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	Coarse-Grained Simulation Studies of Peptide-Induced Pore Formation☆ [My Copy] Biophysical Journal, Vol. 95, No. 9. (01 November 2008), pp. 4163-4173. by G. Illya, M. Deserno posted to surfactant proteins coarse-graining by edws on 2009-08-24 03:51:24 as along with 2 people agrossfield paulschlesinger
	Biological and synthetic membranes: What can be learned from a coarse-grained description? [My Copy] Physics Reports, Vol. 434, No. 5-6. (November 2006), pp. 113-176. by M. Muller, K. Katsov, M. Schick posted to surfactant review coarse-graining by edws on 2009-08-24 03:46:50 as along with 2 people RamuAnandakrishnan loison
	Microfluidics of cytoplasmic streaming and its implications for intracellular transport. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 10. (11 March 2008), pp. 3663-3667. by R. E. Goldstein, I. Tuval, J. W. van de Meent posted to microfluidics by edws on 2009-05-26 05:38:13 as along with 3 people fkowald stk ocs
	Coarse-grained modeling of lipids [My Copy] Chemistry and Physics of Lipids, Vol. 159, No. 2. (02 June 2009), pp. 59-66. by Sandra V. Bennun, Matthew I. Hoopes, Chenyue Xing, Roland Faller posted to surfactant coarse-graining by edws on 2009-08-24 08:59:20 as along with 3 people flbarroso sobolevnrm paulschlesinger
	Single molecule mechanics of the kinesin neck. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (14 April 2009) by Thomas Bornschlögl, Günther Woehlke, Matthias Rief posted to forces kinesin mechanobiology by edws on 2009-05-26 03:50:37 as along with 1 person barry
	Structural signature of jamming in granular media [My Copy] Nature, Vol. 435, No. 7045., pp. 1075-1078. by Eric I. Corwin, Heinrich M. Jaeger, Sidney R. Nagel posted to forces granular jamming by edws on 2009-05-25 06:22:55 as along with 3 people ccthomas kdesmond dchen
	Jammed systems in slow flow need a new statistical mechanics [My Copy] Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences, Vol. 361, No. 1805. (15 April 2003), pp. 741-751. by Jasna Brujic, Sam F. Edwards, Dmitri Grinev posted to forces granular jamming by edws on 2009-05-25 04:02:29 as
	Multiscale Modeling of Form and Function [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 208-212. by Adam J. Engler, Patrick O. Humbert, Bernhard Wehrle-Haller, Valerie M. Weaver posted to cell_adhesion mechanobiology multiscale by edws on 2009-04-28 02:21:16 as along with 2 people and 3 groups barry sobolevnrm structural_bioinformatics McCammon baker-group
	Rheology of Active-Particle Suspensions [My Copy] Physical Review Letters, Vol. 92, No. 11. (2004) by Yashodhan Hatwalne, Sriram Ramaswamy, Madan Rao, Aditi R. Simha posted to active continuum flocking rheology by edws on 2008-07-23 14:08:39 as
	Coarse-Grained Biomolecular Simulation with REACH: Realistic Extension Algorithm via Covariance Hessian☆ [My Copy] Biophysical Journal, Vol. 93, No. 10. (15 November 2007), pp. 3460-3469. by K. Moritsugu, J. Smith posted to proteins elastic_network coarse-graining by edws on 2009-11-26 03:04:48 as along with 5 people and 1 group Diego_Prada aqeel hmk sobolevnrm choonpeng baker-group
	Delayed Fracture in Porous Media [My Copy] Physical Review Letters, Vol. 95, No. 17. (Oct 2005), 175501. by Noushine S. Bonn, Philippe Vié, Xavier Chateau, Jean N. Roux, Daniel Bonn posted to porous_media fracture by edws on 2009-11-23 04:11:59 as
	The effect of disorder on the fracture nucleation process [My Copy] Physica D: Nonlinear Phenomena, Vol. 158, No. 1-4. (15 October 2001), pp. 83-104. by S. Ciliberto posted to thermal_activation fracture fiber_bundle crack by edws on 2009-11-23 03:54:02 as
	Direct Observation of Markovian Behavior of the Mechanical Unfolding of Individual Proteins☆ [My Copy] Biophysical Journal, Vol. 95, No. 2. (July 2008), pp. 782-788. by Y. Cao posted to unfolding proteins nug2 kinetics by edws on 2009-11-09 02:49:18 as along with 1 person devinli
	Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin [My Copy] Nature Physics (01 April 2006), pp. 282-286. by Jasna Brujic, Hermans, Kirstin A. Walther, Julio M. Fernandez posted to unfolding ubiquitin proteins glassy by edws on 2009-11-02 06:17:08 as along with 1 person RodolfoHermans
	Equilibrium Properties and Force-Driven Unfolding Pathways of RNA Molecules [My Copy] Physical Review Letters, Vol. 103, No. 18. (2009), 188102. by A. Imparato, A. Pelizzola, M. Zamparo posted to unfolding rna forces by edws on 2009-10-30 07:40:16 as along with 1 person samcho
	The Key Event in Force-Induced Unfolding of Titins Immunoglobulin Domains [My Copy] Vol. 79, No. 1. (1 July 2000), pp. 51-65. by Hui Lu, Klaus Schulten posted to unfolding titin proteins md by edws on 2009-10-26 07:58:57 as
	Periodic Forces Trigger a Complex Mechanical Response in Ubiquitin [My Copy] Journal of Molecular Biology, Vol. 390, No. 3. (17 July 2009), pp. 443-456. by Piotr Szymczak, Harald Janovjak posted to unfolding ubiquitin proteins coarse-graining by edws on 2009-10-26 06:27:22 as
	The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 19. (11 May 2004), pp. 7299-7304. by Michael Schlierf, Hongbin Li, Julio M. Fernandez posted to unfolding ubiquitin proteins afm by edws on 2009-10-26 06:26:40 as along with 2 people devinli choonpeng
	Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues [My Copy] Nature Structural & Molecular Biology, Vol. 3, No. 2. (01 February 1996), pp. 193-205. by Sepideh Khorasanizadeh, Iain D. Peters, Heinrich Roder posted to ubiquitin proteins kinetics folding by edws on 2009-10-23 04:23:19 as
	Kinetics of unfolding and refolding of proteins 1I. Mathematical analysis [My Copy] Journal of Molecular Biology*, Vol. 73, No. 2. (January 1973), pp. 145-163. by A. Ikai posted to proteins kinetics folding by edws on 2009-10-23 04:22:42 as
	Multiscale modeling of polymers at interfaces [My Copy] (16 Oct 2009) by Fathollah Varnik, Kurt Binder posted to polymers coarse-graining by edws on 2009-10-19 16:38:41 as
	Interatomic Potentials from First-Principles Calculations: The Force-Matching Method [My Copy] EPL (Europhysics Letters), Vol. 26, No. 8. (1994), pp. 583-588. by F. Ercolessi, J. B. Adams posted to force_matching coarse-graining by edws on 2009-10-06 02:00:30 as along with 1 person leonhardmayrhofer
	Conformations of proteins in equilibrium. [My Copy] Physical review letters, Vol. 87, No. 8. (20 August 2001) by C. Micheletti, J. R. Banavar, A. Maritan posted to proteins mean-field coarse-graining by edws on 2009-10-05 14:18:07 as
	Multiscale Mechanics of Fibrin Polymer: Gel Stretching with Protein Unfolding and Loss of Water [My Copy] Science, Vol. 325, No. 5941. (7 August 2009), pp. 741-744. by Andre E. X. Brown, Rustem I. Litvinov, Dennis E. Discher, Prashant K. Purohit, John W. Weisel posted to proteins networks fibrin blood_clots by edws on 2009-09-25 06:18:23 as
	Many-Body Electrostatic Forces between Colloidal Particles at Vanishing Ionic Strength [My Copy] Physical Review Letters, Vol. 103, No. 13. (2009), 138301. by Jason W. Merrill, Sunil K. Sainis, Eric R. Dufresne posted to electrostatic_forces colloidal_particles by edws on 2009-09-24 08:09:18 as
	Self Assembly Modulated by Interactions of Two Heterogeneously Charged Surfaces [My Copy] Physical Review Letters, Vol. 101, No. 12. (2008), 128101. by R. Brewster, P. A. Pincus, S. A. Safran posted to surfactant patches by edws on 2009-09-19 13:58:52 as along with 1 person dchen
	Fiber bundle model with stick-slip dynamics [My Copy] (17 Sep 2009) by Zoltan Halasz, Ferenc Kun posted to biomechanics by edws on 2009-09-18 03:57:29 as
	Forces and Bond Dynamics in Cell Adhesion [My Copy] Science, Vol. 316, No. 5828. (25 May 2007), pp. 1148-1153. by Evan A. Evans, David A. Calderwood posted to bonds adhesion by edws on 2009-09-16 07:27:51 as along with 6 people and 1 group TheoBioPhys devinli bobturner guhjy choonpeng devender FlowCytometry
	“Tuning in” to Mollusk Shell Nacre- and Prismatic-Associated Protein Terminal Sequences. Implications for Biomineralization and the Construction of High Performance Inorganic−Organic Composites [My Copy] Chemical Reviews, Vol. 108, No. 11. (12 November 2008), pp. 4455-4462. by John S. Evans posted to nacre biomineralization by edws on 2009-09-15 04:13:55 as along with 1 person taenneken
	Molecular Specifications of a Mineral Modulation Sequence Derived from the Aragonite-Promoting Protein n16 [My Copy] Biomacromolecules, Vol. 9, No. 7. (1 July 2008), pp. 1909-1918. by Sebastiano Collino, John S. Evans posted to nacre biomineralization by edws on 2009-09-15 04:13:06 as
	The Molecular Basis of Nacre Formation [My Copy] Science, Vol. 325, No. 5946. (11 September 2009), pp. 1351-1352. by Nils Kroger posted to nacre biomineralization by edws on 2009-09-15 04:05:29 as
	An active biopolymer network controlled by molecular motors [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. 15192-15197. by Gijsje H. Koenderink, Zvonimir Dogic, Fumihiko Nakamura, et al.Poul M. Bendix, Frederick C. MacKintosh, John H. Hartwig, Thomas P. Stossel, David A. Weitz posted to networks active actin_filaments by edws on 2009-09-15 03:48:18 as along with 1 person kevinchannon
	Colloidal glasses and gels: The interplay of bonding and caging [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. 15203-15208. by Emanuela Zaccarelli, Wilson C. K. Poon posted to glasses coarse-graining by edws on 2009-09-15 03:46:44 as along with 1 person joshBerryman
	A 13C31P REDOR NMR Investigation of the Role of Glutamic Acid Residues in Statherin- Hydroxyapatite Recognition [My Copy] Langmuir, Vol. 0, No. 0. (0000) by Moise Ndao, Jason T. Ash, Nicholas F. Breen, Gil Goobes, Patrick S. Stayton, Gary P. Drobny posted to biomineralization by edws on 2009-09-15 03:34:15 as
	The Molecular Origin of Like-Charge Arginine−Arginine Pairing in Water [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 27. (9 July 2009), pp. 9041-9045. by Jiří Vondrášek, Philip E. Mason, Jan Heyda, Kim D. Collins, Pavel Jungwirth posted to qm proteins md ions by edws on 2009-09-10 09:46:20 as along with 2 people and 1 group willard sobolevnrm baker-group
	A coarse-grained protein force field for folding and structure prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 2. (28 June 2007), pp. 394-408. by Julien Maupetit, P. Tuffery, Philippe Derreumaux posted to proteins coarse-graining by edws on 2009-09-10 03:34:21 as along with 2 people wouterboomsma choonpeng
	Numerical studies of Lifshitz interactions between dielectrics [My Copy] Physical Review A (Atomic, Molecular, and Optical Physics), Vol. 79, No. 2. (2009), 020102. by S. Pasquali, A. C. Maggs posted to dispersion by edws on 2009-09-10 03:27:29 as
	Replica Exchange Molecular Dynamics Simulations of Coarse-grained Proteins in Implicit Solvent [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 1. (8 January 2009), pp. 267-274. by Yassmine Chebaro, Xiao Dong, Rozita Laghaei, Philippe Derreumaux, Normand Mousseau posted to proteins free_energy coarse-graining by edws on 2009-09-10 03:19:39 as
	A Mapping of Realistic onto Abstract Polymer Models and an Application to Two Bisphenol Polycarbonates [My Copy] Macromolecules, Vol. 27, No. 5. (1 February 1994), pp. 1249-1255. by W. Paul, N. Pistoor posted to polymer forcefields coarse-graining by edws on 2009-09-09 07:50:42 as
	Coarse grain models and the computer simulation of soft materials [My Copy] Journal of Physics: Condensed Matter, Vol. 16, No. 15. (2004), pp. R481-R512. by Steve O. Nielsen, Carlos F. Lopez, Goundla Srinivas, Michael L. Klein posted to coarse-graining by edws on 2009-09-09 05:03:43 as along with 3 people kaz229 RamuAnandakrishnan softsimu
	Effective energy function for proteins in solution [My Copy] Proteins: Structure, Function, and Genetics, Vol. 35, No. 2. (1999), pp. 133-152. by Themis Lazaridis, Martin Karplus posted to proteins forcefields by edws on 2009-09-08 07:02:31 as along with 1 person onufriev
	Stretching to understand proteins - a survey of the protein data bank. [My Copy] Biophysical journal, Vol. 94, No. 1. (1 January 2008), pp. 6-13. by Joanna I. Sułkowska, Marek Cieplak posted to no-tag by edws on 2009-09-08 06:16:55 as along with 2 people choonpeng paulschlesinger
	Proteins in a shear flow. [My Copy] The Journal of chemical physics, Vol. 127, No. 15. (21 October 2007) by P. Szymczak, Marek Cieplak posted to unfolding shear_flow proteins by edws on 2009-09-08 06:12:25 as along with 1 person choonpeng
	Mechanical resistance of proteins explained using simple molecular models. [My Copy] Biophysical journal, Vol. 90, No. 1. (1 January 2006), pp. 287-297. by Daniel K. West, David J. Brockwell, Peter D. Olmsted, Sheena E. Radford, Emanuele Paci posted to proteins packing biomechanics by edws on 2009-09-08 06:09:23 as along with 1 person choonpeng
	Mechanically unfolding the small, topologically simple protein L. [My Copy] Biophysical journal, Vol. 89, No. 1. (July 2005), pp. 506-519. by David J. Brockwell, Godfrey S. Beddard, Emanuele Paci, et al.Dan K. West, Peter D. Olmsted, D. Alastair Smith, Sheena E. Radford posted to proteins biomechanics afm by edws on 2009-09-08 05:25:35 as along with 2 people hsekiguc choonpeng
	Identification of a Mechanical Rheostat in the Hydrophobic Core of Protein L. [My Copy] Journal of molecular biology (13 August 2009) by David P. Sadler, Eva Petrik, Yukinori Taniguchi, et al.James R. Pullen, Masaru Kawakami, Sheena E. Radford, David J. Brockwell posted to unfolding proteins packing biomechanics by edws on 2009-09-08 05:24:10 as
	Evidence on close packing and cavities in proteins. [My Copy] Current opinion in biotechnology, Vol. 6, No. 4. (August 1995), pp. 375-381. by S. J. Hubbard, P. Argos posted to proteins packing by edws on 2009-09-08 05:21:49 as
	Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins1 [My Copy] Journal of Molecular Biology, Vol. 298, No. 5. (19 May 2000), pp. 937-953. by Cecilia Clementi, Hugh Nymeyer, José N. Onuchic posted to proteins coarse-graining by edws on 2009-08-28 15:44:23 as along with 2 people aqeel choonpeng
	Changing the Mechanical Unfolding Pathway of FnIII10 by Tuning the Pulling Strength [My Copy] Biophysical Journal, Vol. 96, No. 2. (21 January 2009), pp. 429-441. by S. Mitternacht, S. Luccioli, A. Torcini, A. Imparato, A. Irback posted to unfolding proteins biomechanics by edws on 2009-08-27 14:05:48 as
	Dependence of protein mechanical unfolding pathways on pulling speeds [My Copy] The Journal of Chemical Physics, Vol. 130, No. 14. (14 April 2009), 145102. by Mai S. Li, Maksim Kouza posted to unfolding proteins biomechanics by edws on 2009-08-27 14:02:51 as along with 1 person choonpeng

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proteins	66
bibsonomy	37
coarse-graining	23
forces	23
md	20
active	19
surfactant	14
biomineralization	13
networks	13
biomechanics	12
unfolding	12
caco3	11
mechanobiology	11
polymer	10
polymers	10
protein	10
continuum	9
afm	8
elastic	8
cytoskeleton	7
flocking	7
folding	7
hydrodynamics	7
water	7
granular	6
instability	6
cell_adhesion	5
force_network	5
free_energy	5
simulation	5
stability	5
sugar	5
forcefields	4
friction	4
kinetics	4
lattice_boltzmann	4
ubiquitin	4
viscosity	4
biophysics	3
crystal	3
deformation	3
droplets	3
drops	3
experiment	3
flow	3
glycosylation	3
hydrophobicity	3
microfluidics	3
nacre	3
packing	3
spontaneous	3
swimmers	3
weighted	3
adhesion	2
allostery	2
bacteria	2
buckling	2
collapse	2
cyclotide	2
dynamics	2
energy_transfer	2
flexibility	2
fracture	2
imported	2
interfaces	2
ions	2
jamming	2
knot	2
normal_modes	2
numerical_solution	2
polarizable	2
review	2
rheology	2
self-assembly	2
viscoelastic	2
actin_filaments	1
bilayer	1
blood_clots	1
bonds	1
boundary_layers	1
branched	1
bubbles	1
budding	1
capillarity	1
channels	1
colloidal_particles	1
crack	1
dispersion	1
docking	1
elastic_network	1
electrokinetics	1
electrostatic_forces	1
fiber_bundle	1
fibrin	1
flow_visualisation	1
force_matching	1
functions	1
glasses	1
glassy	1
integral_equations	1
integrals	1
kinesin	1
knottin	1
mean-field	1
microtubule	1
microtubules	1
multiscale	1
nanotubes	1
nug2	1
patches	1
polyaspartate	1
porous_media	1
python	1
qm	1
reynolds_number	1
rna	1
shear_flow	1
slip	1
solvent_effects	1
speed_of_sound	1
spheres	1
stokes_law	1
stresses	1
structure	1
teaching	1
thermal_activation	1
titin	1
transport	1
two-phase_flow	1
velocity_distribution	1
viscous_flow	1
wavelet	1
wlc	1

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