The Systems Biology Graphical Notation Export

@article{citeulike:5394760, abstract = {Circuit diagrams and Unified Modeling Language diagrams are just two examples of standard visual languages that help accelerate work by promoting regularity, removing ambiguity and enabling software tool support for communication of complex information. Ironically, despite having one of the highest ratios of graphical to textual information, biology still lacks standard graphical notations. The recent deluge of biological knowledge makes addressing this deficit a pressing concern. Toward this goal, we present the Systems Biology Graphical Notation (SBGN), a visual language developed by a community of biochemists, modelers and computer scientists. SBGN consists of three complementary languages: process diagram, entity relationship diagram and activity flow diagram. Together they enable scientists to represent networks of biochemical interactions in a standard, unambiguous way. We believe that SBGN will foster efficient and accurate representation, visualization, storage, exchange and reuse of information on all kinds of biological knowledge, from gene regulation, to metabolism, to cellular signaling.}, author = {Novere, Nicolas L. and Hucka, Michael and Mi, Huaiyu and Moodie, Stuart and Schreiber, Falk and Sorokin, Anatoly and Demir, Emek and Wegner, Katja and Aladjem, Mirit I. and Wimalaratne, Sarala M. and Bergman, Frank T. and Gauges, Ralph and Ghazal, Peter and Kawaji, Hideya and Li, Lu and Matsuoka, Yukiko and Villeger, Alice and Boyd, Sarah E. and Calzone, Laurence and Courtot, Melanie and Dogrusoz, Ugur and Freeman, Tom C. and Funahashi, Akira and Ghosh, Samik and Jouraku, Akiya and Kim, Sohyoung and Kolpakov, Fedor and Luna, Augustin and Sahle, Sven and Schmidt, Esther and Watterson, Steven and Wu, Guanming and Goryanin, Igor and Kell, Douglas B. and Sander, Chris and Sauro, Herbert and Snoep, Jacky L. and Kohn, Kurt and Kitano, Hiroaki}, citeulike-article-id = {5394760}, citeulike-linkout-0 = {http://dx.doi.org/10.1038/nbt.1558}, citeulike-linkout-1 = {http://dx.doi.org/10.1038/nbt.1558}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19668183}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19668183}, day = {07}, doi = {10.1038/nbt.1558}, issn = {1087-0156}, journal = {Nature Biotechnology}, keywords = {douglas-kell, mike-hucka, nicolas-le-novere, sbgn, sbml}, month = {August}, number = {8}, pages = {735--741}, posted-at = {2009-08-18 13:03:19}, priority = {2}, publisher = {Nature Publishing Group}, title = {The Systems Biology Graphical Notation}, url = {http://dx.doi.org/10.1038/nbt.1558}, volume = {27}, year = {2009} }

TY - JOUR ID - citeulike:5394760 L3 - citeulike-article-id:5394760 N2 - Circuit diagrams and Unified Modeling Language diagrams are just two examples of standard visual languages that help accelerate work by promoting regularity, removing ambiguity and enabling software tool support for communication of complex information. Ironically, despite having one of the highest ratios of graphical to textual information, biology still lacks standard graphical notations. The recent deluge of biological knowledge makes addressing this deficit a pressing concern. Toward this goal, we present the Systems Biology Graphical Notation (SBGN), a visual language developed by a community of biochemists, modelers and computer scientists. SBGN consists of three complementary languages: process diagram, entity relationship diagram and activity flow diagram. Together they enable scientists to represent networks of biochemical interactions in a standard, unambiguous way. We believe that SBGN will foster efficient and accurate representation, visualization, storage, exchange and reuse of information on all kinds of biological knowledge, from gene regulation, to metabolism, to cellular signaling. IS - 8 JF - Nature Biotechnology SN - 1087-0156 EP - 741 TI - The Systems Biology Graphical Notation PB - Nature Publishing Group VL - 27 SP - 735 KW - douglas-kell KW - mike-hucka KW - nicolas-le-novere KW - sbgn KW - sbml AU - Novere, Nicolas AU - Hucka, Michael AU - Mi, Huaiyu AU - Moodie, Stuart AU - Schreiber, Falk AU - Sorokin, Anatoly AU - Demir, Emek AU - Wegner, Katja AU - Aladjem, Mirit AU - Wimalaratne, Sarala AU - Bergman, Frank AU - Gauges, Ralph AU - Ghazal, Peter AU - Kawaji, Hideya AU - Li, Lu AU - Matsuoka, Yukiko AU - Villeger, Alice AU - Boyd, Sarah AU - Calzone, Laurence AU - Courtot, Melanie AU - Dogrusoz, Ugur AU - Freeman, Tom AU - Funahashi, Akira AU - Ghosh, Samik AU - Jouraku, Akiya AU - Kim, Sohyoung AU - Kolpakov, Fedor AU - Luna, Augustin AU - Sahle, Sven AU - Schmidt, Esther AU - Watterson, Steven AU - Wu, Guanming AU - Goryanin, Igor AU - Kell, Douglas AU - Sander, Chris AU - Sauro, Herbert AU - Snoep, Jacky AU - Kohn, Kurt AU - Kitano, Hiroaki PY - 2009/08/07/ UR - http://dx.doi.org/10.1038/nbt.1558 ER -