmann djkt Bioinformatics Journal picks
	Profiling model T cell metagenomes with short reads [My Copy] Bioinformatics (9 January 2009), btp010. by Rene L. Warren, Brad H. Nelson, Robert A. Holt posted to assembly mapping next_generation by druvus on 2009-04-15 08:42:59 as along with 2 people jonilaserson rschulz
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted to assembly mapping next_generation by druvus on 2009-04-15 08:42:30 as along with 19 people and 2 groups jfr azazello hzoltan cthachuk GustavoLacerda jasontsai n00c nuin dakelley skembel Thaverkamp reyez TRHvidsten djkt hpaces APRegier pengchy natstreet darian iSEEM Bioinformatics
	Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. [My Copy] Nature methods, Vol. 6, No. 4. (15 April 2009), pp. 291-295. by Iwanka Kozarewa, Zemin Ning, Michael A. Quail, Mandy J. Sanders, Matthew Berriman, Daniel J. Turner posted to assembly illumina mapping next_generation by druvus on 2009-04-14 13:47:34 as along with 6 people mkiyer guhjy inesdesantiago natstreet athma jbhiatt
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to cloud mapping next_generation by druvus on 2009-04-09 09:08:00 as along with 33 people and 2 groups joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando neils KCL & UCL Bioinformatics Bioinformatics
	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to assembly genome mapping sequencing by druvus on 2009-02-23 09:51:32 as along with 12 people and 1 group GustavoLacerda darshan n00c natstreet lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Ema Neeperando SIMR bioinformatics
	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to assembly genome mapping next_generation sequencing by druvus on 2009-02-23 09:48:51 as along with 17 people hzoltan bozdagd fishtank burak ThomasDOtto n00c mmartin natstreet adijr felsani xingxu azazello orzenil dswan pengchy cthachuk nuin
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to assembly mapping next_generation sequencing by druvus on 2009-02-23 09:47:26 as along with 38 people and 2 groups seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted to mapping next_generation software by druvus on 2009-02-23 09:24:08 as along with 20 people and 1 group Julien_Fayolle cthachuk hzoltan seb1 bozdagd adijr heliopais darian maren n00c nuin skembel cassj Neeperando helminth_lab rschulz guhjy natstreet renatomilani WanderingAengus iSEEM
	MOM: maximum oligonucleotide mapping [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 969-970. by Hugh L. Eaves, Yuan Gao posted to 454 algorithm mapping by druvus on 2009-02-23 09:03:37 as along with 9 people Julien_Fayolle heliopais seb1 jfr n00c cassj rschulz mmartin guhjy
	A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers [My Copy] BMC Plant Biology, Vol. 9, No. 1. (2009) by Emma Mace, Jean F. Rami, Sophie Bouchet, et al.Patricia Klein, Robert Klein, Andrzej Kilian, Peter Wenzl, Ling Xia, Kirsten Halloran, David Jordan posted to genetic mapping markers by druvus on 2009-01-27 09:48:41 as
	Conversion of MapMan to Allow the Analysis of Transcript Data from Solanaceous Species: Effects of Genetic and Environmental Alterations in Energy Metabolism in the Leaf [My Copy] Plant Molecular Biology, Vol. 60, No. 5. (March 2006), pp. 773-792. by Ewa Urbanczyk-Wochniak, Bjorn Usadel, Oliver Thimm, et al.Adriano Nunes-Nesi, Fernando Carrari, Marcus Davy, Oliver Blasing, Magdalena Kowalczyk, Daniel Weicht, Anna Polinceusz, Svenja Meyer, Mark Stitt, Alisdair Fernie posted to mapman mapping proteome by druvus on 2009-01-19 13:54:59 as
	Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses [My Copy] BMC Genomics, Vol. 3, No. 1. (2002) by Olga Zhaxybayeva, Peter J. Gogarten posted to bayesian comperative_genomics likelihood mapping by druvus on 2008-12-18 21:53:04 as along with 1 person saraballouz
	High-resolution statistical mapping reveals gene territories in live yeast [My Copy] Nat Meth, Vol. 5, No. 12. (December 2008), pp. 1031-1037. by Axel B. Berger, Ghislain G. Cabal, Emmanuelle Fabre, et al.Tarn Duong, Henri Buc, Ulf Nehrbass, Jean-Christophe Olivo-Marin, Olivier Gadal, Christophe Zimmer posted to genome mapping by druvus on 2008-11-28 12:02:32 as along with 4 people and 1 group singhsh Annab stajich lp2 Mycology
	SSAHA: a fast search method for large DNA databases. [My Copy] Genome research, Vol. 11, No. 10. (1 October 2001), pp. 1725-1729. by Z. Ning, A. J. Cox, J. C. Mullikin posted to mapping software by druvus on 2008-11-27 16:44:59 as along with 17 people torfinnnome stharward adthrasher mattwa jmanning2k n00c jmcq APRegier natstreet treangen umit mmartin timflutre bpb j3xucite lp2 dmc
	Comparison of methods for genomic localization of gene trap sequences [My Copy] BMC Genomics, Vol. 7 (18 September 2006), 236. by Courtney A. Harper, Conrad C. Huang, Doug Stryke, Michiko Kawamoto, Thomas E. Ferrin, Patricia C. Babbitt posted to mapping software by druvus on 2008-11-27 16:42:50 as
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to 454 genome mapping by druvus on 2008-11-27 16:21:43 as along with 26 people cthachuk hzoltan antonkratz adijr jmanning2k pachorip jmcq jsatkosk jasontsai n00c hpaces skembel maren natstreet orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd waszak
	xMAN: extreme MApping of OligoNucleotides [My Copy] BMC Genomics, Vol. 9, No. Suppl 1. (2008) by Wei Li, Jason Carroll, Myles Brown, Shirley X. Liu posted to 454 genome mapping by druvus on 2008-11-27 16:20:00 as along with 4 people guhjy natstreet umit waszak
	SeqMap: mapping massive amount of oligonucleotides to the genome [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2395-2396. by Hui Jiang, Wing H. Wong posted to 454 genome mapping by druvus on 2008-11-27 16:16:33 as along with 12 people Julien_Fayolle n00c cassj yupu natstreet caseybrown guhjy nuin Zigster pengchy cthachuk waszak
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew Smith, Zhenyu Xuan, Michael Zhang posted to 454 mapping sequencing statistics by druvus on 2008-11-19 11:51:42 as along with 18 people hzoltan seb1 heliopais bozdagd katholt inesdesantiago n00c maren floatingpoint lukaswindhager natstreet jfr pengchy farhat ghattem mdimon kmdaily caseybrown
	Homology search for genes [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i97-103. by Xuefeng Cui, Tomas Vinar, Brona Brejova, Dennis Shasha, Ming Li posted to algorithm blast gene homology mapping software by druvus on 2008-11-17 09:28:55 as along with 3 people rshe guhjy GustavoLacerda
	Automated generation of heuristics for biological sequence comparison [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 31. by Guy Slater, Ewan Birney posted to alignment genome mapping by druvus on 2008-11-04 12:49:34 as along with 12 people and 1 group n00c rshe darian mhamada orzenil jmcq waszak indigoviolet massivemayhem wenhan hpaces marti EisenLab
	GMAP: a genomic mapping and alignment program for mRNA and EST sequences [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1859-1875. by Thomas D. Wu, Colin K. Watanabe posted to alignment est genome mapping sequence by druvus on 2008-11-04 12:29:53 as along with 5 people maren bozdagd natstreet olympos yoanjacquemin
	ZOOM! Zillions of oligos mapped [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2431-2437. by Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li posted to 454 genome mapping software by druvus on 2008-10-27 08:53:40 as along with 20 people hzoltan gbenson bozdagd adijr gdb n00c GeeSharpMinor inesdesantiago GustavoLacerda cthachuk guhjy abizar APRegier natstreet caseybrown djkt wisdom_love umit Neeperando Stew

Note: You may cite this page as: http://www.citeulike.org/user/druvus/tag/mapping

genome	396
software	380
evolution	282
phylogeny	270
statistics	221
review	211
bacteria	189
database	179
francisella	165
proteome	160
next_generation	158
repeat	158
plant	142
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tf	84
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populus	81
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snp	58
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r	52
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synthetic_biology	39
indel	37
ecoli	36
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distance	35
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454	34
ontology	34
likelihood	33
taverna	33
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references	30
wiki	30
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rice	27
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simulation	25
browser	25
ssr	25
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selection	21
domain	21
tom	21
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stress	18
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book	15
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comment	14
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ricinus	12
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solexa	12
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mvla	11
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cis	10
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parallel	10
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qtl	8
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drupal	3
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splicing	3
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mesh	3
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php	3
chip-seq	3
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pca	3
kernel	2
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mouse	2
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gsea	2
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schu	2
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mutant	2
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correlation	2
rnai	2
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blog	2
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chado	2
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kegg	2
fungi	2
barley	2
photosynthesis	2
piscirickettsia	2
biomass	2
genomic	2
perl	2
holartica	2
indexing	2
ontologies	2
mutual_information	2
lab_book	2
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timeserie	2
regulon	2
education	2
cloning	2
venn	2
community_intelligence	2
mapman	2
migration	2
gene_ontology	2
psbs	1
provenance	1
genomis	1
mosquito	1
geneticics	1
brucella	1
integration	1
scientometrics	1
cod	1
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wolbachia	1
protease	1
phy	1
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mir-396	1
fuzzy	1
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peptide	1
ft_ir	1
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seldi	1
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apple	1
ruby	1
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mod	1
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mcl	1
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its	1
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gwa	1
intron	1
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i	1
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c	1
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ribosome	1
distane	1
methods	1
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mutation_rate	1
gramene	1
knowledge_management	1
proteat	1
horizontal_gene_transfer	1
moby	1
impact	1
benchmark	1
modules	1
alias	1
bisulphite	1
sql	1
snv	1
cassava	1
alfresco	1
malaria	1
pfam	1
co2	1
wheat	1
condor	1
orthology	1
coding	1
pine	1
statistic	1
refseq	1
funding	1
dart	1
anthocyanin	1
pce	1
soap	1
matlab	1
gbrowse	1
real_time_pcr	1
caps	1
convert	1
intermine	1
biosecurity	1
methylation	1
mrna	1
agents	1
humal	1
mediawiki	1
artifacts	1
tantem	1
validation	1
visualsisation	1
wgcna	1

druvus's mapping [40 articles] Export

druvus's tags