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	PROTEIN-LIPID INTERPLAY IN FUSION AND FISSION OF BIOLOGICAL MEMBRANES [My Copy] Annual Review of Biochemistry, Vol. 72, No. 1. (2003), pp. 175-207. by Leonid V. Chernomordik, Michael M. Kozlov posted to protein membrane fusion by dsmueller on 2009-11-16 15:07:14 as
	Virus Evolution: How Does an Enveloped Virus Make a Regular Structure? [My Copy] Cell, Vol. 105, No. 1. (06 April 2001), pp. 5-8. by James H. Strauss, Ellen G. Strauss posted to virus protein evolution envelope by dsmueller on 2009-11-16 11:22:57 as
	BAR domains and membrane curvature: bringing your curves to the BAR [My Copy] In Lipids, Rafts and Traffic, Vol. 72 (2005), pp. 223-231. by J. L. Gallop, H. T. McMahon posted to protein membrane fusion by dsmueller on 2009-11-11 15:39:12 as
	Membrane Remodeling from N-BAR Domain Interactions: Insights from Multi-Scale Simulation [My Copy] Biophysical Journal, Vol. 92, No. 10. (15 May 2007), pp. 3595-3602. by G. Ayton, P. Blood, G. Voth posted to protein multiscale membrane bar-domain by dsmueller on 2009-11-05 14:41:56 as along with 1 person choonpeng
	Modeling Membrane Deformations and Lipid Demixing upon Protein-Membrane Interaction: The BAR Dimer Adsorption [My Copy] Biophysical Journal, Vol. 97, No. 6. (16 September 2009), pp. 1626-1635. by George Khelashvili, Daniel Harries, Harel Weinstein posted to protein modeling membrane by dsmueller on 2009-11-05 13:19:16 as along with 2 people loison sobolevnrm
	New Insights into BAR Domain-Induced Membrane Remodeling [My Copy] Biophysical Journal, Vol. 97, No. 6. (16 September 2009), pp. 1616-1625. by Gary S. Ayton, Edward Lyman, Vinod Krishna, et al.Richard D. Swenson, Carsten Mim, Vinzenz M. Unger, Gregory A. Voth posted to protein membrane bar-domain by dsmueller on 2009-11-05 13:01:40 as
	BAR Domains as Sensors of Membrane Curvature: The Amphiphysin BAR Structure [My Copy] Science, Vol. 303, No. 5657. (23 January 2004), pp. 495-499. by Brian J. Peter, Helen M. Kent, Ian G. Mills, et al.Yvonne Vallis, Butler, Philip R. Evans, Harvey T. McMahon posted to protein membrane bar-domain by dsmueller on 2009-11-05 12:58:27 as
	Mechanical unfolding intermediates in titin modules [My Copy] Nature, Vol. 402, No. 6757. (04 November 1999), pp. 100-103. by Piotr E. Marszalek, Hui Lu, Hongbin Li, et al.Mariano Carrion-Vazquez, Andres F. Oberhauser, Klaus Schulten, Julio M. Fernandez posted to protein md by dsmueller on 2009-10-05 14:02:47 as along with 2 people grahamc choonpeng
	Protein DenaturationPart C. Theoretical Models for The Mechanism of Denaturation [My Copy] In Advances in Protein Chemistry Volume 24, Vol. 24 (1970), pp. 1-95. by C. Tanford posted to protein denaturation by dsmueller on 2009-09-22 16:00:12 as
	Sequence logos: a new way to display consensus sequences [My Copy] Nucl. Acids Res., Vol. 18, No. 20. (25 October 1990), pp. 6097-6100. by Thomas D. Schneider, R. Michael Stephens posted to protein bioinformatics aminoacidsequence by dsmueller on 2009-09-09 18:45:40 as
	WebLogo: a sequence logo generator. [My Copy] Genome research, Vol. 14, No. 6. (1 June 2004), pp. 1188-1190. by Gavin E. Crooks, Gary Hon, John-Marc M. Chandonia, Steven E. Brenner posted to protein bioinformatics aminoacidsequence by dsmueller on 2009-09-09 18:39:00 as along with 16 people and 2 groups saunders daforerog ramonvidal gwallau ivankel GustavoLacerda rpetrenko calderonv hplatero dfgreen Mehlhorn analogAI indigoviolet xiaobeizhao sobolevnrm yevishere EisenLab baker-group
	CDD: a conserved domain database for interactive domain family analysis. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by A. Marchler-Bauer, J. B. Anderson, M. K. Derbyshire, et al.C. Deweese-Scott, N. R. Gonzales, M. Gwadz, L. Hao, S. He, D. I. Hurwitz, J. D. Jackson, Z. Ke, D. Krylov, C. J. Lanczycki, C. A. Liebert, C. Liu, F. Lu, S. Lu, G. H. Marchler, M. Mullokandov, J. S. Song, N. Thanki, R. A. Yamashita, J. J. Yin, D. Zhang, S. H. Bryant posted to database domain protein by dsmueller on 2009-06-04 12:42:28 as along with 1 person balajis
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to database protein structure by dsmueller on 2009-05-17 22:51:27 as along with 47 people and 5 groups loison ubcg08l trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	Conformational changes of the flavivirus E glycoprotein. [My Copy] Structure (London, England : 1993), Vol. 12, No. 9. (September 2004), pp. 1607-1618. by Ying Zhang, Wei Zhang, Steven Ogata, et al.David Clements, James H. Strauss, Timothy S. Baker, Richard J. Kuhn, Michael G. Rossmann posted to conformation envelope flavivirus low-ph protein by dsmueller on 2009-05-17 22:11:57 as along with 2 people wxvrqs feltesm
	pH-induced alterations in the fusogenic spike protein of Semliki Forest virus [My Copy] J. Cell Biol., Vol. 101, No. 6. (1 December 1985), pp. 2284-2291. by M. Kielian, A. Helenius posted to envelope low-ph protein sfv virus by dsmueller on 2009-05-17 22:00:14 as
	MMDB: annotating protein sequences with Entrez's 3D-structure database [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D298-D300. by Wang, Yanli, Addess, et al.J. Kenneth, Chen, Jie, Geer, Y. Lewis, He, Jane, He, Siqian, Lu, Shennan, Madej, Thomas, Marchler-Bauer, Aron, Thiessen, A. Paul, Zhang, Naigong, Bryant, H. Stephen posted to protein structure by dsmueller on 2009-05-16 21:08:08 as along with 1 person ssgong
	Alphavirus and flavivirus glycoproteins: Structures and functions [My Copy] Cell, Vol. 81, No. 5. (June 1995), pp. 651-653. by A. Helenius posted to alphavirus flavivirus fusion protein by dsmueller on 2009-05-16 20:36:57 as
	Urea and Guanidinium Chloride Denature Protein L in Different Ways in Molecular Dynamics Simulations☆ [My Copy] Biophysical Journal, Vol. 94, No. 12. (June 2008), pp. 4654-4661. by C. Camilloni, Guerini, I. Eberini, E. Gianazza, R. A. Broglia, G. Tiana posted to denaturation guanidinium md protein urea by dsmueller on 2009-05-15 16:09:23 as
	Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 8. (24 February 2009), pp. 2595-2600. by Woon K. Lim, JÃ¶rg RÃ¶sgen, S. Walter Englander posted to denaturation guanidinium protein urea by dsmueller on 2009-05-14 21:53:15 as along with 5 people abende qshao amishp barry kevinchannon
	Cytochrome c551 as a model system for protein folding [My Copy] Biophysical Chemistry, Vol. 100, No. 1-3. (15 January 2003), pp. 409-419. by M. Brunori, Maria G. Bigotti, Francesca Cutruzzolà, Stefano Gianni, Carlo Travaglini-Allocatelli posted to cytochrome folding protein by dsmueller on 2009-05-12 20:51:44 as along with 1 person sassattack
	Structure and Energetics of the Hydrogen-Bonded Backbone in Protein Folding [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 339-362. by Wayne D. Bolen, George D. Rose posted to denaturant protein structure urea by dsmueller on 2009-05-12 18:46:14 as
	Is There or Isn't There? The Case for (and Against) Residual Structure in Chemically Denatured Proteins [My Copy] Critical Reviews in Biochemistry & Molecular Biology, Vol. 40, No. 4. (2005), pp. 181-189. by Evan R. Mccarney, Jonathan E. Kohn, Kevin W. Plaxco, Michael M. Cox posted to denaturation protein urea by dsmueller on 2009-05-12 18:26:32 as
	Force fields for protein simulations [My Copy] Advances in Protein Chemistry, Vol. 66 (2003), pp. 27-85. by Jay W. Ponder, David A. Case posted to amber md protein by dsmueller on 2009-05-11 22:26:54 as
	Differences in the Postfusion Conformations of Full-Length and Truncated Class II Fusion Protein E of Tick-Borne Encephalitis Virus [My Copy] J. Virol., Vol. 79, No. 10. (15 May 2005), pp. 6511-6515. by Karin Stiasny, Christian Kossl, Franz X. Heinz posted to fusion protein tbe by dsmueller on 2009-05-03 19:19:13 as
	Growth restriction of dengue virus type 2 by site-specific mutagenesis of virus-encoded glycoproteins [My Copy] J Gen Virol, Vol. 79, No. 11. (1 November 1998), pp. 2631-2639. by M. J. Pryor, R. C. Gualano, B. Lin, A. D. Davidson, P. J. Wright posted to attenuation dengue envelope mutagenesis protein by dsmueller on 2009-04-23 15:58:18 as
	Amino Acid Substitution(s) in the Stem-Anchor Region of Langat Virus Envelope Protein Attenuates Mouse Neurovirulence [My Copy] Virology, Vol. 286, No. 1. (20 July 2001), pp. 54-61. by Michael R. Holbrook, Haolin Ni, Robert E. Shope, Alan D. Barrett posted to envelope flavivirus mutant protein by dsmueller on 2009-04-23 15:55:00 as
	Adaptation of Tick-Borne Encephalitis Virus to BHK-21 Cells Results in the Formation of Multiple Heparan Sulfate Binding Sites in the Envelope Protein and Attenuation In Vivo [My Copy] J. Virol., Vol. 75, No. 12. (15 June 2001), pp. 5627-5637. by Christian W. Mandl, Helga Kroschewski, Steven L. Allison, et al.Regina Kofler, Heidemarie Holzmann, Tamara Meixner, Franz X. Heinz posted to attenuation envelope protein tbe by dsmueller on 2009-04-23 15:28:46 as
	MMDB: Entrez's 3D-structure database [My Copy] Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 474-477. by Jie Chen, John B. Anderson, Carol Deweese-Scott, et al.Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant posted to protein structure tool by dsmueller on 2009-04-23 12:40:45 as along with 1 person flbarroso
	Protein Denaturation [My Copy] In Advances in Protein Chemistry Volume 23, Vol. 23 (1968), pp. 121-282. by C. Tanford posted to denaturation protein by dsmueller on 2009-04-21 10:32:52 as along with 1 person yxue
	Hydrogen bonding in globular proteins [My Copy] Progress in Biophysics and Molecular Biology, Vol. 44, No. 2. (1984), pp. 97-179. by E. N. Baker, R. E. Hubbard posted to electrostatics hydrogenbonds protein by dsmueller on 2009-04-20 14:06:30 as
	Structural requirements for low-pH-induced rearrangements in the envelope glycoprotein of tick-borne encephalitis virus [My Copy] J. Virol., Vol. 70, No. 11. (1 November 1996), pp. 8142-8147. by K. Stiasny, S. L. Allison, A. Marchler-Bauer, C. Kunz, F. X. Heinz posted to envelope ph protein tbe by dsmueller on 2009-04-18 18:08:37 as
	Exploring the Role of the Solvent in the Denaturation of a Protein: A Molecular Dynamics Study of the DNA Binding Domain of the 434 Repressor [My Copy] Biochemistry, Vol. 34, No. 46. (1 November 1995), pp. 15057-15067. by Celia A. Schiffer, Volker Doetsch, Kurt Wuethrich, Wilfred F. van Gunsteren posted to denaturation md protein urea by dsmueller on 2009-04-16 17:26:37 as
	Molecular Dynamics Simulations of the Unfolding of Barnase in Water and 8 M Aqueous Urea† [My Copy] Biochemistry, Vol. 36, No. 24. (1 June 1997), pp. 7313-7329. by Julian Tirado-Rives, Modesto Orozco, William L. Jorgensen posted to md protein unfolding urea by dsmueller on 2009-04-16 17:23:13 as
	The molecular basis for the chemical denaturation of proteins by urea [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 9. (29 April 2003), pp. 5142-5147. by Brian J. Bennion, Valerie Daggett posted to denaturation md protein urea by dsmueller on 2009-04-16 17:16:31 as along with 1 person abende
	Simulations of Macromolecules in Protective and Denaturing Osmolytes: Properties of Mixed Solvent Systems and Their Effects on Water and Protein Structure and Dynamics [My Copy] Methods in Enzymology, Vol. 428 (2007), pp. 373-396. by David A. Beck, Brian J. Bennion, Darwin O. Alonso, Valerie Daggett posted to denaturation md protein urea by dsmueller on 2009-04-16 14:21:31 as along with 1 person and 1 group whitead Jiang Research Group
	Toward an Accurate Theoretical Framework for Describing Ensembles for Proteins under Strongly Denaturing Conditions [My Copy] Biophysical Journal, Vol. 91, No. 5. (1 September 2006), pp. 1868-1886. by Hoang T. Tran, Rohit V. Pappu posted to denaturation md protein by dsmueller on 2009-04-16 13:29:08 as along with 3 people yxue choonpeng rph
	Interaction of Urea with Amino Acids: Implications for Urea-Induced Protein Denaturation [My Copy] Journal of the American Chemical Society, Vol. 129, No. 51. (1 December 2007), pp. 16126-16131. by Martin C. Stumpe, Helmut Grubmuller posted to denaturation md protein urea by dsmueller on 2009-04-16 09:12:47 as
	The Control of Protein Stability and Association by Weak Interactions with Water: How Do Solvents Affect These Processes? [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 22, No. 1. (1993), pp. 67-97. by Serge N. Timasheff posted to protein urea by dsmueller on 2009-04-15 17:41:35 as along with 2 people pavanghatty mikaellund
	Nonpolar Group Participation in the Denaturation of Proteins by Urea and Guanidinium Salts. Model Compound Studies [My Copy] Journal of the American Chemical Society, Vol. 86, No. 3. (1 February 1964), pp. 508-514. by Donald B. Watlaufer, Sunit K. Malik, Leon Stoller, Ronald L. Coffin posted to guanidinium protein urea by dsmueller on 2009-04-15 11:03:46 as
	Persistence of Native-Like Topology in a Denatured Protein in 8 M Urea [My Copy] Science, Vol. 293, No. 5529. (20 July 2001), pp. 487-489. by David Shortle, Michael S. Ackerman posted to protein urea by dsmueller on 2009-04-15 11:01:59 as along with 2 people thamelry allmensch
	Protein interactions with urea and guanidinium chloride: A calorimetric study [My Copy] Journal of Molecular Biology, Vol. 226, No. 2. (July 1992), pp. 491-505. by George I. Makhatadze, Peter L. Privalov posted to guanidinium protein urea by dsmueller on 2009-04-15 10:59:37 as
	Clusters of charged residues in protein three-dimensional structures. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 16. (6 August 1996), pp. 8350-8355. by Z. Y. Zhu, S. Karlin posted to charge protein by dsmueller on 2009-04-09 13:47:32 as along with 1 person Ema
	Functional Domains within Fusion Proteins: Prospectives for Development of Peptide Inhibitors of Viral Cell Fusion [My Copy] Bioscience Reports, Vol. 20 (2000), pp. 535-555. by Yechiel Shai posted to fusion protein by dsmueller on 2009-04-08 15:42:22 as

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cytochrome	63
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urea	50
fusion	48
protein	43
ph	25
flavivirus	23
dengue	20
influenza	19
c	18
denaturation	16
membrane	16
hemagglutinin	13
viral	13
folding	13
tbe	12
structure	11
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histidine	6
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mutagenesis	2
hydrogenbonds	2
water	2
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database	2
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nmr	1
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pocket	1
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modeling	1
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membrane_fusion	1
guanidine	1
low_ph	1
secondary-structure	1
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