dylan77's library 129 articles Export

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	Positioning of chemosensory clusters in E. coli and its relation to cell division [My Copy] The EMBO Journal, Vol. 26 (2007), pp. 1615-1623. by Sebastian Thiem, David Kentner, Victor Sourjik posted to cell chemotactic cluster division ecoli ultrastructure by dylan77 on 2007-05-03 16:36:40 as
	Coordination between Chromosome Replication, Segregation, and Cell Division in Caulobacter crescentus [My Copy] J. Bacteriol., Vol. 188, No. 6. (15 March 2006), pp. 2244-2253. by Rasmus B. Jensen posted to caulobacter chromosome segregation ultrastructure by dylan77 on 2007-05-03 16:13:36 as
	Entropy-driven spatial organization of highly confined polymers: Lessons for the bacterial chromosome [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 33. (2 August 2006), pp. 12388-12393. by Suckjoon Jun, Bela Mulder posted to bacteria caulobacter chromosome ecoli entropy segregation ultrastructure by dylan77 on 2007-05-03 16:07:05 as
	The Bacterial Actin-Like Cytoskeleton [My Copy] Microbiology and Molecular Biology Reviews, Vol. 70, No. 4. (December 2006), pp. 888-909. by Rut Carballido-López posted to actin bacteria cytoskeleton ultrastructure by dylan77 on 2007-05-03 16:03:30 as
	Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. [My Copy] Nature genetics, Vol. 38, No. 12. (05 December 2006), pp. 1406-1412. by Christopher D. Herring, Anu Raghunathan, Christiane Honisch, et al.Trina Patel, M. Kenyon Applebee, Andrew R. Joyce, Thomas J. Albert, Frederick R. Blattner, Dirk van den Boom, Charles R. Cantor, Bernhard Ø. Palsson posted to comparative ecoli evolution genomics by dylan77 on 2007-05-03 05:39:43 as along with 4 people druvus yujiangwang alexl emptyhb
	Evolution of biological complexity [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 9. (25 April 2000), pp. 4463-4468. by Christoph Adami, Charles Ofria, Travis C. Collier posted to complexity evolution information_theory by dylan77 on 2007-04-23 07:57:27 as along with 5 people yyfwuhan roys tommorris anatiferous kray
	A genome-scale computational study of the interplay between transcriptional regulation and metabolism [My Copy] Mol Syst Biol, Vol. 3 (17 April 2007) by Tomer Shlomi, Yariv Eisenberg, Roded Sharan, Eytan Ruppin posted to fba genome metabolism regulation transcriptional by dylan77 on 2007-04-23 07:55:27 as along with 1 person zwang
	Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites [My Copy] Genetics, Vol. 155, No. 1. (1 May 2000), pp. 431-449. by Ziheng Yang, Rasmus Nielsen, Nick Goldman, Anne-Mette K. Pedersen posted to codon molecular_evolution selection by dylan77 on 2007-04-23 07:53:54 as along with 8 people druvus fernan BioNica Natasha Garamonfok tale gjuggler emptyhb
	Transcriptional Regulation of the CO2-Concentrating Mechanism in a Euryhaline, Coastal Marine Cyanobacterium, Synechococcus sp. Strain PCC 7002: Role of NdhR/CcmR [My Copy] J. Bacteriol., Vol. 189, No. 9. (1 May 2007), pp. 3335-3347. by Fiona J. Woodger, Donald A. Bryant, Dean G. Price posted to ccm ccmr co2 cyanobacteria regulation by dylan77 on 2007-04-23 07:46:04 as
	Determining RuBisCO activation kinetics and other rate and equilibrium constants by simultaneous multiple non-linear regression of a kinetic model [My Copy] Journal of Experimental Botany, Vol. 57, No. 14. (2006), pp. 3883-3900. by Dennis Mcnevin, Susanne von Caemmerer, Graham Farquhar posted to kinetics model rubisco by dylan77 on 2007-04-19 04:35:45 as
	Visualizing density maps with UCSF Chimera [My Copy] Journal of Structural Biology In Software tools for macromolecular microscopy, Vol. 157, No. 1. (January 2007), pp. 281-287. by Thomas D. Goddard, Conrad C. Huang, Thomas E. Ferrin posted to segmentation tomography visualization by dylan77 on 2007-03-24 22:15:22 as
	Structural and physical aspects of bacterial chromosome segregation [My Copy] Journal of Structural Biology, Vol. 156, No. 2. (November 2006), pp. 273-283. by Conrad L. Woldringh, Nanne Nanninga posted to bacteria chromosome segregation ultrastructure by dylan77 on 2007-05-03 16:20:50 as
	From The Cover: Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication [My Copy] PNAS, Vol. 101, No. 25. (22 June 2004), pp. 9257-9262. by Patrick H. Viollier, Martin Thanbichler, Patrick T. Mcgrath, et al.Lisandra West, Maliwan Meewan, Harley H. Mcadams, Lucy Shapiro posted to bacteria caulobacter chromosome segregation ultrastructure by dylan77 on 2007-05-03 16:19:39 as
	WHAT SIZE SHOULD A BACTERIUM BE? A Question of Scale [My Copy] Annual Review of Microbiology, Vol. 50, No. 1. (October 1996), pp. 317-348. by Arthur L. Koch posted to diffusion prokaryote shape size by dylan77 on 2007-04-19 08:42:12 as
	The biology of carbon dioxide [My Copy] Current Biology, Vol. 15, No. 11. (7 June 2005), pp. R406-R410. by Alistair M. Hetherington, John A. Raven posted to ccm co2 geobio by dylan77 on 2007-04-19 05:25:06 as
	Carbon Sequestration: Photosynthesis and Subsequent Processes [My Copy] Current Biology, Vol. 16, No. 5. (7 March 2006), pp. R165-R167. by John A. Raven, Alison J. Karley posted to co2 geobio sequestration by dylan77 on 2007-04-19 05:23:36 as along with 1 person and 1 group andrewirwin Biological oceanography
	Manipulation of Rubisco: the amount, activity, function and regulation [My Copy] Journal of Experimental Botany, Vol. 54, No. 386. (1 May 2003), pp. 1321-1333. by M. A. J. Parry, P. J. Andralojc, R. A. C. Mitchell, P. J. Madgwick, A. J. Keys posted to activity genetic_engineering regulation rubisco specificity by dylan77 on 2007-04-19 05:07:59 as
	Global aspects of C/N interactions determining plant–environment interactions [My Copy] Journal of Experimental Botany, Vol. 55, No. 394. (1 January 2004), pp. 11-25. by John A. Raven, Linda L. Handley, Mitchell Andrews posted to ecological_stoichiometry geobio by dylan77 on 2007-04-19 05:04:54 as
	Reconstructing Potentials of Mean Force through Time Series Analysis of Steered Molecular Dynamics Simulations [My Copy] Journal of Computational Physics, Vol. 151, No. 1. (1 May 1999), pp. 190-211. by Justin R. Gullingsrud, Rosemary Braun, Klaus Schulten posted to pmf smd by dylan77 on 2007-04-09 19:52:21 as
	Altered soil microbial community at elevated CO2 leads to loss of soil carbon [My Copy] PNAS, Vol. 104, No. 12. (20 March 2007), pp. 4990-4995. by Karen M. Carney, Bruce A. Hungate, Bert G. Drake, Patrick J. Megonigal posted to co2 geobio by dylan77 on 2007-03-22 07:45:34 as
	Three-dimensional structure of the bacterial cell wall peptidoglycan. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 12. (21 March 2006), pp. 4404-4409. by S. O. Meroueh, K. Z. Bencze, D. Hesek, et al.M. Lee, J. F. Fisher, T. L. Stemmler, S. Mobashery posted to bacteria cell_wall peptidoglycan ultrastructure by dylan77 on 2007-05-23 13:43:41 as along with 2 people mbeeby martainn
	Insights into the Autotrophic CO2 Fixation Pathway of the Archaeon Ignicoccus hospitalis: Comprehensive Analysis of the Central Carbon Metabolism [My Copy] J. Bacteriol., Vol. 189, No. 11. (1 June 2007), pp. 4108-4119. by Ulrike Jahn, Harald Huber, Wolfgang Eisenreich, Michael Hugler, Georg Fuchs posted to archae autotrophy carbon co2 metabolism by dylan77 on 2007-05-21 10:47:30 as
	The Plant-Like C2 Glycolate Cycle and the Bacterial-Like Glycerate Pathway Cooperate in Phosphoglycolate Metabolism in Cyanobacteria [My Copy] Plant Physiol., Vol. 142, No. 1. (1 September 2006), pp. 333-342. by Marion Eisenhut, Shira Kahlon, Dirk Hasse, et al.Ralph Ewald, Judy Lieman-Hurwitz, Teruo Ogawa, Wolfgang Ruth, Hermann Bauwe, Aaron Kaplan, Martin Hagemann posted to co2 cyanobacteria metabolism o2 by dylan77 on 2007-05-21 10:37:18 as
	A kinematic description of the trajectories of Listeria monocytogenes propelled by actin comet tails [My Copy] PNAS, Vol. 104, No. 20. (15 May 2007), pp. 8229-8234. by V. B. Shenoy, D. T. Tambe, A. Prasad, J. A. Theriot posted to actin kinematics listeria by dylan77 on 2007-05-21 07:15:48 as
	A welcome diversion from photorespiration [My Copy] Nature Biotechnology, Vol. 25, No. 5., pp. 539-540. by Richard C. Leegood posted to co2 ecoli metabolic_engineering o2 plant rubisco by dylan77 on 2007-05-21 04:38:34 as
	An abstract cell model that describes the self-organization of cell function in living systems [My Copy] Journal of Theoretical Biology, Vol. 246, No. 3. (7 June 2007), pp. 461-476. by Olaf Wolkenhauer, Jan-Hendrik S. Hofmeyr posted to math model systems by dylan77 on 2007-05-21 01:59:40 as
	Growth control of the eukaryote cell: a systems biology study in yeast. [My Copy] Journal of biology, Vol. 6, No. 2. (30 April 2007), 4. by Juan I. Castrillo, Leo A. Zeef, David C. Hoyle, et al.Nianshu Zhang, Andrew Hayes, David C. Gardner, Michael J. Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B. Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S. Hester, Tom P. Dunkley, Sarah R. Hart, Neil Swainston, Peter Li, Simon J. Gaskell, Norman W. Paton, Kathryn S. Lilley, Douglas B. Kell, Stephen G. Oliver posted to fba growth_rate omics yeast by dylan77 on 2007-05-20 05:58:40 as along with 13 people and 1 group cgaugain mqbphcw3 schwartzjmc neilswainston michaelbarton aalibes alexg dullhunk balabu cabbagezs Stew roys alanrw EisenLab
	par genes and the pathology of chromosome loss in Vibrio cholerae. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 2. (9 January 2007), pp. 630-635. by Yoshiharu Yamaichi, Michael A. Fogel, Matthew K. Waldor posted to chromosome par ultrastructure vibrio by dylan77 on 2007-05-07 05:42:33 as along with 1 person TorstenWaldminghaus
	A Bacterial Cell-Cycle Regulatory Network Operating in Time and Space [My Copy] Science, Vol. 301, No. 5641. (26 September 2003), pp. 1874-1877. by Harley H. Mcadams, Lucy Shapiro posted to caulobacter regulatory_network space ultrastructure by dylan77 on 2007-05-07 05:40:53 as along with 7 people and 1 group balajis nickluscombe comb lshaw fishtank jjray cerca EBI-regulation
	Understanding the shapes of bacteria just got more complicated [My Copy] Molecular Microbiology, Vol. 62, No. 1. (October 2006), pp. 1-4. by Beveridge, J. Terry posted to bacteria review shape ultrastructure by dylan77 on 2007-05-07 05:39:10 as
	MreB is important for cell shape but not for chromosome segregation of the filamentous cyanobacterium Anabaena sp. PCC 7120 [My Copy] Molecular Microbiology, Vol. 63, No. 6. (March 2007), pp. 1640-1652. by Hu, Bin, Yang, et al. Guohua, Zhao, Weixing, Zhang, Yingjiao, Zhao, Jindong posted to chromosome_segregation cyanobacteria mreb shape ultrastructure by dylan77 on 2007-05-07 05:38:19 as
	Characterization of intact subcellular bodies in whole bacteria by cryo-electron tomography and spectroscopic imaging [My Copy] Journal of Microscopy, Vol. 223, No. 1. (July 2006), pp. 40-52. by L. R. Comolli, M. Kundmann, K. H. Downing posted to bacteria organelle tomography ultrastructure by dylan77 on 2007-05-07 05:37:18 as
	The prokaryotic cytoskeleton: a putative target for inhibitors and antibiotics? [My Copy] Applied Microbiology and Biotechnology, Vol. 73, No. 1. (6 October 2006), pp. 37-47. by Waldemar Vollmer posted to antibiotic bacteria cytoskeleton ultrastructure by dylan77 on 2007-05-07 05:35:24 as
	The New Bacterial Cell Biology: Moving Parts and Subcellular Architecture [My Copy] Cell, Vol. 120, No. 5. (11 March 2005), pp. 577-586. by Zemer Gitai posted to bacteria review systems ultrastructure by dylan77 on 2007-05-07 05:32:29 as
	Organization of the Escherichia coli chromosome into macrodomains and its possible functional implications [My Copy] Journal of Structural Biology, Vol. 156, No. 2. (November 2006), pp. 304-310. by Olivier Espeli, Frederic Boccard posted to chromosome ecoli function nucleoid ultrastructure by dylan77 on 2007-05-07 05:14:57 as
	At the heart of the chromosome: SMC proteins in action [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 5., pp. 311-322. by Tatsuya Hirano posted to chromosome condensation smc ultrastructure by dylan77 on 2007-05-07 04:42:30 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Diversification and specialization of the bacterial cytoskeleton [My Copy] Current Opinion in Cell Biology In Cell structure and dynamics, Vol. 19, No. 1. (February 2007), pp. 5-12. by Zemer Gitai posted to bacteria cytoskeleton diversity ultrastructure by dylan77 on 2007-05-07 04:36:08 as
	A dynamic, mitotic-like mechanism for bacterial chromosome segregation [My Copy] Genes and Development, Vol. 20 (2006), pp. 3269-3282. by Michael A. Fogel, Matthew K. Waldor posted to bacteria chromosome mechanism segregation ultrastructure vibrio by dylan77 on 2007-05-07 04:33:27 as
	Dynamic state of DNA topology is essential for genome condensation in bacteria [My Copy] The EMBO Journal, Vol. 25 (9 November 2006), pp. 5591-5602. by Ryosuke L. Ohniwa, Kazuya Morikawa, Joongbaek Kim, et al.Toshiko Ohta, Akira Ishihama, Chieko Wada, Kunio Takeyasu posted to chromosome nucleoid topology ultrastructure by dylan77 on 2007-05-07 04:30:15 as
	A coarse-grained model for force-induced protein deformation and kinetics. [My Copy] Biophys J, Vol. 90, No. 8. (15 April 2006), pp. 2686-2697. by H. Karcher, S. E. Lee, M. R. Kaazempur-Mofrad, R. D. Kamm posted to coarse-grain force kinetics mechanical protein by dylan77 on 2007-05-07 04:27:26 as along with 1 person choonpeng
	Computational functions in biochemical reaction networks. [My Copy] Biophys. J., Vol. 67, No. 2. (1 August 1994), pp. 560-578. by A. Arkin, J. Ross posted to computation reaction_network theory by dylan77 on 2007-05-07 04:26:23 as along with 2 people and 4 groups jwdietrich lenov MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
	The Geometry of the Flux Cone of a Metabolic Network [My Copy] Biophysical Journal, Vol. 89, No. 6. (23 September 1005), pp. 3837-3845. by Clemens Wagner, Robert Urbanczik posted to fba geometry math metabolic_network by dylan77 on 2007-05-07 03:33:07 as
	The Biofuels Conundrum [My Copy] Science, Vol. 316, No. 5824. (27 April 2007), 515. by Donald Kennedy posted to biofuels news_and_views by dylan77 on 2007-05-03 17:34:15 as
	DNA–protein interactions and bacterial chromosome architecture [My Copy] Phys. Biol., Vol. 3, No. 4. (December 2006), R1. by Joel Stavans, Amos Oppenheim posted to bacteria chromosome review ultrastructure by dylan77 on 2007-05-03 16:30:41 as along with 2 people ocs madhadron
	Physics of the Bacterial Chromosome [My Copy] ADVANCED SUMMER SCHOOL IN PHYSICS 2005: Frontiers in Contemporary Physics EAV05, Vol. 809, No. 1. (2006), pp. 255-259. by Joel Stavans edited by Oscar R. Ortiz, Mauricio Carbajal, Omar Miranda posted to bacteria chromosome physics ultrastructure by dylan77 on 2007-05-03 16:27:06 as along with 1 person yoonk
	Chromosome arrangement within a bacterium [My Copy] Current Biology, Vol. 8, No. 20. (8 October 1998), pp. 1102-1109. by Aurelio A. Teleman, Peter L. Graumann, Daniel C. Lin, Alan D. Grossman, Richard Losick posted to bacteria bsubtilis chromosome ultrastructure by dylan77 on 2007-05-03 16:26:00 as
	Organization of the bacterial chromosome. [My Copy] Microbiol. Mol. Biol. Rev., Vol. 54, No. 4. (1 December 1990), pp. 502-539. by S. Krawiec, M. Riley posted to bacteria chromosome ultrastructure by dylan77 on 2007-05-03 16:23:30 as
	The bacterial cytoskeleton. [My Copy] Microbiol Mol Biol Rev, Vol. 70, No. 3. (September 2006), pp. 729-754. by Y. L. Shih, L. Rothfield posted to bacteria cytoskeleton ultrastructure by dylan77 on 2007-05-03 16:22:04 as along with 2 people smit2jam balajis
	Linear ordering and dynamic segregation of the bacterial chromosome [My Copy] PNAS, Vol. 101, No. 25. (22 June 2004), pp. 9175-9176. by Adam M. Breier, Nicholas R. Cozzarelli posted to bacteria chromosome segregation ultrastructure by dylan77 on 2007-05-03 16:18:27 as
	Dancing around the divisome: asymmetric chromosome segregation in Escherichia coli [My Copy] Genes Dev., Vol. 19, No. 19. (1 October 2005), pp. 2367-2377. by Xindan Wang, Christophe Possoz, David J. Sherratt posted to chromosome ecoli segregation ultrastructure by dylan77 on 2007-05-03 16:17:13 as

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ultrastructure	32
bacteria	21
chromosome	18
rubisco	18
co2	16
ecoli	16
model	15
regulation	10
segregation	10
cyanobacteria	9
geobio	8
evolution	7
fba	7
calvin_cycle	6
metabolic_engineering	6
diffusion	5
nucleoid	5
review	5
caulobacter	4
ccm	4
circadian	4
cytoskeleton	4
dynamics	4
hiv	4
md	4
metabolism	4
shape	4
cleavage	3
comparative	3
division	3
gag	3
molecular_evolution	3
o2	3
protease	3
reaction_network	3
smd	3
spatial	3
transcription	3
actin	2
activase	2
activity	2
bsubtilis	2
carbon	2
cell	2
channel	2
chloroplast	2
chromosome_segregation	2
coarse-grain	2
complexity	2
ecological_stoichiometry	2
expression	2
fixation	2
genetic_engineering	2
genome	2
genomics	2
information	2
information_theory	2
kinetics	2
math	2
min	2
nonlinear	2
omics	2
philosophy	2
physics	2
plant	2
pmf	2
prokaryote	2
regulatory_networks	2
signaling	2
specificity	2
systems	2
temperature	2
tomography	2
translation	2
vibrio	2
antibiotic	1
archae	1
assembly	1
autotrophy	1
biofilm	1
biofuels	1
biophyics	1
ca1p	1
carboxysome	1
catalysis	1
ccmr	1
cell_wall	1
chaos	1
chemotactic	1
chromatin	1
cluster	1
clustering	1
codon	1
codon_bias	1
computation	1
condensation	1
crowding	1
diversity	1
efficiency	1
electrostatics	1
elementary_mode	1
energy	1
entropy	1
eulerian	1
filament	1
flux	1
force	1
ftsz	1
function	1
gas	1
gene	1
geometry	1
growth	1
growth_rate	1
gyrase	1
high-throughput	1
high-througput	1
human	1
irradiance	1
kai	1
kinematics	1
large-scale	1
listeria	1
macrostate	1
mca	1
mechanical	1
mechanism	1
metabolic_cost	1
metabolic_network	1
metabolic_networks	1
metabolic_state	1
microbial_communities	1
microfluidics	1
modularity	1
module	1
motif	1
motility	1
mreb	1
n2	1
network	1
news_and_views	1
noise	1
non-equilibrium	1
ocean	1
ode	1
organelle	1
par	1
pathway	1
peptidoglycan	1
permeability	1
ph	1
phenotype	1
phylogeny	1
protein	1
protein_complex	1
protein_network	1
quantitative	1
regulatory_network	1
robustness	1
segmentation	1
selection	1
sensing	1
sequestration	1
size	1
smc	1
space	1
sporulation	1
structure	1
synthesis	1
theory	1
thermodynamics	1
thermophile	1
topoisomerase	1
topology	1
transcriptional	1
transform	1
tubulin	1
vector	1
visualization	1
yeast	1

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