Integrating ARC Grid Middleware with Taverna Workflows. Export

@article{citeulike:2570298, abstract = {SUMMARY: This work presents two independent approaches for a seamless integration of computational grids with the bioinformatics workflow suite Taverna. These are supported by a unique relational database to link applications with grid resources and presents those as workflow elements. A web portal facilitates its collaborative maintenance. The first approach implements a gateway service to handle authentication certificates and all communication with the grid. It reads the database to spawn web services for workflow elements which are in turn used by Taverna. The second approach lets Taverna communicate with the grid on its own, by means of a newly developed plug-in. It reads the database and executes the needed tasks directly on the grid. While the gateway service is non-intrusive, the plug-in has technical advantages, e. g., by allowing data to remain on the grid while being passed between workflow elements. AVAILABILITY: http://grid.inb.uni-luebeck.de/ CONTACT: bayer@inb.uni-luebeck.de.}, address = {University of L\"{u}beck, Institute for Neuro- and Bioinformatics, 23538 L\"{u}beck, Germany.}, author = {Krabbenh\"{o}ft, Hajo N. and M\"{o}ller, Steffen and Bayer, Daniel}, citeulike-article-id = {2570298}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btn095}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/9/1221}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/18353787}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=18353787}, citeulike-linkout-4 = {http://grid.inb.uni-luebeck.de}, day = {19}, doi = {10.1093/bioinformatics/btn095}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {arc, grid, middleware, mygrid, nordugrid, taverna, workflow}, month = {March}, posted-at = {2008-03-21 15:39:16}, priority = {2}, title = {Integrating ARC Grid Middleware with Taverna Workflows.}, url = {http://dx.doi.org/10.1093/bioinformatics/btn095}, year = {2008} }

TY - JOUR ID - citeulike:2570298 L3 - citeulike-article-id:2570298 N2 - SUMMARY: This work presents two independent approaches for a seamless integration of computational grids with the bioinformatics workflow suite Taverna. These are supported by a unique relational database to link applications with grid resources and presents those as workflow elements. A web portal facilitates its collaborative maintenance. The first approach implements a gateway service to handle authentication certificates and all communication with the grid. It reads the database to spawn web services for workflow elements which are in turn used by Taverna. The second approach lets Taverna communicate with the grid on its own, by means of a newly developed plug-in. It reads the database and executes the needed tasks directly on the grid. While the gateway service is non-intrusive, the plug-in has technical advantages, e. g., by allowing data to remain on the grid while being passed between workflow elements. AVAILABILITY: http://grid.inb.uni-luebeck.de/ CONTACT: bayer@inb.uni-luebeck.de. JF - Bioinformatics SN - 1460-2059 AD - University of Lübeck, Institute for Neuro- and Bioinformatics, 23538 Lübeck, Germany. TI - Integrating ARC Grid Middleware with Taverna Workflows. KW - arc KW - grid KW - middleware KW - mygrid KW - nordugrid KW - taverna KW - workflow AU - Krabbenhöft, Hajo AU - Möller, Steffen AU - Bayer, Daniel PY - 2008/03/19/ UR - http://dx.doi.org/10.1093/bioinformatics/btn095 ER -