druvus's sequence [80 articles] Export

Recent papers added to druvus's library classified by the tag sequence. You can also see everyone's sequence.

	The ontology of biological sequences [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (18 November 2009), 377. by Robert Hoehndorf, Janet Kelso, Heinrich Herre posted to sequence ontology by druvus on 2009-11-23 12:54:30 as along with 8 people and 1 group richardbickerton guhjy operon mjbell allysonlister kshameer barriot dullhunk Journal picks
	Ancestors 1.0: A Web Server For Ancestral Sequence Reconstruction [My Copy] Bioinformatics (22 October 2009), btp600. by Abdoulaye B. Diallo, Vladimir Makarenkov, Mathieu Blanchette posted to sequence evolution by druvus on 2009-10-23 08:45:45 as
	Genome Sequence of the Probiotic Bacterium Bifidobacterium animalis subsp. lactis AD011triangledown [My Copy] J. Bacteriol., Vol. 191, No. 6. (15 March 2009), 1995. by Jihyun F. Kim, Haeyoung Jeong, Dong S. Yu, et al.Sang-Haeng Choi, Cheol-Goo Hur, Myeong-Soo Park, Sung H. Yoon, Dae-Won Kim, Geun E. Ji, Hong-Seog Park, Tae K. Oh posted to sequence genome announcement by druvus on 2009-10-20 14:08:40 as
	Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences [My Copy] Nature Protocols, Vol. 3, No. 10. (18 September 2008), pp. 1589-1603. by Matthieu Defrance, Rekin's Janky, Olivier Sand, Jacques van Helden posted to sequence oligo motif by druvus on 2009-10-12 17:01:27 as along with 2 people and 1 group polivares natstreet BergmanLab
	NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis [My Copy] Genome Biology, Vol. 10, No. 10. (09 October 2009), R110. by Christophe Rusniok, David Vallenet, Stephanie Floquet, et al.Helen Ewles, Coralie M. Soulama, Daniel Brown, Aurelie Lajus, Carmen Buchrieser, Claudine Medigue, Philippe Glaser, Vladimir Pelicic posted to sequence pathogen genome by druvus on 2009-10-12 10:05:34 as
	The Sequence Analysis and Management System – SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies [My Copy] Journal of Biotechnology, Vol. 140, No. 1-2. (10 March 2009), pp. 3-12. by Thomas Bekel, Kolja Henckel, Helge Küster, et al.Folker Meyer, Virginie Mittard Runte, Heiko Neuweger, Daniel Paarmann, Oliver Rupp, Martha Zakrzewski, Alfred Pühler posted to wms sequence database by druvus on 2009-09-25 11:44:54 as along with 1 person halinat
	AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes [My Copy] Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1041-1048. by Jan Mrazek, Shaohua Xie, Xiangxue Guo, Anuj Srivastava posted to sequence motif genome by druvus on 2009-09-25 11:36:01 as along with 1 person nklee
	Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 6. (2009), S18. by Alvaro M. Barrio, Erik Lagercrantz, Goran Sperber, Jonas Blomberg, Erik B. Rudloff posted to visualisation sequence das annotation by druvus on 2009-09-07 14:23:43 as
	Computation and Analysis of Genomic Multi-Sequence Alignments [My Copy] Annual Review of Genomics and Human Genetics, Vol. 8, No. 1. (9 May 2007), pp. 193-213. by Mathieu Blanchette posted to sequence review alignment by druvus on 2009-08-31 14:24:26 as along with 7 people and 1 group natstreet treangen dpollard lilou nklee maximilianh aprasad EisenLab
	The many faces of sequence alignment [My Copy] Brief Bioinform, Vol. 6, No. 1. (1 January 2005), pp. 6-22. by Serafim Batzoglou posted to sequence alignment by druvus on 2009-08-31 14:21:40 as along with 11 people and 2 groups nuttpo n00c pimmy timflutre BioNica treangen balajis dpollard sdvillal gjuggler yoanjacquemin Bioinformatics EisenLab
	CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 2. (2008), S10. by Svetlin Manavski, Giorgio Valle posted to sequence parallel alignment by druvus on 2009-08-17 10:02:49 as along with 9 people ihaque jmanning2k sterovetta operon alexgeorgiou antonkratz joule pansapiens bschaeli
	High-throughput sequence alignment using Graphics Processing Units [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 474. by Michael Schatz, Cole Trapnell, Arthur Delcher, Amitabh Varshney posted to sequence parallel alignment by druvus on 2009-08-17 10:00:51 as along with 20 people and 3 groups cthachuk aheilbut polivares naoya n00c natstreet rschulz operon orzenil Yanno guhjy sephy lusk laughcry nedwards mdimon cndewey heliopais urgi tpreeprem BergmanLab KCL & UCL Bioinformatics gatech-compgenomics
	SNAD: sequence name annotation-based designer [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (14 August 2009), 251. by Igor Sidorov, Denis Reshetov, Alexander Gorbalenya posted to sequence annotation by druvus on 2009-08-17 07:14:11 as
	Distance measures for biological sequences: Some recent approaches [My Copy] International Journal of Approximate Reasoning, Vol. 47, No. 1. (January 2008), pp. 109-124. by S. Mantaci, A. Restivo, M. Sciortino posted to alignment-free sequence by druvus on 2009-08-11 12:39:45 as
	Brucella microti: the genome sequence of an emerging pathogen. [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 352. by Stephane Audic, Magali Lescot, Jean M. Claverie, Holger Scholz posted to brucella genome pathogen sequence by druvus on 2009-08-04 13:45:22 as
	ABACAS: algorithm-based automatic contiguation of assembled sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1968-1969. by Samuel Assefa, Thomas M. Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman posted to mapping sequence by druvus on 2009-06-08 07:51:14 as along with 7 people and 1 group sconlan GustavoLacerda adamjamesreid jmeppley sandfire pengchy AlexBateman Journal picks
	SeqAn an efficient, generic C++ library for sequence analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andreas Döring, David Weese, Tobias Rausch, Knut Reinert posted to sequence software by druvus on 2009-04-29 09:00:09 as along with 16 people aheilbut MarcelSchulz n00c mmartin dquest daforerog groepl guhjy chad_davis laughcry ryanraaum nklee barriot mailund magusina reyez
	Complete genome sequence of the Q-fever pathogen Coxiella burnetii. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 9. (29 April 2003), pp. 5455-5460. by R. Seshadri, I. T. Paulsen, J. A. Eisen, et al.T. D. Read, K. E. Nelson, W. C. Nelson, N. L. Ward, H. Tettelin, T. M. Davidsen, M. J. Beanan, R. T. Deboy, S. C. Daugherty, L. M. Brinkac, R. Madupu, R. J. Dodson, H. M. Khouri, K. H. Lee, H. A. Carty, D. Scanlan, R. A. Heinzen, H. A. Thompson, J. E. Samuel, C. M. Fraser, J. F. Heidelberg posted to coxiella genome q-fever sequence by druvus on 2009-03-31 08:06:11 as along with 1 person operon
	A study on protein sequence alignment quality [My Copy] Proteins: Structure, Function, and Genetics, Vol. 46, No. 3. (2002), pp. 330-339. by Arne Elofsson posted to alignment sequence by druvus on 2009-03-30 16:31:43 as
	A new genomic resource dedicated to wood formation in Eucalyptus [My Copy] BMC Plant Biology, Vol. 9, No. 1. (2009), 36. by David Rengel, Helene San Clemente, Florence Servant, et al.Nathalie Ladouce, Etienne Paux, Patrick Wincker, Arnaud Couloux, Pierre Sivadon, Jacqueline G. Pettenati posted to database eucalyptus plant sequence by druvus on 2009-03-27 12:09:31 as along with 1 group Basu lab
	Detecting recombination in evolving nucleotide sequences [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (18 September 2006), 412. by Cheong Chan, Robert Beiko, Mark Ragan posted to evolution nucleotide recombination sequence by druvus on 2009-03-27 09:22:39 as along with 3 people chancx treangen Minty
	Phylogenetic Signals in DNA Composition: Limitations and Prospects [My Copy] Mol Biol Evol, Vol. 26, No. 5. (1 May 2009), pp. 1163-1169. by Jan Mrazek posted to phylogeny sequence by druvus on 2009-03-13 08:55:43 as along with 5 people and 1 group dakelley jmeppley skembel djkt nuin iSEEM
	Calculation of evolutionary trees from sequence data. [My Copy] Proc Natl Acad Sci U S A, Vol. 76, No. 9. (September 1979), pp. 4516-4520. by L. C. Klotz, N. Komar, R. L. Blanken, R. M. Mitchell posted to distance phylogeny sequence by druvus on 2009-02-24 12:31:23 as along with 1 person dayjm
	Sequence-based feature prediction and annotation of proteins. [My Copy] Genome biology, Vol. 10, No. 2. (2 February 2009) by Agnieszka S. Juncker, Lars J. Jensen, Andrea Pierleoni, et al.Andreas Bernsel, Michael L. Tress, Peer Bork, Gunnar von Heijne, Alfonso Valencia, Christos A. Ouzounis, Rita Casadio, Søren Brunak posted to annotation proteat sequence by druvus on 2009-02-02 17:00:57 as along with 5 people larsjuhljensen kgutwin nyyu shwu neils
	Integrating sequence, evolution and functional genomics in regulatory genomics. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), 202. by Martin Vingron, Alvis Brazma, Richard Coulson, et al.Jacques van Helden, Thomas Manke, Kimmo Palin, Olivier Sand, Esko Ukkonen posted to evolution genomics sequence by druvus on 2009-01-30 14:02:28 as along with 5 people reyez jfr cassj pawelszczesny natstreet
	STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Lars Kraemer, Bank Beszteri, Steffi G. Schwarz, et al.Christoph Held, Florian Leese, Christoph Mayer, Kevin Pohlmann, Stephan Frickenhaus posted to marker sequence software by druvus on 2009-01-30 11:39:22 as along with 1 person ysyls6
	Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Miguel Arenas, David Posada posted to coalescent sequence software statistics by druvus on 2009-01-30 10:57:40 as along with 3 people ilyashl stajich ryanraaum
	A likelihood ratio test for species membership based on DNA sequence data. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 360, No. 1462. (29 October 2005), pp. 1969-1974. by M. V. Matz, R. Nielsen posted to likelihood lrt sequence by druvus on 2009-01-30 09:10:42 as along with 1 person and 1 group kaspermunch Bioinformatics
	Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (23 January 2009), e1000267. by Stefan Engelen, Ladislas A. Trojan, Sophie Sacquin-Mora, Richard Lavery, Alessandra Carbone posted to evolution proteome sequence by druvus on 2009-01-27 11:19:36 as along with 3 people zwang phoenixzxl kshameer
	Another step toward quantifying spontaneous mutation [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 27. (July 2008), pp. 9133-9134. by Alexey S. Kondrashov posted to mutation sequence by druvus on 2009-01-26 11:47:28 as along with 1 person timflutre
	Learning to Count: Robust Estimates for Labeled Distances between Molecular Sequences. [My Copy] Molecular biology and evolution (8 January 2009) by John D D. O'Brien, Vladimir N N. Minin, Marc A A. Suchard posted to evolution sequence by druvus on 2009-01-22 09:56:03 as along with 2 people nuin gjuggler
	The Genome Sequence Of The Fish Pathogen Aliivibrio salmonicida Strain LFI1238 shows extensive evidence of gene decay [My Copy] BMC Genomics, Vol. 9 (19 December 2008), 616. by Erik, Nicholas R. Thomson posted to genome pathogen sequence by druvus on 2009-01-14 08:58:28 as
	Inferring trees. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 287-309. by S. Whelan posted to bayesian likelihood phylogeny sequence by druvus on 2009-01-13 11:17:47 as along with 1 person aprasad
	The Computational Detection of Functional Nucleotide Sequence Motifs in the Coding Regions of Organisms [My Copy] Experimental Biology and Medicine, Vol. 233, No. 6. (1 June 2008), pp. 665-673. by Harlan Robins, Michael Krasnitz, Arnold J. Levine posted to evolution gene motif sequence by druvus on 2009-01-12 14:47:49 as
	Simulation of DNA sequence evolution under models of recent directional selection [My Copy] Brief Bioinform, Vol. 10, No. 1. (24 December 2008), pp. bbn048-96. by Yuseob Kim, Thomas Wiehe posted to evolution sequence by druvus on 2009-01-12 13:24:24 as along with 3 people operon ilyashl nuin
	Evolution of Regulatory Sequences in 12 Drosophila Species [My Copy] PLoS Genet, Vol. 5, No. 1. (January 2009), e1000330. by Jaebum Kim, Xin He, Saurabh Sinha posted to drosophila evolution sequence by druvus on 2009-01-12 08:17:22 as along with 12 people and 3 groups daveGerrard kevinemamy dpollard caseybrown WanderingAengus JustinCrocker cisevol cajunsushi djkt emptyhb cabbagesofdoom Stew RockmanLab BergmanLab cis-regulatory-evolution
	Slider - Maximum use of probability information for alignment of short sequence reads and SNP detection [My Copy] Bioinformatics, Vol. 25, No. 1. (30 October 2008), pp. btn565-13. by Nawar Malhis, Yaron Butterfield, Martin Ester, Steven J. M. Jones posted to sequence snp software by druvus on 2009-01-09 11:48:36 as along with 8 people darian seb1 torfinnnome orzenil jsatkosk n00c mdimon jmeppley
	GenBlastA: enabling BLAST to identify homologous gene sequences. [My Copy] Genome research, Vol. 19, No. 1. (6 January 2009), pp. 143-149. by Rong She, Jeffrey S-C S. Chu, Ke Wang, Jian Pei, Nansheng Chen posted to blast homology sequence software by druvus on 2009-01-09 11:36:10 as along with 5 people rshe jessopher natstreet guhjy imtechnology
	Fast and flexible simulation of DNA sequence data [My Copy] Genome Research, Vol. advance access (24 November 2008), pp. x-x. by Gary Chen, Paul Marjoram, Jeffrey D. Wall posted to evolution sequence simulation by druvus on 2009-01-09 11:32:21 as along with 2 people natstreet pkonings
	Accelerating the annotation of sparse named entities by dynamic sentence selection. [My Copy] BMC bioinformatics, Vol. 9 Suppl 11 (2008) by Y. Tsuruoka, J. Tsujii, S. Ananiadou posted to annotation sequence by druvus on 2008-12-18 10:55:24 as along with 3 people and 1 group satre Effie dullhunk NaCTeM
	Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression [My Copy] PLoS ONE, Vol. 3, No. 11. (7 November 2008), e3670. by Juliette Colinas, Scott C. Schmidler, Gil Bohrer, Borislav Iordanov, Philip N. Benfey posted to expression sequence statistics by druvus on 2008-12-18 08:41:54 as along with 3 people and 2 groups robfsouza cisevol bpcusack cis-regulatory-evolution BergmanLab
	Vector space classification of DNA sequences [My Copy] Journal of Theoretical Biology, Vol. 223, No. 2. (21 July 2003), pp. 161-169. by H. Müller posted to classification pca sequence by druvus on 2008-12-17 13:06:15 as
	PatMaN: rapid alignment of short sequences to large databases [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1530-1531. by Kay Prufer, Udo Stenzel, Michael Dannemann, Richard E. Green, Michael Lachmann, Janet Kelso posted to mirna sequence software by druvus on 2008-12-09 15:33:51 as along with 7 people darian n00c natstreet cap1 guhjy heliopais reyez
	Multiple Sequence Alignment Accuracy and Phylogenetic Inference [My Copy] Systematic Biology, Vol. 55, No. 2. (April 2006), pp. 314-328. by T. Ogdenw, Michael Rosenberg posted to alignment phylogeny sequence statistics by druvus on 2008-12-09 10:13:03 as along with 3 people treangen aprasad akifumi
	Exploring the Relationship between Sequence Similarity and Accurate Phylogenetic Trees [My Copy] Molecular Biology and Evolution, Vol. 23, No. 11. (November 2006), pp. 2090-2100. by Cantarel, L. Brandi, Morrison, G. Hilary, Pearson, William posted to phylogeny sequence by druvus on 2008-12-09 10:12:31 as along with 4 people treangen gjuggler mblwhoi ArtemPankin
	Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment [My Copy] Bioinformatics (4 December 2008), btn630. by Benedict Paten, Javier Herrero, Kathryn Beal, Ewan Birney posted to clustering probabilistic sequence by druvus on 2008-12-08 11:41:56 as along with 9 people BioNica guhjy dakelley semrich gjuggler djkt rschulz birney operon
	Simple sequence repeats in different genome sequences of Shigella and comparison with high GC and AT-rich genomes. [My Copy] DNA sequence : the journal of DNA sequencing and mapping, Vol. 19, No. 3. (June 2008), pp. 167-176. by A. Hosseini, S. H. Ranade, I. Ghosh, P. Khandekar posted to genome repeat sequence by druvus on 2008-12-03 14:30:36 as
	Simple sequence repeats in mycobacterial genomes. [My Copy] J Biosci, Vol. 32, No. 1. (January 2007), pp. 3-15. by V. B. Sreenu, P. Kumar, J. Nagaraju, H. A. Nagarajam posted to genome repeat sequence by druvus on 2008-12-03 14:28:39 as along with 1 person operon
	Indexing strategies for rapid searches of short words in genome sequences. [My Copy] PLoS ONE, Vol. 2, No. 6. (2007) by C. Iseli, G. Ambrosini, P. Bucher, C. V. Jongeneel posted to algorithm alignment genome sequence by druvus on 2008-12-03 14:18:44 as along with 2 people maximilianh natstreet
	A gene expression atlas of the model legume Medicago truncatula [My Copy] The Plant Journal, Vol. 55, No. 3. (August 2008), pp. 504-513. by Benedito, A. Vagner, Torres-Jerez, et al. Ivone, Murray, D. Jeremy, Andriankaja, Andry, Allen, Stacy, Kakar, Klementina, Wandrey, Maren, Verdier, Jerome, Zuber, Helene, Ott, Thomas, Moreau, Sandra, Niebel, Andreas, Frickey, Tancred, Weiller, Georg, He, Ji, Dai, Xinbin, Zhao, X. Patrick, Tang, Yuhong, Udvardi, K. Michael posted to database genome medicago microarray sequence by druvus on 2008-12-03 08:09:14 as along with 1 person natstreet

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genome	395
software	378
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review	211
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vaccine	1
validation	1
viewer	1
visualsisation	1
wgcna	1
wheat	1
wolbachia	1

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