druvus's network [104 articles] Export

Recent papers added to druvus's library classified by the tag network. You can also see everyone's network.

	Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 22. (15 November 2009), pp. 3001-3004. by Feng Tian, Parantu K. Shah, Xiangjun Liu, et al.Nicolas Negre, Jia Chen, Oleksiy Karpenko, Kevin P. White, Robert L. Grossman posted to network genome database by druvus on 2009-11-04 15:30:36 as along with 2 people guhjy isimpson
	Stratification of co-evolving genomic groups using ranked phylogenetic profiles [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 355. by Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos Ouzounis posted to phylogeny network co-regulated by druvus on 2009-10-28 16:54:07 as along with 2 people and 1 group CLH_1865 stajich Mycology
	Arabidopsis gene co-expression network and its functional modules [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 346. by Linyong Mao, John Van Hemert, Sudhansu Dash, Julie Dickerson posted to network module arabidopsis by druvus on 2009-10-21 16:19:12 as along with 3 people dolchan venancio Borelli
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted to software network coexpression by druvus on 2009-10-15 11:14:34 as along with 5 people and 1 group sillitoe rcr1991 trogdor rdiaz torfinnnome Orengo Group Journal Picks
	Phylogenetic analysis of modularity in protein interaction networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (14 October 2009), 333. by Sinan Erten, Xin Li, Gurkan Bebek, Jing Li, Mehmet Koyutürk posted to proteome phylogeny network module by druvus on 2009-10-15 11:14:14 as along with 7 people and 2 groups sillitoe biomcgary ppgardne grahamc zwang barriot phoenixzxl Orengo Group Journal Picks Journal picks
	How to visually interpret biological data using networks [My Copy] Nature Biotechnology, Vol. 27, No. 10. (01 October 2009), pp. 921-924. by Daniele Merico, David Gfeller, Gary D. Bader posted to visualsisation network by druvus on 2009-10-13 11:42:32 as along with 13 people and 1 group Geknitics perkeo qayub mhamidi OliverHarriman AJCann grahamc rdiaz megraw tmmurali fgibson gotgenes dullhunk Journal picks
	How to identify essential genes from molecular networks? [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 102. by Gabriel D. Rio, Dirk Koschutzki, Gerardo Coello posted to network module gene by druvus on 2009-10-13 09:15:41 as along with 7 people operon tmmurali kshameer phoenixzxl ptrobajo renatomilani daforerog
	VANLO - Interactive visual exploration of aligned biological networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (12 October 2009), 327. by Steffen Brasch, Lars Linsen, Georg Fuellen posted to visualisation network by druvus on 2009-10-12 16:40:40 as along with 1 person grahamc
	Functionally guided alignment of protein interaction networks for module detection [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3166-3173. by Waqar Ali, Charlotte M. Deane posted to proteome network alignment by druvus on 2009-10-02 08:47:11 as along with 1 person grahamc
	Characterization of WRKY co-regulatory networks in rice and Arabidopsis [My Copy] BMC Plant Biology, Vol. 9, No. 1. (2009), 120. by Stefano Berri, Pamela Abbruscato, Odile F. Rampant, et al.Ana Brasileiro, Irene Fumasoni, Kouji Satoh, Shoshi Kikuchi, Luca Mizzi, Piero Morandini, Mario Pe, Pietro Piffanelli posted to tf rice plant network arabidopsis by druvus on 2009-09-23 10:57:45 as along with 1 person natstreet
	From gene expression to gene regulatory networks in Arabidopsis thaliana [My Copy] BMC Systems Biology, Vol. 3, No. 1. (3 September 2009), 85. by Chris Needham, Iain Manfield, Andrew Bulpitt, Philip Gilmartin, David Westhead posted to network gene expression bayesian arabidopsis by druvus on 2009-09-03 15:00:37 as along with 9 people idonaldson pengchy Borelli ptrobajo danmaclean TRHvidsten rmk barriot natstreet
	Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 405. by Christiaan Saris, Steve Horvath, Paul van Vught, et al.Michael van Es, Hylke Blauw, Tova Fuller, Peter Langfelder, Joseph DeYoung, John Wokke, Jan Veldink, Leonard van den Berg, Roel Ophoff posted to wgcna network by druvus on 2009-08-28 08:31:57 as along with 1 person giovanni
	Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2962-2968. by Hisashi Kashima, Yoshihiro Yamanishi, Tsuyoshi Kato, Masashi Sugiyama, Koji Tsuda posted to transcription network genome evolution by druvus on 2009-08-19 09:33:04 as along with 3 people and 1 group jperkins roys phoenixzxl Orengo Group Journal Picks
	MouseCyc: a curated biochemical pathways database for the laboratory mouse [My Copy] Genome Biology, Vol. 10, No. 8. (14 August 2009), R84. by Alexei Evsikov, Mary Dolan, Michael Genrich, Emily Patek, Carol Bult posted to network metabolomics by druvus on 2009-08-17 07:19:35 as along with 2 people megraw ptrobajo
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to network systems_biology visualisation by druvus on 2009-08-10 14:53:45 as along with 38 people and 3 groups singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Network Module Detection: Affinity Search Technique with the Multi-Node Topological Overlap Measure [My Copy] BMC Research Notes, Vol. 2, No. 1. (2009), 142. by Ai Li, Steve Horvath posted to network tom by druvus on 2009-08-06 11:51:09 as
	Revisiting the Foundations of Network Analysis [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 414-416. by Carter T. Butts posted to network review by druvus on 2009-07-28 09:07:39 as along with 13 people eegilbert normaali rdiaz adriandefroment matteodellamico guhjy ddahlem aidankeane Borelli apocapoc tnhh dswan daforerog
	Scale-Free Networks: A Decade and Beyond [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 412-413. by Albert-Laszlo Barabasi posted to network review by druvus on 2009-07-27 08:01:35 as along with 27 people and 2 groups danilov jaspervoskuilen welliegirl Sergey_gerbek guhjy echi sld65 ddahlem normaali thegoose rdiaz matteodellamico cjryan aidankeane melo_mcr sergiun compbio harrykipper reyez ganden Borelli apocapoc dullhunk dswan daforerog tnhh pick600 complex networks LABSS
	The protein network of bacterial motility [My Copy] Mol Syst Biol, Vol. 3 (31 July 2007) by Seesandra V. Rajagopala, Bjorn Titz, Johannes Goll, et al.Jodi R. Parrish, Katrin Wohlbold, Matthew T. Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L. Finley, Peter Uetz posted to bacteria network proteome by druvus on 2009-07-21 10:03:17 as along with 7 people and 3 groups aswin grahamc jmrivort zwang Pao-Yang carlk cerca G-quadruplex Supramolecular OPIG
	Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 327. by Mike Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath posted to coexpression network transcription by druvus on 2009-07-21 08:47:14 as
	RiceArrayNet: A database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice [My Copy] Plant Physiol. (15 July 2009), pp.109.139030. by Tae-Ho Lee, Yeon-Ki Kim, Thu T. Pham, et al.Sang I. Song, Ju-Kon Kim, Kyu Y. Kang, Gynheung An, Ki-Hong Jung, David W. Galbraith, Minkyun Kim, Ung-Han Yoon, Baek H. Nahm posted to database network rice by druvus on 2009-07-16 09:11:34 as along with 1 person natstreet
	A complex-centric view of protein network evolution. [My Copy] Nucleic acids research, Vol. 37, No. 12. (1 July 2009), e88. by Nir Yosef, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to evolution network proteome by druvus on 2009-07-15 08:50:05 as along with 11 people and 1 group carlk chica saket dakelley tomhebbron davidalee leemond31 kiekyon neils tmmurali grahamc Orengo Group Journal Picks
	Metabolic-network-driven analysis of bacterial ecological strategies [My Copy] Genome Biology, Vol. 10, No. 6. (05 June 2009), R61. by Shiri Freilich, Anat Kreimer, Elhanan Borenstein, et al.Nir Yosef, Roded Sharan, Uri Gophna, Eytan Ruppin posted to bacteria metabolomics network by druvus on 2009-06-08 07:50:29 as along with 7 people and 2 groups bovee michaelbarton seamudbug Winzer tomhebbron Thaverkamp jlgreen Microbial-Ecology iSEEM
	Analyzing miRNA co-expression networks to explore TF-miRNA regulation. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 163. by Sanghamitra Bandyopadhyay, Malay Bhattacharyya posted to co-regulated mirna network tf by druvus on 2009-05-28 13:35:18 as along with 9 people and 1 group guhjy imina daforerog TRHvidsten SaraNasser natstreet lwaldron erel10 ealloza Bioinformatics
	State of the nation in data integration for bioinformatics [My Copy] Journal of Biomedical Informatics, Vol. 41, No. 5. (5 October 2008), pp. 687-693. by C. Goble, R. Stevens posted to network semantic web_20 by druvus on 2009-04-02 09:51:15 as along with 11 people pmendes mtaschuk simonmcbride agbiotec fgibson guhjy dullhunk cjhall alanrw winterschlaefer dansullivanblk
	Drug discovery in the era of facebook-new tools for scientific networking. [My Copy] Drug discovery today (1 August 2008) by David S S. Bailey, Edward D D. Zanders posted to network semantic web_20 by druvus on 2009-04-02 09:44:30 as along with 6 people tbinbal jfr Yanno jjcain00 dullhunk guhjy
	BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 6. (15 March 2008), pp. 876-877. by A. Zinovyev, E. Viara, L. Calzone, E. Barillot posted to cytoscape network visualisation by druvus on 2009-03-27 09:09:25 as along with 7 people daforerog guhjy jfr dullhunk grahamc sgoetz idonaldson
	DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2117-2118. by Bing Xiong, Ke Liu, Jie Wu, David L. Burk, Hualiang Jiang, Jingkang Shen posted to cytoscape molecular network visualisation by druvus on 2009-03-27 09:08:44 as along with 5 people Yanno operon guhjy zimbo1 reyez
	Identifying coevolving partners from paralogous gene families. [My Copy] Evolutionary bioinformatics online, Vol. 4 (2008), pp. 97-107. by C. H. Yeang posted to evolution family network proteome by druvus on 2009-03-24 07:42:40 as
	Coevolutionary networks of splicing cis-regulatory elements [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18583-18588. by Xinshu Xiao, Zefeng Wang, Minyoung Jang, Christopher B. Burge posted to cis network splicing by druvus on 2009-03-23 08:40:44 as along with 4 people dfdong cjeans oelemento roys
	Network Discovery Pipeline Elucidates Conserved Time-of-Day-Specific cis-Regulatory Modules. [My Copy] PLoS Genet, Vol. 4, No. 2. (1 February 2008) by Todd P P. Michael, Todd C C. Mockler, Ghislain Breton, et al.Connor McEntee, Amanda Byer, Jonathan D D. Trout, Samuel P P. Hazen, Rongkun Shen, Henry D D. Priest, Christopher M M. Sullivan, Scott A A. Givan, Marcelo Yanovsky, Fangxin Hong, Steve A A. Kay, Joanne Chory posted to cis module network by druvus on 2009-03-17 09:14:16 as along with 2 people lptolik natstreet
	Choose your partners: dimerization in eukaryotic transcription factors. [My Copy] Trends in biochemical sciences, Vol. 33, No. 5. (May 2008), pp. 220-229. by Grigoris D. Amoutzias, David L. Robertson, Yves Van de Peer, Stephen G. Oliver posted to eukaryote network tf by druvus on 2009-03-04 09:36:12 as along with 1 person guhjy
	Module networks revisited: computational assessment and prioritization of model predictions [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 490-496. by Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel posted to module network predictions by druvus on 2009-02-18 09:22:15 as along with 12 people ptrobajo TRHvidsten jfr guhjy tvdbulck mhamada roys zufar rdiaz verdicchio imina dolchan
	Structure and evolution of gene regulatory networks in microbial genomes. [My Copy] Research in microbiology, Vol. 158, No. 10. (December 2007), pp. 787-794. by S. C. Janga, J. Collado-Vides posted to bacteria genomics network tf by druvus on 2009-01-26 08:55:39 as along with 1 person and 1 group gcarbajosa TNT
	The evolution of hierarchical gene regulatory networks [My Copy] Nat Rev Genet, Vol. 10, No. 2. (February 2009), pp. 141-148. by Douglas H. Erwin, Eric H. Davidson posted to co-regulated evolution network by druvus on 2009-01-22 10:15:49 as along with 10 people PabloMarin Scis0000002 erel10 ynaito dakelley wangbo natstreet balicea Borelli balabu
	Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells [My Copy] BMC Bioinformatics, Vol. 9 (29 September 2008), 404. by Atsushi Niida, Andrew D. Smith, Seiya Imoto, et al.Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama posted to microarray network statistics by druvus on 2009-01-15 09:15:21 as along with 5 people Zephyrus Borelli jfr xili03 pengchy
	Ranked prediction of p53 targets using hidden variable dynamic modeling [My Copy] Genome Biology, Vol. 7, No. 3. (2006) by Martino Barenco, Daniela Tomescu, Daniel Brewer, Robin Callard, Jaroslav Stark, Michael Hubank posted to binding gene network predictions tf by druvus on 2009-01-12 14:08:03 as along with 1 person johncumbers
	Why Is the Correlation between Gene Importance and Gene Evolutionary Rate So Weak? [My Copy] PLoS Genet, Vol. 5, No. 1. (January 2009), e1000329. by Zhi Wang, Jianzhi Zhang posted to evolution gene network by druvus on 2009-01-12 08:18:07 as along with 11 people and 2 groups daveGerrard rdiaz renatomilani michaelbarton dpollard pkonings katholt Zephyrus djkt trfield cabbagesofdoom RockmanLab R.E.A.D
	Reconstruction of biochemical networks in microorganisms. [My Copy] Nature reviews. Microbiology (31 December 2008) by Adam M. Feist, Markus J. Herrgård, Ines Thiele, Jennie L. Reed, Bernhard O. Palsson posted to bacteria network by druvus on 2009-01-09 12:15:11 as along with 10 people and 1 group coela roys rdiaz mycomodel tobitas pinney michaelbarton friveroll behindtherabbit dullhunk Bioinformatics
	Align human interactome with phenome to identify causative genes and networks underlying disease families. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 1. (1 January 2009), pp. 98-104. by Xuebing Wu, Qifang Liu, Rui Jiang posted to coexpression gene network by druvus on 2009-01-09 11:47:11 as along with 5 people daforerog jfr saket guhjy grahamc
	WGCNA: an R package for weighted correlation network analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Peter Langfelder, Steve Horvath posted to coexpression network r software by druvus on 2009-01-09 11:40:31 as along with 15 people and 2 groups jeremymiller daforerog sficklin lwaldron jfr ekotelnikova slv23 rdiaz guhjy natstreet cswinburne lptolik jmeppley irinamohorianu pengchy Bioinformatics Bioinformatics - CRUK
	Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Matteo Brilli, Alessio Mengoni, Marco Fondi, Marco Bazzicalupo, Pietro Lio, Renato Fani posted to blast network phylogeny visualisation by druvus on 2008-12-21 20:50:08 as along with 2 people nuin taguchi
	CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks [My Copy] BMC Bioinformatics, Vol. 8 (06 November 2007), 429. by Jan Baumbach posted to database network by druvus on 2008-12-18 10:59:01 as
	Linking Cytoscape and the corynebacterial reference database CoryneRegNet [My Copy] BMC Genomics, Vol. 9 (21 April 2008), 184. by Jan Baumbach, Leonard Apeltsin posted to bacteria cytoscape database network by druvus on 2008-12-18 10:58:09 as
	Microbial regulatory and metabolic networks. [My Copy] Curr Opin Biotechnol, Vol. 18, No. 4. (August 2007), pp. 360-364. by B. K. Cho, P. Charusanti, M. J. Herrgård, B. Palsson posted to bacteria network by druvus on 2008-12-18 10:57:21 as along with 1 person fishtank
	Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks [My Copy] Brief Bioinform, Vol. 10, No. 1. (1 January 2009), pp. 75-83. by Jan Baumbach, Andreas Tauch, Sven Rahmann posted to bacteria network visualisation by druvus on 2008-12-18 10:55:49 as along with 2 people antonkratz dullhunk
	Reverse engineering the genotype\|[ndash]\|phenotype map with natural genetic variation [My Copy] Nature, Vol. 456, No. 7223. (10 December 2008), pp. 738-744. by Matthew V. Rockman posted to genetic network by druvus on 2008-12-17 10:01:55 as along with 15 people and 1 group gdb carlk Keywan TRHvidsten jfr roys Zephyrus mjoach sg45653 natstreet sriesenfeld lp2 pkonings stringertheory djkt Roswell Cancer Crosstalk
	Extended Newick: it is time for a standard representation of phylogenetic networks [My Copy] BMC Bioinformatics, Vol. 9 (15 December 2008), 532. by Gabriel, Gabriel Valiente posted to alignment network phylogeny by druvus on 2008-12-17 07:46:51 as along with 4 people nuin tny jmeppley barriot
	Visualization, documentation, analysis, and communication of large-scale gene regulatory networks. [My Copy] Biochimica et biophysica acta, Vol. 1789, No. 4. (6 April 2009), pp. 363-374. by W. J. Longabaugh, E. H. Davidson, H. Bolouri posted to co-regulated microarray network visualisation by druvus on 2008-12-09 10:18:08 as along with 2 people jfr guhjy
	A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility. [My Copy] Genome research, Vol. 18, No. 5. (17 May 2008), pp. 706-716. by Mark P. Keller, YounJeong Choi, Ping Wang, et al.Dawn Belt B. Davis, Mary E. Rabaglia, Angie T. Oler, Donald S. Stapleton, Carmen Argmann, Kathy L. Schueler, Steve Edwards, H. Adam Steinberg, Elias Chaibub Neto, Robert Kleinhanz, Scott Turner, Marc K. Hellerstein, Eric E. Schadt, Brian S. Yandell, Christina Kendziorski, Alan D. Attie posted to network tom by druvus on 2008-12-05 09:52:01 as along with 4 people ptrobajo brianb frohike caseybrown

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genome	395
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fdr	1
ft_ir	1
funding	1
future_plans	1
fuzzy	1
gbrowse	1
genes	1
geneticics	1
genomis	1
gis	1
gmo	1
gpu	1
gramene	1
gwa	1
horizontal_gene_transfer	1
humal	1
human_genome	1
i	1
impact	1
imputation	1
integration	1
intermine	1
intron	1
iron_limitation	1
isolation	1
its	1
java	1
knowledge_management	1
linear_models	1
lrt	1
malaria	1
matlab	1
mcl	1
mediawiki	1
membrane	1
metal	1
methods	1
methylation	1
microbial_communities	1
microscope	1
mir-396	1
moby	1
mod	1
modules	1
mosquito	1
mosquitoes	1
mrna	1
mutation_rate	1
novicida	1
nucleotide	1
oligo	1
opls	1
orthology	1
parser	1
pce	1
peptide	1
pfam	1
phy	1
pine	1
pinus	1
probabilistic	1
protease	1
proteat	1
proteom	1
provenance	1
psbs	1
pseudomonas	1
real_time_pcr	1
refseq	1
rflp	1
ribosome	1
rosids	1
rrecombination	1
ruby	1
scientometrics	1
script	1
seldi	1
senescence	1
sequenceing	1
snv	1
soap	1
sql	1
statistic	1
sunflower	1
symfony	1
tantem	1
ticks	1
transfac	1
transposition	1
tularensis	1
vaccine	1
validation	1
viewer	1
visualsisation	1
wgcna	1
wheat	1
wolbachia	1

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