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dwf's library [89 articles]

Recent papers added to dwf's library.
  • Combining Conjugate Direction Methods with Stochastic Approximation of Gradients
    (2002)
    by N Schraudolph, T Graepel
    posted to stochasticgradientdescent onlinelearning minibatch conjugategradient by dwf on 2008-04-30 08:58:53 as *** along with 1 person bamberg
  • Sparse Gaussian Processes using Pseudo-inputs
    Neural Information Processing Systems 18 (2005)
    by E Snelson, Z Ghahramani
    posted to approximate gaussianprocess gp machinelearning sparse by dwf on 2008-01-28 17:58:24 as *** along with 2 people vlachmore daniel51
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
    posted to machinelearning microarray by dwf on 2007-12-24 10:27:01 as ** along with 8 people and 1 group brianb jyuh tmmurali frohike cjeans nedwards shikin blackm0k Bioinformatics
  • Learning overcomplete representations.
    Neural Comput, Vol. 12, No. 2. (February 2000), pp. 337-365.
    by MS Lewicki, TJ Sejnowski
    posted to learning machinelearning neuroscience overcomplete by dwf on 2007-12-17 05:20:36 as ** along with 1 person ganeshrnaik
  • Generative models for discovering sparse distributed representations
    Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 352, No. 1358. (1997), pp. 1177-1190.
    by Hinton, Z Ghahramani
    posted to bayesian generative machinelearning neuralnetwork sparse thesis by dwf on 2007-10-19 01:10:35 as **
  • Multiscale conditional random fields for image labeling
    Computer Vision and Pattern Recognition, 2004. CVPR 2004. Proceedings of the 2004 IEEE Computer Society Conference on, Vol. 2 (2004), pp. II-695-II-702 Vol.2.
    by Xuming He, RS Zemel, MA Carreira-Perpinan
    posted to crf labelling machinelearning objectrecognition thesis vision by dwf on 2007-10-19 01:09:31 as ** along with 2 people assad79 zeppe
  • Discriminative training for object recognition using image patches
    Computer Vision and Pattern Recognition, 2005. CVPR 2005. IEEE Computer Society Conference on, Vol. 2 (2005), pp. 157-162 vol. 2.
    by T Deselaers, D Keysers, H Ney
    posted to discriminative machinelearning objectrecognition patches thesis by dwf on 2007-10-19 01:08:18 as ** along with 1 person xiangang
  • notes Generative versus discriminative methods for object recognition
    Computer Vision and Pattern Recognition, 2005. CVPR 2005. IEEE Computer Society Conference on, Vol. 2 (2005), pp. 258-265 vol. 2.
    by I Ulusoy, CM Bishop
    posted to discriminative generative machinelearning objectrecognition review thesis by dwf on 2007-10-19 01:07:24 as read
  • Image analysis for automatic segmentation of cytoplasms and classification of Rac1 activation.
    Cytometry A, Vol. 57, No. 1. (January 2004), pp. 22-33.
    by J Lindblad, C Wählby, E Bengtsson, A Zaltsman
    posted to classification microscopy multicellular segmentation thesis by dwf on 2007-09-25 01:40:56 as **
  • Image analysis via the general theory of moments
    Journal of the Optical Society of America (1917-1983), Vol. 70 (August 1980), pp. 920-930.
    by MR Teague
    posted to imageprocessing moments thesis vision by dwf on 2007-09-25 01:37:09 as **
  • A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks
    Cytometry Part A, Vol. 56A, No. 1. (2003), pp. 23-36.
    by Gang Lin, Umesh Adiga, Kathy Olson, John F Guzowski, Carol A Barnes, Badrinath Roysam
    posted to 3d microscopy segmentation subcellular thesis vision watershed by dwf on 2007-09-25 01:35:52 as ** along with 1 person hueifang
  • The watershed transformation applied to image segmentation
    (1991)
    by S Beucher
    posted to segmentation thesis vision watershed by dwf on 2007-09-25 01:34:48 as **
  • Feature subset selection using a genetic algorithm
    Intelligent Systems and Their Applications, IEEE [see also IEEE Intelligent Systems], Vol. 13, No. 2. (1998), pp. 44-49.
    by J Yang, V Honavar
    posted to featureselection geneticalgorithm thesis by dwf on 2007-09-25 01:33:58 as **
  • Efficient and Robust Feature Extraction by Maximum Margin Criterion
    (2004)
    by Haifeng Li, Tao Jiang, Keshu Zhang
    edited by Sebastian Thrun, Lawrence Saul, Bernhard schölkopf
    posted to bibtex-import featureselection kernel maxmargin nips thesis by dwf on 2007-09-25 01:32:58 as **
  • Efficient and Robust Feature Extraction by Maximum Margin Criterion
    (2004)
    by Haifeng Li, Tao Jiang, Keshu Zhang
    edited by Sebastian Thrun, Lawrence Saul, Bernhard schölkopf
    posted to analysis discriminant extraction face feature kernel linear methods problem recognition sample size small featureselection by dwf on 2007-09-25 01:31:18 as **
  • Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy
    Biomedical Engineering, IEEE Transactions on, Vol. 53, No. 4. (2006), pp. 762-766.
    by Xiaowei Chen, Xiaobo Zhou, STC Wong
    posted to classification machinelearning microscopy segmentation subcellular thesis timeseries tracking video vision by dwf on 2007-09-25 01:24:23 as ** along with 1 person singhsh
  • A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images.
    BMC Bioinformatics, Vol. 7 (2006)
    by SC Chen, RF Murphy
    posted to classification graphicalmodels machinelearning proteinlocalization thesis by dwf on 2007-09-25 01:19:07 as ** along with 1 person jyuh
  • Statistical and structural approaches to texture
    Proceedings of the IEEE, Vol. 67, No. 5. (1979), pp. 786-804.
    by RM Haralick
    posted to statistical texture thesis vision by dwf on 2007-09-25 01:07:15 as ** along with 1 person luispedro
  • Objective Evaluation of Differences in Protein Subcellular Distribution
    pp. 61-65.
    by EJS Roques, RF Murphy
    posted to machinelearning proteinlocalization subcellular thesis by dwf on 2007-09-25 01:06:48 as **
  • Automated determination of protein subcellular locations from 3D fluorescence microscope images
    Biomedical Imaging, 2002. Proceedings. 2002 IEEE International Symposium on (2002), pp. 867-870.
    by M Velliste, RF Murphy
    posted to 3d microscopy proteinlocalization subcellular thesis by dwf on 2007-09-25 01:05:57 as **
  • Immunofluorescence microscopy.
    Methods Cell Biol, Vol. 48 (1995), pp. 365-394.
    by DM Miller, DC Shakes
    posted to microscopy thesis by dwf on 2007-09-25 01:05:09 as **
  • Robust classification of subcellular location patterns in fluorescence microscope images
    Neural Networks for Signal Processing, 2002. Proceedings of the 2002 12th IEEE Workshop on (2002), pp. 67-76.
    by RF Murphy, M Velliste, G Porreca
    posted to classification machinelearning microscopy proteinlocalization subcellular thesis by dwf on 2007-09-25 01:04:47 as **
  • Texture features for browsing and retrieval of image data
    Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. 18, No. 8. (1996), pp. 837-842.
    by BS Manjunath, WY Ma
    posted to feature texture thesis vision by dwf on 2007-09-25 01:03:48 as ** along with 1 person saulo
  • Feature reduction for improved recognition of subcellular location patterns in fluorescence microscope images
    Manipulation and Analysis of Biomolecules, Cells, and Tissues, Vol. 4962, No. 1. (2003), pp. 307-318.
    by Kai Huang, Meel Velliste, Robert F Murphy
    edited by Dan V Nicolau, Joerg Enderlein, Robert C Leif, Daniel L Farkas
    posted to featureselection machinelearning microscopy proteinlocalization subcellular thesis by dwf on 2007-09-25 01:03:15 as **
  • Automated subcellular localization and quantification of protein expression in tissue microarrays
    Nat Med, Vol. 8, No. 11. (November 2002), pp. 1323-1328.
    by Robert L Camp, Gina G Chung, David L Rimm
    posted to microarray proteinlocalization subcellular by dwf on 2007-09-25 01:01:29 as **
  • Textural features for image classification
    IEEE Transactions on Systems, Man, and Cybernetics, Vol. SMC-3 (1973), pp. 610-621.
    by Rm Haralick, Dinstein, K Shanmugan
    posted to classification feature texture thesis vision by dwf on 2007-09-25 01:00:40 as **
  • Automated Recognition of Intracellular Organelles in Confocal Microscope Images
    Traffic, Vol. 3, No. 1. (2002), pp. 66-73.
    by A Danckaert, E Gonzalez-Couto, L Bollondi, N Thompson, B Hayes
    posted to machinelearning microscopy subcellular thesis by dwf on 2007-09-25 00:54:46 as **
  • Robust classification of subcellular location patterns in high resolution 3D fluorescence microscope images
    Engineering in Medicine and Biology Society, 2004. IEMBS '04. 26th Annual International Conference of the IEEE, Vol. 1 (2004), pp. 1632-1635 Vol.3.
    by Xiang Chen, RF Murphy
    posted to 3d classification machinelearning microscopy proteinlocalization thesis by dwf on 2007-09-25 00:54:07 as **
  • Location proteomics: building subcellular location trees from high-resolution 3D fluorescence microscope images of randomly tagged proteins
    Manipulation and Analysis of Biomolecules, Cells, and Tissues, Vol. 4962, No. 1. (2003), pp. 298-306.
    by Xiang Chen, Meel Velliste, Shmuel Weinstein, Jonathan W Jarvik, Robert F Murphy
    edited by Dan V Nicolau, Joerg Enderlein, Robert C Leif, Daniel L Farkas
    posted to 3d machinelearning microscopy proteinlocalization thesis by dwf on 2007-09-25 00:51:05 as **
  • notes Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images
    Cytometry, Vol. 33, No. 3. (1998), pp. 366-375.
    by Michael V Boland, Mia K Markey, Robert F Murphy
    posted to classification machinelearning microscopy subcellular thesis by dwf on 2007-09-25 00:47:48 as read
  • Classification of protein localization patterns obtained via fluorescence light microscopy
    Engineering in Medicine and Biology society, 1997. Proceedings of the 19th Annual International Conference of the IEEE, Vol. 2 (1997), pp. 594-597 vol.2.
    by MV Boland, MK Markey, RF Murphy
    posted to classifier machinelearning microscopy proteinlocalization thesis by dwf on 2007-09-25 00:28:34 as **
  • A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells
    Bioinformatics, Vol. 17, No. 12. (1 December 2001), pp. 1213-1223.
    by Michael V Boland, Robert F Murphy
    posted to classifier machinelearning microscopy neuralnetwork subcellular thesis by dwf on 2007-09-25 00:26:55 as *** along with 1 person luispedro
  • Unified segmentation
    NeuroImage, Vol. 26, No. 3. (1 July 2005), pp. 839-851.
    by John Ashburner, Karl J Friston
    posted to segmentation thesis by dwf on 2007-09-21 21:11:48 as ** along with 4 people soundray xtizon rutiah schulz
  • Dynamic causal modeling: A generative model of slice timing in fMRI
    NeuroImage, Vol. In Press, Corrected Proof
    by Stefan J Kiebel, Stefan Kloppel, Nikolaus Weiskopf, Karl J Friston
    posted to fmri generative thesis by dwf on 2007-09-21 21:11:31 as ** along with 4 people pbellec rutiah adick prerona
  • A spatially constrained generative model and an EM algorithm for image segmentation.
    IEEE Trans Neural Netw, Vol. 18, No. 3. (May 2007), pp. 798-808.
    by A Diplaros, N Vlassis, T Gevers
    posted to em generative segmentation thesis by dwf on 2007-09-21 21:10:47 as **
  • Detection and analysis of statistical differences in anatomical shape.
    Med Image Anal, Vol. 9, No. 1. (February 2005), pp. 69-86.
    by P Golland, WE Grimson, ME Shenton, R Kikinis
    posted to imaging shape statistical thesis by dwf on 2007-09-21 21:09:34 as ** along with 1 person gracev
  • notes Automatic identification of subcellular phenotypes on human cell arrays.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1130-1136.
    by C Conrad, H Erfle, P Warnat, N Daigle, T Lörch, J Ellenberg, R Pepperkok, R Eils
    posted to machinelearning microscopy phenotyping thesis by dwf on 2007-09-19 01:49:26 as read
  • Automated epiluminescence microscopy--tissue counter analysis using CART and 1-NN in the diagnosis of Melanoma.
    Skin Res Technol, Vol. 9, No. 2. (May 2003), pp. 105-110.
    by A Gerger, R Pompl, J Smolle,
    posted to 1nn cart knn machinelearning microscopy thesis by dwf on 2007-09-19 01:49:04 as **
  • A multiresolution approach to automated classification of protein subcellular location images
    BMC Bioinformatics, Vol. 8 (19 June 2007), 210.
    by Amina Chebira, Yann Barbotin, Charles Jackson, Thomas Merryman, Gowri Srinivasa, Robert F Murphy, Jelena Kovacevic
    posted to machinelearning microscopy multiresolution protein thesis by dwf on 2007-09-19 01:43:01 as **
  • notes Automated interpretation of subcellular patterns from immunofluorescence microscopy.
    J Immunol Methods, Vol. 290, No. 1-2. (July 2004), pp. 93-105.
    by Y Hu, RF Murphy
    posted to machinelearning microscopy thesis by dwf on 2007-09-19 01:40:57 as read
  • notes Toward automatic phenotyping of developing embryos from videos.
    IEEE Trans Image Process, Vol. 14, No. 9. (September 2005), pp. 1360-1371.
    by F Ning, D Delhomme, Y LeCun, F Piano, L Bottou, PE Barbano
    posted to convolutional embryo machinelearning neuralnetwork thesis video by dwf on 2007-09-19 01:15:45 as read
  • notes Machine learning for detection and diagnosis of disease.
    Annu Rev Biomed Eng, Vol. 8 (2006), pp. 537-565.
    by P Sajda
    posted to diagnosis machinelearning review thesis by dwf on 2007-09-19 01:13:41 as read
  • notes Location proteomics: a systems approach to subcellular location.
    Biochem Soc Trans, Vol. 33, No. Pt 3. (June 2005), pp. 535-538.
    by RF Murphy
    posted to imaging machinelearning protein proteinlocalization thesis by dwf on 2007-09-19 01:12:04 as read
  • High-throughput analysis of multispectral images of breast cancer tissue.
    IEEE Trans Image Process, Vol. 15, No. 8. (August 2006), pp. 2259-2268.
    by U Adiga, R Malladi, R Fernandez-Gonzalez, C Ortiz de Solorzano
    posted to breastcancer highthroughput machinelearning thesis vision by dwf on 2007-09-10 20:32:24 as **
  • Prostate cancer multi-feature analysis using trans-rectal ultrasound images.
    Phys Med Biol, Vol. 50, No. 15. (7 August 2005)
    by SS Mohamed, MM Salama, M Kamel, EF El-Saadany, K Rizkalla, J Chin
    posted to featureselection machinelearning prostatecancer thesis ultrasound by dwf on 2007-09-10 20:29:52 as **
  • Coarse-to-Fine vision-based localization by indexing scale-invariant features.
    IEEE Trans Syst Man Cybern B Cybern, Vol. 36, No. 2. (April 2006), pp. 413-422.
    by J Wang, H Zha, R Cipolla
    posted to featureselection machinelearning objectrecognition scaleinvariant thesis vision by dwf on 2007-09-10 20:28:34 as **
  • Model-based automated extraction of microtubules from electron tomography volume.
    IEEE Trans Inf Technol Biomed, Vol. 10, No. 3. (July 2006), pp. 608-617.
    by M Jiang, Q Ji, BF McEwen
    posted to electrontomography machinelearning thesis by dwf on 2007-09-10 20:27:23 as **
  • Part-based object retrieval in cluttered environment.
    IEEE Trans Pattern Anal Mach Intell, Vol. 29, No. 5. (May 2007), pp. 890-895.
    by Y Chi, MK Leung
    posted to objectrecognition thesis vision by dwf on 2007-09-10 20:26:04 as **
  • Automated extraction of fine features of kinetochore microtubules and plus-ends from electron tomography volume.
    IEEE Trans Image Process, Vol. 15, No. 7. (July 2006), pp. 2035-2048.
    by M Jiang, Q Ji, BF McEwen
    posted to electrontomography featureselection machinelearning microscopy thesis by dwf on 2007-09-10 20:24:40 as **
  • Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images.
    Cytometry, Vol. 33, No. 3. (1 November 1998), pp. 366-375.
    by MV Boland, MK Markey, RF Murphy
    posted to machinelearning microscopy thesis by dwf on 2007-09-10 20:23:30 as read
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