CiteULike: dullhunk's sbml [24 articles]

	A method for visualizing CellML models [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3012-3019. by S. M. Wimalaratne, M. D. B. Halstead, C. M. Lloyd, M. T. Cooling, E. J. Crampin, P. F. Nielsen posted to visualization sbml cellml by dullhunk on 2009-11-04 19:14:40 as along with 2 people dagmar ngehlenborg
	KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (08 October 2009), 324. by Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos N. Kolisis posted to systems-biology sbml kgml kegg by dullhunk on 2009-10-12 11:48:21 as along with 7 people and 1 group Thaverkamp sillitoe trogdor druvus ptrobajo reyez renatomilani Orengo Group Journal Picks
	Saint: a lightweight integration environment for model annotation [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3026-3027. by Allyson L. Lister, Matthew Pocock, Morgan Taschuk, Anil Wipat posted to sbml saint matthew-pocock anil-wipat allyson-lister by dullhunk on 2009-09-09 12:01:56 as along with 3 people and 1 group reyez dswan allysonlister Bioinformatics
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to sbml sbgn nicolas-le-novere mike-hucka douglas-kell by dullhunk on 2009-08-18 13:03:19 as along with 37 people and 3 groups greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	libAnnotationSBML: a library for exploiting SBML annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2292-2293. by Neil Swainston, Pedro Mendes posted to systems-biology sbml pedro-mendes neil-swainston by dullhunk on 2009-06-29 11:27:59 as along with 7 people and 1 group guhjy irenas neilswainston jonathancooper jmuhlich jvb Effie NaCTeM
	SBML2L(A)T(E)X: conversion of SBML files into human-readable reports. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1455-1456. by A. Dräger, H. Planatscher, D. Motsou Wouamba, et al.A. Schröder, M. Hucka, L. Endler, M. Golebiewski, W. Müller, A. Zell posted to latex sbml sbml2latex systems-biology by dullhunk on 2009-05-14 17:28:58 as along with 5 people and 1 group tonamswish sobolevnrm guhjy nuin renatomilani baker-group
	Systems Biology Metabolic Modeling Assistant (SBMM): An ontology-based tool for the integration of metabolic data in kinetic modeling. [My Copy] Bioinformatics (Oxford, England) (2 February 2009) by Armando Reyes-Palomares, Raul Montañez, Alejando Del Real-Chicharro, et al.Othmane Chniber, Amine Kerzazi, Ismael Navas-Delgado, Miguel, José, Francisca Sánchez-Jiménez posted to chebi copasi cytoscape kegg miriam sbgn sbml sbmm by dullhunk on 2009-02-06 11:11:58 as along with 6 people and 1 group sobolevnrm mdstobbe agomez imina dagmar allysonlister baker-group
	Applications of Semantic Web Methodologies and Techniques to Biology and Bioinformatics [My Copy] (2008), pp. 200-239. by Paolo Romano, Andrea Splendiani posted to andrea-splendiani biodash cites-taverna cytoscape hclsig paolo-romano sbml semantic-web by dullhunk on 2009-01-12 12:04:16 as along with 4 people Vincent_Rouilly druvus egonw fgibson
	Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger [My Copy] Molecular Systems Biology, Vol. 4 (25 March 2008) by Mikael R. Andersen, Michael L. Nielsen, Jens Nielsen posted to aspergillus sbml by dullhunk on 2008-12-05 11:09:54 as along with 5 people dadiamah JeremyZucker schwartzjmc egonw westoll
	Progress being made on standards for use in data sharing [My Copy] Nature, Vol. 456, No. 7218. (05 November 2008), pp. 29-29. by Douglas B. Kell posted to big-data biopax cellml douglas-kell miriam sbml by dullhunk on 2008-11-10 15:30:08 as along with 3 people pmendes applebyb druvus
	Web-based applications for building, managing and analysing kinetic models of biological systems. [My Copy] Briefings in bioinformatics (19 September 2008) by Dong-Yup Y. Lee, Rajib Saha, Faraaz Noor Khan N. Yusufi, Wonjun Park, Iftekhar A A. Karimi posted to sbml by dullhunk on 2008-10-20 11:57:16 as along with 1 person agomez
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, Yalcin K. Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasic, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to dils henry jamboree markus-herrgard neil-swainston nettab sbml systems-biology yeast by dullhunk on 2008-10-10 08:29:03 as along with 22 people and 2 groups m_j pmendes windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk michaelbarton ptrobajo neils pengchy tmmurali MetabolicModeling BergmanLab
	Comparing simulation results of SBML capable simulators. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1963-1965. by Frank T. Bergmann, Herbert M. Sauro posted to sbml by dullhunk on 2008-08-26 11:32:30 as along with 7 people peterli Vincent_Rouilly agomez guhjy ozzy11111 sjcockell reyez
	Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis. [My Copy] Eur J Biochem, Vol. 269, No. 16. (August 2002), pp. 3894-3904. by L. Pritchard, D. B. Kell posted to biomodels douglas-kell gochebi sbml by dullhunk on 2008-08-08 14:43:39 as along with 6 people and 2 groups pmendes schwartzjmc peterli michaelbarton dbk LeightonP streptomyces dbk-lab
	The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models [My Copy] Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 524-531. by M. Hucka, A. Finney, H. M. Sauro, et al.H. Bolouri, J. C. Doyle, H. Kitano, A. P. Arkin, B. J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, S. Dronov, E. D. Gilles, M. Ginkel, V. Gor, I. I. Goryanin, W. J. Hedley, T. C. Hodgman, J. H. Hofmeyr, P. J. Hunter, N. S. Juty, J. L. Kasberger, A. Kremling, U. Kummer, N. Le Novère, L. M. Loew, D. Lucio, P. Mendes, E. Minch, E. D. Mjolsness, Y. Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, J. C. Schaff, B. E. Shapiro, T. S. Shimizu, H. D. Spence, J. Stelling, K. Takahashi, M. Tomita, J. Wagner, J. Wang posted to athel-cornish-bowden dils gochebi mike-hucka nettab sbml by dullhunk on 2008-08-06 09:01:55 as along with 20 people and 2 groups jporternj daforerog whitead antonkratz michaelbarton allysonlister rh020 shikin subhacom irenas husain easr balajis wnpx jbchang lenov nicholasflann pmendes csanford AlexanderPico Jiang Research Group dbk-lab
	WikiPathways: Pathway Editing for the People [My Copy] PLoS Biol, Vol. 6, No. 7. (22 July 2008), e184. by Alexander R. Pico, Thomas Kelder, Martijn P. van Iersel, Kristina Hanspers, Bruce R. Conklin, Chris Evelo posted to biopax gpml pathway sbml wiki by dullhunk on 2008-07-30 08:32:22 as along with 23 people and 2 groups irenas neilswainston abhishek_tiwari sinhaa rolawren daforerog PaoloRomano thegoose2 fisherp fgibson guhjy psique ptrobajo cerami AlexanderPico thomaskelder iBartomeus renatomilani ajaymalik jarredmccaffrey laurianw amarois tharris ConklinLab behavior_flexibility
	Integration of constraints documented in SBML, SBO, and the SBML Manual facilities validation of biological models [My Copy] Journal of Integrative Bioinformatics, Vol. 4, No. 3. (2007), 80. by Allyson Lister, Matthew Pocock, Anil Wipat posted to gochebi sbml sbo by dullhunk on 2008-07-28 13:05:38 as along with 2 people pauldobson allysonlister
	Computing Chemical Organizations in Biological Networks. [My Copy] Bioinformatics (Oxford, England) (14 May 2008) by F Centler, C Kaleta, P Speroni S. di Fenizio, Peter Dittrich posted to sbml by dullhunk on 2008-05-16 14:47:47 as along with 2 people bertelsen reyez
	LibSBML: an API library for SBML. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 6. (15 March 2008), pp. 880-881. by Benjamin J. Bornstein, Sarah M. Keating, Akiya Jouraku, Michael Hucka posted to libsbml perl python sbml systems-biology by dullhunk on 2008-02-06 15:52:57 as along with 10 people bertelsen silverballer47 jvb allysonlister schwartzjmc agomez guhjy lenov maralena pmendes
	Automated manipulation of systems biology models using libSBML within Taverna workflows [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 January 2008), pp. 287-289. by Peter Li, Tom Oinn, Stian Soiland, Douglas B. Kell posted to libsbml mygrid sbml systems-biology taverna workflow by dullhunk on 2007-12-07 11:07:37 as along with 11 people and 1 group pekrau leemond31 Scis0000002 pmendes druvus guhjy chad_davis fisherp bootsy dbk alanrw dbk-lab
	BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006), pp. D689-691. by N. Le Novère, B. Bornstein, A. Broicher, et al.M. Courtot, M. Donizelli, H. Dharuri, L. Li, H. Sauro, M. Schilstra, B. Shapiro, J. L. Snoep, M. Hucka posted to dils gochebi nettab sbml sbo by dullhunk on 2007-11-15 13:10:30 as along with 11 people and 2 groups irenas jporternj yujiangwang peterli behindtherabbit allysonlister shikin wnpx dagmar lenov pmendes dIEMoSIRIS compneur
	Minimum information requested in the annotation of biochemical models (MIRIAM) [My Copy] Nature Biotechnology, Vol. 23, No. 12. (06 December 2005), pp. 1509-1515. by Nicolas Le Novère, Andrew Finney, Michael Hucka, et al.Upinder S. Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L. Snoep, Hugh D. Spence, Barry L. Wanner posted to miriam sbml systems-biology by dullhunk on 2007-11-15 11:51:48 as along with 15 people and 2 groups perkeo irenas jmuhlich bertelsen moonhouse schwartzjmc tjtaylor Vincent_Rouilly allysonlister michaelbarton subhacom dagmar lenov pmendes leilaperie dIEMoSIRIS compneur
	The virtual human: Towards a global systems biology of multiscale, distributed biochemical network models. [My Copy] IUBMB Life, Vol. 59, No. 11. (November 2007), pp. 689-695. by D. B. Kell posted to douglas-kell fistful journal-club pathway sbml taverna visualization by dullhunk on 2007-11-06 11:08:56 as along with 6 people and 1 group pauldobson druvus reyez fisherp dbk alanrw dbk-lab
	SBML-PET: a Systems Biology Markup Language-based parameter estimation tool [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2704-2705. by Zi, Zhike, Klipp, Edda posted to sbml by dullhunk on 2007-11-02 16:38:05 as along with 4 people cannin jrbanga csgillespie Ronalddonald

dullhunk's sbml [24 articles] Export

dullhunk's tags

semantic-web	151
web-services	126
defrost	125
ontology	99
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