edws's proteins [66 articles] Export

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	Coarse-Grained Biomolecular Simulation with REACH: Realistic Extension Algorithm via Covariance Hessian☆ [My Copy] Biophysical Journal, Vol. 93, No. 10. (15 November 2007), pp. 3460-3469. by K. Moritsugu, J. Smith posted to proteins elastic_network coarse-graining by edws on 2009-11-26 03:04:48 as along with 5 people and 1 group Diego_Prada aqeel hmk sobolevnrm choonpeng baker-group
	Direct Observation of Markovian Behavior of the Mechanical Unfolding of Individual Proteins☆ [My Copy] Biophysical Journal, Vol. 95, No. 2. (July 2008), pp. 782-788. by Y. Cao posted to unfolding proteins nug2 kinetics by edws on 2009-11-09 02:49:18 as along with 1 person devinli
	Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin [My Copy] Nature Physics (01 April 2006), pp. 282-286. by Jasna Brujic, Hermans, Kirstin A. Walther, Julio M. Fernandez posted to unfolding ubiquitin proteins glassy by edws on 2009-11-02 06:17:08 as along with 1 person RodolfoHermans
	The Key Event in Force-Induced Unfolding of Titins Immunoglobulin Domains [My Copy] Vol. 79, No. 1. (1 July 2000), pp. 51-65. by Hui Lu, Klaus Schulten posted to unfolding titin proteins md by edws on 2009-10-26 07:58:57 as
	Periodic Forces Trigger a Complex Mechanical Response in Ubiquitin [My Copy] Journal of Molecular Biology, Vol. 390, No. 3. (17 July 2009), pp. 443-456. by Piotr Szymczak, Harald Janovjak posted to unfolding ubiquitin proteins coarse-graining by edws on 2009-10-26 06:27:22 as
	The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 19. (11 May 2004), pp. 7299-7304. by Michael Schlierf, Hongbin Li, Julio M. Fernandez posted to unfolding ubiquitin proteins afm by edws on 2009-10-26 06:26:40 as along with 2 people devinli choonpeng
	Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues [My Copy] Nature Structural & Molecular Biology, Vol. 3, No. 2. (01 February 1996), pp. 193-205. by Sepideh Khorasanizadeh, Iain D. Peters, Heinrich Roder posted to ubiquitin proteins kinetics folding by edws on 2009-10-23 04:23:19 as
	Kinetics of unfolding and refolding of proteins 1I. Mathematical analysis [My Copy] Journal of Molecular Biology*, Vol. 73, No. 2. (January 1973), pp. 145-163. by A. Ikai posted to proteins kinetics folding by edws on 2009-10-23 04:22:42 as
	Conformations of proteins in equilibrium. [My Copy] Physical review letters, Vol. 87, No. 8. (20 August 2001) by C. Micheletti, J. R. Banavar, A. Maritan posted to proteins mean-field coarse-graining by edws on 2009-10-05 14:18:07 as
	Multiscale Mechanics of Fibrin Polymer: Gel Stretching with Protein Unfolding and Loss of Water [My Copy] Science, Vol. 325, No. 5941. (7 August 2009), pp. 741-744. by Andre E. X. Brown, Rustem I. Litvinov, Dennis E. Discher, Prashant K. Purohit, John W. Weisel posted to proteins networks fibrin blood_clots by edws on 2009-09-25 06:18:23 as
	The Molecular Origin of Like-Charge Arginine−Arginine Pairing in Water [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 27. (9 July 2009), pp. 9041-9045. by Jiří Vondrášek, Philip E. Mason, Jan Heyda, Kim D. Collins, Pavel Jungwirth posted to qm proteins md ions by edws on 2009-09-10 09:46:20 as along with 2 people and 1 group willard sobolevnrm baker-group
	A coarse-grained protein force field for folding and structure prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 2. (28 June 2007), pp. 394-408. by Julien Maupetit, P. Tuffery, Philippe Derreumaux posted to proteins coarse-graining by edws on 2009-09-10 03:34:21 as along with 2 people wouterboomsma choonpeng
	Replica Exchange Molecular Dynamics Simulations of Coarse-grained Proteins in Implicit Solvent [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 1. (8 January 2009), pp. 267-274. by Yassmine Chebaro, Xiao Dong, Rozita Laghaei, Philippe Derreumaux, Normand Mousseau posted to proteins free_energy coarse-graining by edws on 2009-09-10 03:19:39 as
	Effective energy function for proteins in solution [My Copy] Proteins: Structure, Function, and Genetics, Vol. 35, No. 2. (1999), pp. 133-152. by Themis Lazaridis, Martin Karplus posted to proteins forcefields by edws on 2009-09-08 07:02:31 as along with 1 person onufriev
	Proteins in a shear flow. [My Copy] The Journal of chemical physics, Vol. 127, No. 15. (21 October 2007) by P. Szymczak, Marek Cieplak posted to unfolding shear_flow proteins by edws on 2009-09-08 06:12:25 as along with 1 person choonpeng
	Mechanical resistance of proteins explained using simple molecular models. [My Copy] Biophysical journal, Vol. 90, No. 1. (1 January 2006), pp. 287-297. by Daniel K. West, David J. Brockwell, Peter D. Olmsted, Sheena E. Radford, Emanuele Paci posted to proteins packing biomechanics by edws on 2009-09-08 06:09:23 as along with 1 person choonpeng
	Mechanically unfolding the small, topologically simple protein L. [My Copy] Biophysical journal, Vol. 89, No. 1. (July 2005), pp. 506-519. by David J. Brockwell, Godfrey S. Beddard, Emanuele Paci, et al.Dan K. West, Peter D. Olmsted, D. Alastair Smith, Sheena E. Radford posted to proteins biomechanics afm by edws on 2009-09-08 05:25:35 as along with 2 people hsekiguc choonpeng
	Identification of a Mechanical Rheostat in the Hydrophobic Core of Protein L. [My Copy] Journal of molecular biology (13 August 2009) by David P. Sadler, Eva Petrik, Yukinori Taniguchi, et al.James R. Pullen, Masaru Kawakami, Sheena E. Radford, David J. Brockwell posted to unfolding proteins packing biomechanics by edws on 2009-09-08 05:24:10 as
	Evidence on close packing and cavities in proteins. [My Copy] Current opinion in biotechnology, Vol. 6, No. 4. (August 1995), pp. 375-381. by S. J. Hubbard, P. Argos posted to proteins packing by edws on 2009-09-08 05:21:49 as
	Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins1 [My Copy] Journal of Molecular Biology, Vol. 298, No. 5. (19 May 2000), pp. 937-953. by Cecilia Clementi, Hugh Nymeyer, José N. Onuchic posted to proteins coarse-graining by edws on 2009-08-28 15:44:23 as along with 2 people aqeel choonpeng
	Changing the Mechanical Unfolding Pathway of FnIII10 by Tuning the Pulling Strength [My Copy] Biophysical Journal, Vol. 96, No. 2. (21 January 2009), pp. 429-441. by S. Mitternacht, S. Luccioli, A. Torcini, A. Imparato, A. Irback posted to unfolding proteins biomechanics by edws on 2009-08-27 14:05:48 as
	Dependence of protein mechanical unfolding pathways on pulling speeds [My Copy] The Journal of Chemical Physics, Vol. 130, No. 14. (14 April 2009), 145102. by Mai S. Li, Maksim Kouza posted to unfolding proteins biomechanics by edws on 2009-08-27 14:02:51 as along with 1 person choonpeng
	Coarse-Grained Simulation Studies of Peptide-Induced Pore Formation☆ [My Copy] Biophysical Journal, Vol. 95, No. 9. (01 November 2008), pp. 4163-4173. by G. Illya, M. Deserno posted to surfactant proteins coarse-graining by edws on 2009-08-24 03:51:24 as along with 2 people agrossfield paulschlesinger
	Ligand binding and internal equilibiums in proteins [My Copy] Biochemistry, Vol. 11, No. 5. (1 February 1972), pp. 864-878. by Gregorio Weber posted to proteins allostery by edws on 2009-08-18 08:11:03 as
	Quantifying allosteric effects in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 59, No. 4. (01 June 2005), pp. 697-707. by Dengming Ming, Michael E. Wall posted to proteins elastic allostery by edws on 2009-08-18 07:38:32 as along with 6 people apaydin lna aqeel choonpeng ruvido cactus
	Flexibility and packing in proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 3. (5 February 2002), pp. 1274-1279. by Bertil Halle posted to flexibility proteins by edws on 2009-08-06 08:14:16 as along with 7 people and 3 groups Diego_Prada barry sobolevnrm ana aqeel allmensch hmk baker-group structural_bioinformatics Bioinformatics
	Cell water dynamics on multiple time scales [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6266-6271. by Erik Persson, Bertil Halle posted to proteins water by edws on 2009-08-06 08:08:35 as along with 4 people and 1 group qshao ocs biehl sobolevnrm baker-group
	Protein structure, stability and solubility in water and other solvents. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 359, No. 1448. (29 August 2004) by C. Nick Pace, Saul Treviño, Erode Prabhakaran, J. Martin Scholtz posted to proteins stability water by edws on 2009-08-06 04:44:44 as
	Collective Variable Description of Native Protein Dynamics [My Copy] Annual Review of Physical Chemistry, Vol. 46, No. 1. (1995), pp. 223-250. by S. Hayward, N. Go posted to normal_modes proteins by edws on 2009-07-29 10:14:19 as
	Thermodynamic stability of small-world oscillator networks: A case study of proteins [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 79, No. 5. (2009), 051922. by Jie Ren, Baowen Li posted to networks proteins by edws on 2009-07-27 07:59:40 as
	Predicting the order in which contacts are broken during single molecule protein stretching experiments [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 1. (2008), pp. 45-60. by Joanna I. Su&lstrok;kowska, Andrzej Kloczkowski, Taner Z. Sen, Marek Cieplak, Robert L. Jernigan posted to forces proteins by edws on 2009-07-27 07:23:37 as along with 1 person choonpeng
	Insights into protein flexibility: The relationship between normal modes and conformational change upon protein–protein docking [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 30. (29 July 2008), pp. 10390-10395. by Sara E. Dobbins, Victor I. Lesk, Michael J. E. Sternberg posted to docking elastic forces normal_modes proteins by edws on 2009-07-27 07:19:02 as along with 1 person ras
	Elastic Bond Network Model for Protein Unfolding Mechanics [My Copy] Physical Review Letters, Vol. 100, No. 9. (2008), 098101. by Hendrik Dietz, Matthias Rief posted to elastic force_network proteins by edws on 2009-07-27 07:16:14 as
	PDB file parser and structure class implemented in Python [My Copy] Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2308-2310. by Thomas Hamelryck, Bernard Manderick posted to proteins python structure by edws on 2009-07-24 06:29:58 as along with 7 people and 1 group klexa oteri dgruiz bicko dgront rabio massivemayhem Structural Biology Group TorVergata
	Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability [My Copy] Physical Review Letters, Vol. 80, No. 12. (23 Mar 1998), pp. 2733-2736. by Ivet Bahar, Ali R. Atilgan, Melik C. Demirel, Burak Erman posted to elastic networks proteins by edws on 2009-07-22 04:36:09 as along with 2 people choonpeng Diego_Prada
	A molecular brake, not a clutch, stops the Rhodobacter sphaeroides flagellar motor [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11582-11587. by Teuta Pilizota, Mostyn T. Brown, Mark C. Leake, Richard W. Branch, Richard M. Berry, Judith P. Armitage posted to biomechanics friction proteins by edws on 2009-07-21 04:07:26 as along with 1 person OliverHarriman
	Buckling and force propagation along intracellular microtubules [My Copy] EPL (Europhysics Letters), Vol. 84, No. 1. (2008), 18003. by Moumita Das, Alex J. Levine, F. C. Mackintosh posted to biomechanics buckling forces microtubules proteins by edws on 2009-07-20 08:43:27 as along with 1 person kshundyak
	Mechanics of Force Propagation in TonB-Dependent Outer Membrane Transport [My Copy] Vol. 93, No. 2. (15 July 2007), pp. 496-504. by James Gumbart, Michael C. Wiener, Emad Tajkhorshid posted to forces proteins by edws on 2009-07-20 08:10:23 as
	Plasma membrane deformation by circular arrays of ESCRT-III protein filaments [My Copy] J. Cell Biol., Vol. 180, No. 2. (28 January 2008), pp. 389-402. by Phyllis I. Hanson, Robyn Roth, Yuan Lin, John E. Heuser posted to biomechanics budding proteins by edws on 2009-07-20 04:58:29 as along with 1 person paulschlesinger
	Membrane Buckling Induced by Curved Filaments [My Copy] Physical Review Letters, Vol. 103, No. 3. (2009), 038101. by Martin Lenz, Daniel J. G. Crow, Jean F. Joanny posted to biomechanics buckling elastic proteins by edws on 2009-07-20 03:57:30 as
	Strain-Induced Alignment in Collagen Gels [My Copy] PLoS ONE, Vol. 4, No. 6. (16 June 2009), e5902. by David Vader, Alexandre Kabla, David Weitz, Lakshminarayana Mahadevan posted to cytoskeleton elastic networks proteins by edws on 2009-07-16 04:21:04 as
	Protein elastic network models and the ranges of cooperativity [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 30. (28 July 2009), pp. 12347-12352. by Lei Yang, Guang Song, Robert L. Jernigan posted to elastic networks proteins by edws on 2009-07-15 08:30:29 as along with 4 people Diego_Prada anuragsethi sobolevnrm apaydin
	Internal Friction Controls the Speed of Protein Folding from a Compact Configuration† [My Copy] Biochemistry, Vol. 43, No. 39. (1 October 2004), pp. 12532-12538. by Suzette A. Pabit, Heinrich Roder, Stephen J. Hagen posted to folding friction proteins by edws on 2009-07-10 06:20:23 as
	Design of therapeutic proteins with enhanced stability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 29. (21 July 2009), pp. 11937-11942. by Naresh Chennamsetty, Vladimir Voynov, Veysel Kayser, Bernhard Helk, Bernhardt L. Trout posted to hydrophobicity proteins stability by edws on 2009-07-09 06:23:39 as along with 5 people guhjy biomcgary marti phoenixzxl zwang
	First-principles design of nanomachines [My Copy] (26 Apr 2009) by Jayanth R. Banavar, Marek Cieplak, Trinh X. Hoang, Amos Maritan posted to folding polymers proteins by edws on 2009-07-06 07:41:05 as along with 2 people etas marinari
	Solute-induced retardation of water dynamics probed directly by terahertz spectroscopy [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 33. (15 August 2006), pp. 12301-12306. by U. Heugen, G. Schwaab, E. Bründermann, et al.M. Heyden, X. Yu, D. M. Leitner, M. Havenith posted to proteins sugar water by edws on 2009-07-01 03:36:35 as along with 1 person abovell
	The osmophobic effect: natural selection of a thermodynamic force in protein folding1 [My Copy] Journal of Molecular Biology, Vol. 310, No. 5. (27 July 2001), pp. 955-963. by D. W. Bolen, Ilia V. Baskakov posted to folding proteins stability sugar by edws on 2009-07-01 03:33:57 as
	A backbone-based theory of protein folding [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 45. (7 November 2006), pp. 16623-16633. by George D. Rose, Patrick J. Fleming, Jayanth R. Banavar, Amos Maritan posted to folding hydrophobicity proteins by edws on 2009-06-30 07:24:33 as along with 7 people carlosjavierna flbarroso dkoveal thaliana j3xucite choonpeng marck
	Increased Thermal Stability of Site-Selectively Glycosylated Dihydrofolate Reductase [My Copy] ChemBioChem, Vol. 6, No. 8. (2005), pp. 1338-1340. by Richard S. Swanwick, Alison M. Daines, Lai-Hock Tey, Sabine L. Flitsch, Rudolf K. Allemann posted to glycosylation proteins stability by edws on 2009-06-30 04:14:31 as
	Trehalose-protein interaction in aqueous solution [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 55, No. 1. (2004), pp. 177-186. by Roberto D. Lins, Cristina S. Pereira, Philippe H. Hünenberger posted to glycosylation proteins stability sugar water by edws on 2009-06-30 04:09:29 as

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proteins	66
bibsonomy	37
coarse-graining	23
forces	23
md	20
active	19
surfactant	14
biomineralization	13
networks	13
biomechanics	12
unfolding	12
caco3	11
mechanobiology	11
polymer	10
polymers	10
protein	10
continuum	9
afm	8
elastic	8
cytoskeleton	7
flocking	7
folding	7
hydrodynamics	7
water	7
granular	6
instability	6
cell_adhesion	5
force_network	5
free_energy	5
simulation	5
stability	5
sugar	5
forcefields	4
friction	4
kinetics	4
lattice_boltzmann	4
ubiquitin	4
viscosity	4
biophysics	3
crystal	3
deformation	3
droplets	3
drops	3
experiment	3
flow	3
glycosylation	3
hydrophobicity	3
microfluidics	3
nacre	3
packing	3
spontaneous	3
swimmers	3
weighted	3
adhesion	2
allostery	2
bacteria	2
buckling	2
collapse	2
cyclotide	2
dynamics	2
energy_transfer	2
flexibility	2
fracture	2
imported	2
interfaces	2
ions	2
jamming	2
knot	2
normal_modes	2
numerical_solution	2
polarizable	2
review	2
rheology	2
self-assembly	2
viscoelastic	2
actin_filaments	1
bilayer	1
blood_clots	1
bonds	1
boundary_layers	1
branched	1
bubbles	1
budding	1
capillarity	1
channels	1
colloidal_particles	1
crack	1
dispersion	1
docking	1
elastic_network	1
electrokinetics	1
electrostatic_forces	1
fiber_bundle	1
fibrin	1
flow_visualisation	1
force_matching	1
functions	1
glasses	1
glassy	1
integral_equations	1
integrals	1
kinesin	1
knottin	1
mean-field	1
microtubule	1
microtubules	1
multiscale	1
nanotubes	1
nug2	1
patches	1
polyaspartate	1
porous_media	1
python	1
qm	1
reynolds_number	1
rna	1
shear_flow	1
slip	1
solvent_effects	1
speed_of_sound	1
spheres	1
stokes_law	1
stresses	1
structure	1
teaching	1
thermal_activation	1
titin	1
transport	1
two-phase_flow	1
velocity_distribution	1
viscous_flow	1
wavelet	1
wlc	1

edws's proteins [66 articles] Export

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