PathBuilder--open source software for annotating and developing pathway resources Export

@article{citeulike:5253847, abstract = {Summary: We have developed PathBuilder, an open-source web application to annotate biological information pertaining to signaling pathways and to create web-based pathway resources. PathBuilder enables annotation of molecular events including protein-protein interactions, enzyme-substrate relationships and protein translocation events either manually or through automated importing of data from other databases. Salient features of PathBuilder include automatic validation of data formats, built-in modules for visualization of pathways, automated import of data from other pathway resources, export of data in several standard data exchange formats and an application programming interface for retrieving existing pathway datasets. Availability: PathBuilder is freely available for download at http://pathbuilder.sourceforge.net/ under the terms of GNU lesser general public license (LGPL: http://www.gnu.org/copyleft/lesser.html). The software is platform independent and has been tested on Windows and Linux platforms. Contact: pandey@jhmi.edu Supplementary information: Supplementary data are available at Bioinformatics online. 10.1093/bioinformatics/btp453}, author = {Kandasamy, Kumaran and Keerthikumar, Shivakumar and Raju, Rajesh and Keshava Prasad, T. S. and Ramachandra, Y. L. and Mohan, Sujatha and Pandey, Akhilesh}, citeulike-article-id = {5253847}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp453}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/25/21/2860.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/25/21/2860.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/19628504}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=19628504}, day = {1}, doi = {10.1093/bioinformatics/btp453}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {pathway}, month = {November}, number = {21}, pages = {2860--2862}, posted-at = {2009-10-25 20:30:54}, priority = {2}, title = {PathBuilder--open source software for annotating and developing pathway resources}, url = {http://dx.doi.org/10.1093/bioinformatics/btp453}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:5253847 L3 - citeulike-article-id:5253847 N2 - Summary: We have developed PathBuilder, an open-source web application to annotate biological information pertaining to signaling pathways and to create web-based pathway resources. PathBuilder enables annotation of molecular events including protein-protein interactions, enzyme-substrate relationships and protein translocation events either manually or through automated importing of data from other databases. Salient features of PathBuilder include automatic validation of data formats, built-in modules for visualization of pathways, automated import of data from other pathway resources, export of data in several standard data exchange formats and an application programming interface for retrieving existing pathway datasets. Availability: PathBuilder is freely available for download at http://pathbuilder.sourceforge.net/ under the terms of GNU lesser general public license (LGPL: http://www.gnu.org/copyleft/lesser.html). The software is platform independent and has been tested on Windows and Linux platforms. Contact: pandey@jhmi.edu Supplementary information: Supplementary data are available at Bioinformatics online. 10.1093/bioinformatics/btp453 IS - 21 JF - Bioinformatics SN - 1460-2059 EP - 2862 TI - PathBuilder--open source software for annotating and developing pathway resources VL - 25 SP - 2860 KW - pathway AU - Kandasamy, Kumaran AU - Keerthikumar, Shivakumar AU - Raju, Rajesh AU - Keshava Prasad, TS AU - Ramachandra, YL AU - Mohan, Sujatha AU - Pandey, Akhilesh PY - 2009/11/01/ UR - http://dx.doi.org/10.1093/bioinformatics/btp453 ER -