druvus's r [52 articles] Export

Recent papers added to druvus's library classified by the tag r. You can also see everyone's r.

	edgeR: a Bioconductor package for differential expression analysis of digital gene expression data [My Copy] Bioinformatics (11 November 2009), btp616. by Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth posted to r expression bioconductor by druvus on 2009-11-13 14:00:00 as along with 2 people heliopais hzoltan
	DEGseq: an R package for identifying differentially expressed genes from RNA-seq data [My Copy] Bioinformatics In Bioinformatics (24 October 2009), btp612. by Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang posted to rna-seq r next_generation by druvus on 2009-10-26 07:45:00 as along with 10 people jwfoley sotacam torfinnnome hzoltan ramonvidal jmeppley heliopais GeeSharpMinor juokcho natstreet
	The gputools package enables GPU computing in R. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp608. by Joshua Buckner, Justin Wilson, Mark Seligman, Brian Athey, Stanley Watson, Fan Meng posted to r parallel gpu by druvus on 2009-10-23 08:45:26 as along with 6 people nuin operon hughitt1 BlackPhoenix shigepong neils
	HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 24. (15 December 2009), pp. 3325-3326. by Heidi Dvinge, Paul Bertone posted to r pcr by druvus on 2009-10-07 08:17:25 as along with 5 people guhjy Vincent_Rouilly torfinnnome GeeSharpMinor natstreet
	A Quick Guide to Teaching R Programming to Computational Biology Students [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000482. by Stephen J. Eglen posted to teaching r by druvus on 2009-08-28 08:29:46 as along with 64 people and 4 groups idonaldson bsamal nuin kaliczp maren sobolevnrm ltitodem zchen75 artaban421 natstreet jasonn tomhebbron psique Stew eshirdel guhjy polivares ajw fishtank diamantis fastjoe23 kshameer daveGerrard hrogers JoeBanks cisevol srijit hwright Ayest VGreiff welliegirl asadrahman rdiaz ptrobajo heliopais coffeerv Vincent_Rouilly marekrud tnhh barry ansobol Zephyrus walshtp bertelsen fgibson pkonings Borelli klauso dlizcano dswan skembel djkt jclau lwaldron phoenixzxl timhubbard AJCann thegoose dullhunk brianb neils silberbauer daforerog ppgardne Bioinformatics - CRUK BergmanLab eLearning in Leicester Journal picks
	integrOmics: an R package to unravel relationships between two omics datasets [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2855-2856. by Kim-Anh Le Cao, Ignacio Gonzalez, Sebastien Dejean posted to r genomics comperative_genomics by druvus on 2009-08-26 08:35:49 as along with 17 people and 1 group molnet-mna jperkins tonamswish dswan mayercd operon kshameer heliopais dolchan nuin ptrobajo sebastien_vigneau rdiaz cassj brianb neils natstreet Orengo Group Journal Picks
	ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2607-2608. by Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Herve Pages, Robert Gentleman posted to bioconductor next_generation r by druvus on 2009-08-05 08:23:39 as along with 14 people and 1 group manduca darian jforment fstrozzi rschulz djkt jmeppley dswan torfinnnome walshtp jamesmorris joaocarrico natstreet n00c Bioinformatics Core Service
	State of the Art in Parallel Computing with R [My Copy] Journal of Statistical Software, Vol. 31, No. 1. (June 2009), pp. 1-27. by Markus Schmidberger, Martin Morgan, Dirk Eddelbuettel, Hao Yu, Luke Tierney, Ulrich Mansmann posted to parallel r review by druvus on 2009-08-05 07:42:02 as
	Using R in Taverna: RShell v1.2 [My Copy] BMC Research Notes, Vol. 2, No. 1. (16 July 2009), 138. by Ingo Wassink, Han Rauwerda, Pieter Neerincx, et al.Paul E. Vet, Timo Breit, Jack Leunissen, Anton Nijholt posted to r taverna wms by druvus on 2009-07-22 12:51:21 as along with 7 people Yanno isimpson guhjy Thaverkamp daforerog natstreet dullhunk
	rtracklayer: an R package for interfacing with genome browsers. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1841-1842. by Michael Lawrence, Robert Gentleman, Vincent Carey posted to browser genome gmod r by druvus on 2009-05-26 07:39:32 as along with 17 people and 3 groups jfr daveGerrard iris42 guhjy aprasad dswan cisevol shikin inesdesantiago daforerog ppgardne natstreet nuin brianb kshameer neils chrisamiller Bioinformatics BergmanLab Journal picks
	Relative expression software tool (REST(C)) for group-wise comparison and statistical analysis of relative expression results in real-time PCR [My Copy] Nucl. Acids Res., Vol. 30, No. 9. (1 May 2002), e36. by Michael W. Pfaffl, Graham W. Horgan, Leo Dempfle posted to pcr r software by druvus on 2009-04-20 08:20:43 as along with 7 people Annab GeeSharpMinor shikin sebastien_vigneau lisa1 endo_anaphy2 bakakaj
	Data-driven normalization strategies for high-throughput quantitative RT-PCR. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (19 April 2009), 110. by Jessica C. Mar, Yasumasa Kimura, Kate Schroder, et al.Katharine M. Irvine, Yoshihide Hayashizaki, Harukazu Suzuki, David Hume, John Quackenbush posted to normalization pcr r by druvus on 2009-04-20 07:42:15 as along with 7 people and 1 group jfr guhjy lwaldron renatomilani trfield shikin natstreet Bioinformatics
	ProbCD: enrichment analysis accounting for categorization uncertainty [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Ricardo Vencio, Ilya Shmulevich posted to r software statistics by druvus on 2009-04-08 14:58:14 as along with 4 people and 1 group bertelsen sobolevnrm heliopais barriot baker-group
	BioconductorBuntu - A Linux Distribution that Implements a Web-Based DNA Microarray Analysis Server [My Copy] Bioinformatics (23 March 2009), btp165. by Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden posted to bioconductor linux microarray r software by druvus on 2009-03-24 08:36:44 as along with 8 people and 1 group jfr guhjy dswan djkt chrisamiller renatomilani phoenixzxl natstreet Bioinformatics
	KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1470-1471. by Jitao David D. Zhang, Stefan Wiemann posted to kegg pathway r software by druvus on 2009-03-24 08:36:00 as along with 16 people jfr Thaverkamp daforerog Vincent_Rouilly kiara coela guhjy dolchan neils VGreiff nuin chrisamiller renatomilani jmeppley natstreet phoenixzxl
	Fast stable direct fitting and smoothness selection for generalized additive models [My Copy] Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 70, No. 3. (July 2008), pp. 495-518. by Wood, N. Simon posted to r spatial statistics by druvus on 2009-03-03 15:30:03 as
	GAMs with integrated model selection using penalized regression splines and applications to environmental modelling [My Copy] Ecological Modelling (November 2002), pp. 157-177. by S. N. Wood, N. H. Augustin posted to r spatial statistics by druvus on 2009-03-03 14:55:09 as
	Computational techniques for spatial logistic regression with large data sets [My Copy] Computational Statistics & Data Analysis, Vol. 51, No. 8. (01 May 2007), pp. 3631-3653. by Christopher J. Paciorek posted to disease r spatial by druvus on 2009-03-03 14:18:47 as
	Small Area Estimation for Spatial Correlation in Watershed Erosion Assessment [My Copy] Journal of Agricultural, Biological & Environmental Statistics, Vol. 11, No. 2. (June 2006), pp. 169-182. by Petrucci, Alessandra, Salvati, Nicola posted to r spatial statistics by druvus on 2009-03-03 10:16:07 as
	RGG: a general GUI Framework for R scripts. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 74. by Ilhami Visne, Erkan Dilaveroglu, Klemens Vierlinger, et al.Martin Lauss, Ahmet Yildiz, Andreas Weinhaeusel, Christa Noehammer, Friedrich Leisch, Albert Kriegner posted to pipeline r software by druvus on 2009-03-02 10:15:18 as along with 23 people and 3 groups ltitodem operon jfr daforerog natstreet guhjy lwaldron Yanno rdiaz siebert nuin trfield pengchy acj2109 stajich jmeppley fpattyn VGreiff renatomilani cisevol erexhepa dswan jandot Mycology BergmanLab Bioinformatics
	CORNA: testing gene lists for regulation by microRNAs [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 832-833. by X. Wu, M. Watson posted to gene r software testing by druvus on 2009-02-23 09:14:05 as along with 10 people and 2 groups VR lwaldron jfr guhjy Stew djkt nuin imina natstreet mhamada microRNA Bioinformatics - CRUK
	gcExplorer: interactive exploration of gene clusters. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1089-1090. by Theresa Scharl, Friedrich Leisch posted to clustering microarray r visualisation by druvus on 2009-02-19 11:32:52 as along with 8 people jfr inesdesantiago jmeppley nuin dswan rdiaz guhjy heliopais
	Inference of structure in subdivided populations at low levels of genetic differentiation--the correlated allele frequencies model revisited. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2222-2228. by G. Guillot posted to genetics marker model r software by druvus on 2009-02-09 10:38:04 as along with 2 people carlk renewang
	apTreeshape: statistical analysis of phylogenetic tree shape. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 3. (1 February 2006), pp. 363-364. by N. Bortolussi, E. Durand, M. Blum, O. François posted to evaluation phylogeny r software by druvus on 2009-02-06 10:59:34 as
	Calculating independent contrasts for the comparative study of substitution rates. [My Copy] Journal of theoretical biology, Vol. 251, No. 4. (21 April 2008), pp. 667-678. by J. J. Welch, D. Waxman posted to genetics mutation r by druvus on 2009-02-03 15:37:51 as along with 1 person and 1 group rvosa FAB-lab
	Selecting control genes for RT-QPCR using public microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 42. by Vlad Popovici, Darlene R. Goldstein, Janine Antonov, Rolf Jaggi, Mauro Delorenzi, Pratyaksha Wirapati posted to microarray pcr r statistics by druvus on 2009-02-02 16:59:48 as along with 7 people and 1 group daforerog lwaldron jfr Zephyrus guhjy dswan natstreet Bioinformatics
	Evaluating the impact of scoring parameters on the structure of intra-specific genetic variation using RawGeno, an R package for automating AFLP scoring. [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Nils Arrigo, Jarek Tuszynski, Dorothee Ehrich, Tommy Gerdes, Nadir Alvarez posted to genetics r by druvus on 2009-01-26 15:26:09 as along with 1 person trfield
	rHVDM: an R package to predict the activity and targets of a transcription factor [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 419-420. by M. Barenco, E. Papouli, S. Shah, D. Brewer, C. J. Miller, M. Hubank posted to predictions r target tf by druvus on 2009-01-12 13:58:19 as along with 7 people bsamal frohike jfr natstreet renatomilani nuin guhjy
	WGCNA: an R package for weighted correlation network analysis [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 559. by Peter Langfelder, Steve Horvath posted to coexpression network r software by druvus on 2009-01-09 11:40:31 as along with 16 people and 2 groups enelkinsan jeremymiller daforerog sficklin lwaldron jfr ekotelnikova slv23 rdiaz guhjy natstreet cswinburne lptolik jmeppley irinamohorianu pengchy Bioinformatics Bioinformatics - CRUK
	SPRINT: A new parallel framework for R [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 558. by Jon Hill, Matthew Hambley, Thorsten Forster, et al.Muriel Mewissen, Terence Sloan, Florian Scharinger, Arthur Trew, Peter Ghazal posted to parallel r by druvus on 2009-01-09 11:39:26 as along with 22 people and 1 group humburg coela jfr rdiaz barry guhjy skembel fpattyn bertelsen Yanno pkonings natstreet lptolik paszkows nuin cisevol irinamohorianu kvjanos kshameer jmeppley GeeSharpMinor pengchy BergmanLab
	GenomeGraphs: integrated genomic data visualization with R. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Steffen Durinck, James Bullard, Paul T. Spellman, Sandrine Dudoit posted to genome r visualisation by druvus on 2009-01-09 11:29:46 as along with 18 people and 1 group operon daforerog jmeppley klo psique rdiaz guhjy nuin lptolik thomaskelder pkonings natstreet polivares Zephyrus barriot cisevol neils GeeSharpMinor BergmanLab
	Smarter clustering methods for SNP genotype calling [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2665-2671. by Yan Lin, George C. Tseng, Soo Y. Cheong, Lora J. Bean, Stephanie L. Sherman, Eleanor Feingold posted to r snp software by druvus on 2008-11-21 14:17:31 as along with 3 people TRHvidsten guhjy pkonings
	CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Paolo Uva, Emanuele de Rinaldis posted to microarray r sequence by druvus on 2008-11-19 12:08:05 as along with 4 people guhjy jfr natstreet GeeSharpMinor
	ROCR: visualizing classifier performance in R. [My Copy] Bioinformatics (11 August 2005) by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted to classification r by druvus on 2008-11-05 11:55:04 as along with 12 people and 4 groups dfdong natstreet BragilMassoud ana barry Ayest lyongu marcius schlauchi gokhan za bertelsen structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted to microarray mutual_information network r software by druvus on 2008-11-04 10:53:51 as along with 8 people sotacam kemalpak msuarezdiez jfr pengchy lptolik isimpson sjung
	Applied Statistics Using SPSS, STATISTICA, MATLAB and R [My Copy] (20 July 2007) by Joaquim posted to book matlab r statistics by druvus on 2008-11-03 12:01:33 as along with 2 people treangen natstreet
	minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 461. by Patrick Meyer, Frederic Lafitte, Gianluca Bontempi posted to bioconductor network r by druvus on 2008-10-29 19:16:50 as along with 9 people sotacam jfr pengchy dswan guhjy lptolik renatomilani phoenixzxl natstreet
	Supervised Principal Component Analysis for Gene Set Enrichment of Microarray Data with Continuous or Survival Outcomes [My Copy] Bioinformatics (27 August 2008), btn458. by Xi Chen, Lily Wang, Jonathan D. Smith, Bing Zhang posted to algorithm enrichment multivariate r by druvus on 2008-10-27 09:17:26 as along with 5 people guhjy jfr ptrobajo aconesa paszkows
	Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Alexandre Kuhn, Ruth L. Carter, Mauro Delorenzi posted to annotation bioconductor r by druvus on 2008-10-22 14:52:07 as along with 13 people anf natstreet guhjy jfr balicea dullhunk ghattem RamuAnandakrishnan heliopais ablejec zhouyu bertelsen sanchezbuelna
	CMA - A comprehensive Bioconductor package for supervised classification with high dimensional data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Martin Slawski, Martin Daumer, Anne L. Boulesteix posted to bioconductor classification r by druvus on 2008-10-20 09:30:20 as along with 10 people and 1 group zufar Stew anf jfr akastrin rdiaz nuin guhjy pengchy GeeSharpMinor Bioinformatics - CRUK
	Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 334. by Peter Li, Juan Castrillo, Giles Velarde, et al.Ingo Wassink, Stian S. Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew Pocock, Carole Goble, Stephen Oliver, Douglas Kell posted to r statistics taverna wms by druvus on 2008-10-16 12:14:54 as along with 9 people gilesvelarde pekrau fisherp zufar jfr lptolik dullhunk GeeSharpMinor guhjy
	Ecological Models and Data in R [My Copy] (21 July 2008) by Benjamin M. Bolker posted to book r statistics by druvus on 2008-09-26 13:25:06 as along with 5 people klauso cwmccabe jarlet roodubh natstreet
	Modern Applied Statistics with S [My Copy] (02 September 2003) by W. N. Venables, B. D. Ripley posted to book r statistics by druvus on 2008-09-26 13:23:45 as along with 15 people and 2 groups cleeth roodubh howardjp amsantos rcs gtaralds iamtheabelman jfelipe thefillm pdlug 1stl dejang RolandKappe Fin tkdoerksen Statistics_and_Social_Science OR
	Analysis of Phylogenetics and Evolution with R (Use R) [My Copy] (27 July 2006) by Emmanuel Paradis posted to book evolution phylogeny r by druvus on 2008-09-26 13:22:11 as along with 1 person natstreet
	High performance statistical computing with parallel R: applications to biology and climate modelling [My Copy] J. Phys.: Conf. Ser., Vol. 46, No. 1. (2006), 505. by Nagiza F. Samatova, Marcia Branstetter, Auroop R. Ganguly, et al.Robert Hettich, Shiraj Khan, Guruprasad Kora, Jiangtian Li, Xiaosong Ma, Chongle Pan, Arie Shoshani, Srikanth Yoginath posted to parallel r by druvus on 2008-09-25 15:34:04 as
	Simple Parallel Statistical Computing in R [My Copy] Journal of Computational & Graphical Statistics, Vol. 16, No. 2. (June 2007), pp. 399-420. by Rossini, A.J., Tierney, Luke, Li, Na posted to parallel r by druvus on 2008-09-25 15:32:58 as
	Pvclust: an R package for assessing the uncertainty in hierarchical clustering [My Copy] Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1540-1542. by Ryota Suzuki, Hidetoshi Shimodaira posted to phylogeny r by druvus on 2008-09-25 08:45:31 as along with 10 people walshtp ltitodem jfr maryee wnpx josepe ghattem elfar quianominorleo briordan
	RReportGenerator: automatic reports from routine statistical analysis using R. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 January 2008), pp. 276-278. by Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, et al.David Kieffer, Anne-Laure L. Morand, Laurent Brino, Olivier Poch posted to r by druvus on 2008-09-25 08:44:26 as along with 9 people daforerog bertelsen natstreet guhjy jfr waszak mailund maralena GeeSharpMinor
	qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. 1549-1551. by Christian Ritz, Andrej-Nikolai N. Spiess posted to pcr r statistics by druvus on 2008-09-24 09:20:49 as along with 3 people jfr natstreet guhjy
	MedlineR: an open source library in R for Medline literature data mining. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3659-3661. by S. M. Lin, P. McConnell, K. F. Johnson, J. Shoemaker posted to bioinformatics r by druvus on 2008-09-23 13:31:21 as along with 5 people and 2 groups cisevol irenas Enro BioGeek za BergmanLab dbk-lab

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distane	1
fuzzy	1
mir-396	1
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viewer	1
integration	1
proteat	1
brucella	1
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genomis	1
provenance	1
horizontal_gene_transfer	1
psbs	1
nucleotide	1
moby	1
impact	1
wgcna	1
ticks	1
seldi	1
sunflower	1
validation	1
modul	1
tantem	1
humal	1
agents	1
mrna	1
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intermine	1
convert	1
benchmark	1
caps	1
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apple	1
pce	1
dart	1
rosids	1
funding	1
automation	1
gwa	1
oligo	1
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ruby	1
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pine	1
ft_ir	1
coding	1
proteom	1
modules	1
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human_genome	1
refseq	1
cantonensis	1
java	1
anthocyanin	1
alias	1
gbrowse	1
real_time_pcr	1
fdr	1
mcl	1
probabilistic	1
iron_limitation	1
mediawiki	1
artifacts	1
google	1
cassava	1
gis	1
alfresco	1
c	1
mosquito	1
malaria	1
scientometrics	1
cod	1
future_plans	1
protease	1
transposition	1
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biotic	1
pseudomonas	1
pfam	1
metal	1
gramene	1
membrane	1
transcriptome	1
mod	1
co2	1

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