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	Recent advances in the use of cell-penetrating peptides for medical and biological applications. [My Copy] Advanced drug delivery reviews, Vol. 61, No. 11. (30 September 2009), pp. 953-964. by Sonali B. Fonseca, Mark P. Pereira, Shana O. Kelley posted to translocation plasma_membrane peptide penetrating membrane fonsec09pdf by paulschlesinger on 2009-11-27 23:41:13 as
	Methodological and cellular aspects that govern the internalization mechanisms of arginine-rich cell-penetrating peptides. [My Copy] Advanced drug delivery reviews, Vol. 60, No. 4-5. (1 March 2008), pp. 598-607. by Ikuhiko Nakase, Toshihide Takeuchi, Gen Tanaka, Shiroh Futaki posted to peptides penetrating nakase09pdf mechanism cell cationic by paulschlesinger on 2009-11-27 23:22:27 as
	Arginine-rich cell-penetrating peptides [My Copy] FEBS Letters (16 November 2009) by Nathan Schmidt, Abhijit Mishra, Ghee H. Lai, Gerard C. L. Wong posted to translocation schmid09pdf plasma_membranes peptide penetrating intracellular eukaryotic_cells cell by paulschlesinger on 2009-11-27 23:14:36 as
	Enthalpic Contribution to Protein Stability: Insights from Atom-Based Calculations and Statistical Mechanics [My Copy] In Advances in Protein Chemistry Volume 47, Vol. 47 (1995), pp. 231-306. by T. Lazaridis, G. Archontis, M. Karplus posted to protein_folding free-energy by Diego_Prada on 2009-11-27 19:52:33 as along with 1 person flbarroso
	On the simulation of protein folding by short time scale molecular dynamics and distributed computing [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 22. (29 October 2002), pp. 14122-14125. by Alan R. Fersht posted to short_time_simus free-energy by Diego_Prada on 2009-11-27 19:30:05 as along with 2 people doktornoe jheco
	Folding and binding cascades: Dynamic landscapes and population shifts [My Copy] Protein Science, Vol. 9, No. 1. (2000), pp. 10-19. by Sandeep Kumar, Buyong Ma, Chung-Jung Tsai, Neeti Sinha, Ruth Nussinov posted to free-energy by Diego_Prada on 2009-11-27 16:11:58 as
	Estimation of protein folding probability from equilibrium simulations [My Copy] The Journal of Chemical Physics, Vol. 122, No. 18. (2005), 184901. by Francesco Rao, Giovanni Settanni, Enrico Guarnera, Amedeo Caflisch posted to transition_states protein_folding free-energy cmn by Diego_Prada on 2009-11-26 18:21:55 as
	Kinetic analysis of molecular dynamics simulations reveals changes in the denatured state and switch of folding pathways upon single-point mutation of a beta-sheet miniprotein [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 4. (2008), pp. 1185-1195. by Stefanie Muff, Amedeo Caflisch posted to transition_states free-energy cmn chapt_cmn by Diego_Prada on 2009-11-26 17:24:35 as along with 1 person RamuAnandakrishnan
	Detection of multiscale pockets on protein surfaces using mathematical morphology [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Takeshi Kawabata posted to surface simulation protein pockets multiscale kawab09pdf binding analysis by paulschlesinger on 2009-11-26 00:06:34 as
	SDS Micelles as a Membrane-Mimetic Environment for Transmembrane Segments [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by David V. Tulumello, Charles M. Deber posted to tulum09pdf sds mimetic micelle membrane helix environment alpha by paulschlesinger on 2009-11-26 00:00:34 as
	Computing time scales from reaction coordinates by milestoning [My Copy] The Journal of Chemical Physics, Vol. 120, No. 23. (2004), pp. 10880-10889. by Anton K. Faradjian, Ron Elber posted to transition_path reaction_paths methods by Diego_Prada on 2009-11-25 19:23:28 as along with 1 person apaydin
	Transition Path Sampling Methods [My Copy] Computer Simulations in Condensed Matter Systems: From Materials to Chemical Biology Volume 1 (2006), pp. 349-391. by C. Dellago, P. G. Bolhuis, P. L. Geissler posted to transition_path sampling methods chapt_cmn by Diego_Prada on 2009-11-25 19:19:57 as
	Nanotechnological applications in medicine. [My Copy] Current opinion in biotechnology, Vol. 18, No. 1. (February 2007), pp. 26-30. by Shelton D. Caruthers, Samuel A. Wickline, Gregory M. Lanza posted to review nanoparticle nanoemulsions medicine caruth07pdf by paulschlesinger on 2009-11-25 18:49:45 as along with 2 people sunnytov jasonpark1
	Molecular imaging and therapy of atherosclerosis with targeted nanoparticles. [My Copy] Journal of magnetic resonance imaging : JMRI, Vol. 25, No. 4. (April 2007), pp. 667-680. by Samuel A. Wickline, Anne M. Neubauer, Patrick M. Winter, Shelton D. Caruthers, Gregory M. Lanza posted to wickl07pdf review nanoparticle molecular imaging emulsion by paulschlesinger on 2009-11-25 18:46:17 as along with 1 person xtizon
	TRANSITION PATH SAMPLING: Throwing Ropes Over Rough Mountain Passes, in the Dark [My Copy] Annual Review of Physical Chemistry, Vol. 53, No. 1. (2002), pp. 291-318. by Peter G. Bolhuis, David Chandler, Christoph Dellago, Phillip L. Geissler posted to transition_path reaction_paths methods chapt_cmn by Diego_Prada on 2009-11-25 18:42:21 as along with 5 people doktornoe cjryan apaydin allmensch jun
	Nanomedicine opportunities for cardiovascular disease with perfluorocarbon nanoparticles. [My Copy] Nanomedicine (London, England), Vol. 1, No. 3. (October 2006), pp. 321-329. by Gregory M. Lanza, Patrick M. Winter, Shelton D. Caruthers, et al.Michael S. Hughes, Tillmann Cyrus, Jon N. Marsh, Anne M. Neubauer, Kathy C. Partlow, Samuel A. Wickline posted to perfluorcarbon nanoparticles lanza06pdf imaging disease cardiovascular by paulschlesinger on 2009-11-25 18:26:58 as
	Clinical applications of perfluorocarbon nanoparticles for molecular imaging and targeted therapeutics. [My Copy] International journal of nanomedicine, Vol. 2, No. 4. (2007), pp. 515-526. by Trung D. Tran, Shelton D. Caruthers, Michael Hughes, et al.John N. Marsh, Tillmann Cyrus, Patrick M. Winter, Anne M. Neubauer, Samuel A. Wickline, Gregory M. Lanza posted to tran07pdf tissue nanomedicine nanoemulsion imaging epitopes by paulschlesinger on 2009-11-25 18:22:15 as
	String method for the study of rare events [My Copy] Physical Review B, Vol. 66, No. 5. (12 Aug 2002), 052301. by E. Weinan, Weiqing Ren, Eric V. Eijnden posted to transition_path methods chapt_cmn by Diego_Prada on 2009-11-25 18:14:52 as along with 1 person hugo_yas
	Nudged elastic band method for finding minimum energy paths of transition [My Copy] In Classical and quantum dynamics in condensed phase simulations (1998), pp. 385-404. by H. Jónsson, G. Mills, K. W. Jacobsen posted to transition_path methods chapt_cmn by Diego_Prada on 2009-11-25 17:59:57 as
	Nanomedicine: perspective and promises with ligand-directed molecular imaging. [My Copy] European journal of radiology, Vol. 70, No. 2. (05 May 2009), pp. 274-285. by Dipanjan Pan, Gregory M. Lanza, Samuel A. Wickline, Shelton D. Caruthers posted to review promises perspective pand09pdf nanomedicine ligand by paulschlesinger on 2009-11-25 17:58:04 as along with 2 people and 1 group sunnytov sobolevnrm baker-group
	Methods for Finding Saddle Points and Minimum Energy Paths [My Copy] Theoretical Methods in Condensed Phase Chemistry (2001), pp. 269-302. by Graeme Henkelman, Gísli Jóhannesson, Hannes Jónsson posted to transition_path methods by Diego_Prada on 2009-11-25 17:40:14 as
	First-principles calculation of the folding free energy of a three-helix bundle protein [My Copy] Science, Vol. 269, No. 5222. (21 July 1995), pp. 393-396. by E. M. Boczko, Cl Brooks posted to protein_folding methods by Diego_Prada on 2009-11-25 16:48:19 as
	FROM FOLDING THEORIES TO FOLDING PROTEINS: A Review and Assessment of Simulation Studies of Protein Folding and Unfolding [My Copy] Annual Review of Physical Chemistry, Vol. 52, No. 1. (2001), pp. 499-535. by Joan E. Shea, Charles L. Brooks posted to review protein_folding methods free-energy by Diego_Prada on 2009-11-25 16:26:15 as along with 3 people scampos fjc1 allmensch
	The Protein Folding Problem [My Copy] Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 289-316. by Ken A. Dill, S. Banu Ozkan, M. Scott Shell, Thomas R. Weikl posted to review protein_folding by Diego_Prada on 2009-11-25 15:55:41 as along with 7 people dfdong siggi84 qluo doktornoe flbarroso zwang dsekaran
	Protein-Folding Dynamics: Overview of Molecular Simulation Techniques [My Copy] Annual Review of Physical Chemistry, Vol. 58, No. 1. (2007), pp. 57-83. by Harold A. Scheraga, Mey Khalili, Adam Liwo posted to review protein_folding protein_dynamics by Diego_Prada on 2009-11-25 15:52:00 as along with 3 people dgront choonpeng adilson_mohr
	Conformational Dynamics and Ensembles in Protein Folding [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 36, No. 1. (2007), pp. 395-412. by Victor Muñoz posted to review protein_dynamics free-energy by Diego_Prada on 2009-11-25 15:48:01 as along with 1 person dfdong
	Absolute comparison of simulated and experimental protein-folding dynamics [My Copy] Nature, Vol. 420, No. 6911. (20 October 2002), pp. 102-106. by Christopher D. Snow, Houbi Nguyen, Vijay S. Pande, Martin Gruebele posted to protein_folding md_history by Diego_Prada on 2009-11-25 15:37:49 as along with 3 people doktornoe fjc1 samjlord
	Structural mechanism of the recovery stroke in the Myosin molecular motor [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 19. (10 May 2005), pp. 6873-6878. by Stefan Fischer, BjÃ¶rn WindshÃ¼gel, Daniel Horak, Kenneth C. Holmes, Jeremy C. Smith posted to transition_path reaction_paths methods chapt_cmn by Diego_Prada on 2009-11-25 12:29:13 as along with 4 people and 2 groups ckmyo barry shuns yalexeev structural_bioinformatics Bioinformatics
	Tid1 is a new regulator of p53 mitochondrial translocation and apoptosis in cancer [My Copy] Oncogene, Vol. aop, No. current. (23 November 2009) by B. Y. Ahn, D. L. N. Trinh, L. D. Zajchowski, B. Lee, A. N. Elwi, S. -W Kim posted to tid1 p53 cancer apoptosis ahn09pdf by paulschlesinger on 2009-11-24 23:39:08 as
	BH3-only proteins in apoptosis and beyond: an overview. [My Copy] Oncogene, Vol. 27 Suppl 1 (December 2008) by E. Lomonosova, G. Chinnadurai posted to protein lomon08pdf bh3 beyond apoptosis by paulschlesinger on 2009-11-24 23:18:25 as
	Endocytosis and signalling: intertwining molecular networks. [My Copy] Nature reviews. Molecular cell biology, Vol. 10, No. 9. (September 2009), pp. 609-622. by Alexander Sorkin, Mark von Zastrow posted to sorkin09pdf signaling review endocytosis by paulschlesinger on 2009-11-24 21:00:52 as
	Molecular Umbrella Transport: Exceptions to the Classic Size/Lipophilicity Rule [My Copy] Journal of the American Chemical Society, Vol. 131, No. 4. (4 February 2009), pp. 1338-1339. by Mohamed Mehiri, Wen-Hua Chen, Vaclav Janout, Steven L. Regen posted to umbrella transport size polarity molecular membrane mehiri09pdf hydrophobicity by paulschlesinger on 2009-11-24 20:53:34 as along with 1 person dsekaran
	DRUG DELIVERY: Breaching the Membrane [My Copy] Science, Vol. 296, No. 5569. (3 May 2002), pp. 838-839. by Joe Alper posted to peptide nanotubes drugs deliver cellular alper02apdf by paulschlesinger on 2009-11-24 20:49:16 as
	Cellular Uptake Mechanism of Molecular Umbrella [My Copy] Bioconjugate Chemistry, Vol. 0, No. 0. (0000) by Dongtao Ge, Dewang Wu, Zuyong Wang, et al.Wei Shi, Ting Wu, Aifeng Zhang, Shimin Hong, Jun Wang, Ye Zhang, Lei Ren posted to uptake membrane intracellular interaction ge09pdf endocytosis by paulschlesinger on 2009-11-24 19:27:41 as
	Targeted molecular dynamics: A new approach for searching pathways of conformational transitions [My Copy] Journal of Molecular Graphics, Vol. 12, No. 2. (June 1994), pp. 84-89. by J. Schlitter, M. Engels, P. Krüger posted to transition_path reaction_paths problems_fel_dof methods chapt_cmn by Diego_Prada on 2009-11-24 17:52:14 as along with 2 people cactus LamBras
	Fast Diffusion of Very Long Chain Saturated Fatty Acids across a Bilayer Membrane and Their Rapid Extraction by Cyclodextrins [My Copy] Journal of Biological Chemistry, Vol. 284, No. 48. (27 November 2009), pp. 33296-33304. by Biju K. Pillai, Ravi Jasuja, Jeffrey R. Simard, James A. Hamilton posted to pillai09pdf long fatty extraction diffusion desorption cyclodextrin chain bilayer acids by paulschlesinger on 2009-11-24 01:19:08 as
	Procaspase 8 and Bax Are Up-regulated by Distinct Pathways in Streptococcal Pyrogenic Exotoxin B-induced Apoptosis [My Copy] Journal of Biological Chemistry, Vol. 284, No. 48. (27 November 2009), pp. 33195-33205. by Chia-Wen Chang, Wan-Hua Tsai, Woei-Jer Chuang, et al.Yee-Shin Lin, Jiunn-Jong Wu, Ching-Chuan Liu, Pei-Jane Tsai, Ming T. Lin posted to streptococcus procaspase chang09pdf bax apoptosis 8 by paulschlesinger on 2009-11-24 01:15:01 as
	Phase transition kinetics of lipid bilayer membranes studied by time-resolved pressure perturbation calorimetry [My Copy] European Biophysics Journal by Martin Schiewek, Alfred Blume posted to transition schiew09pdf phase kinetics bilayer by paulschlesinger on 2009-11-24 01:06:36 as
	Influence of Surfactant Structure on the Contribution of Micelles to Ostwald Ripening in Oil-in-Water Emulsions [My Copy] Journal of Colloid and Interface Science (20 November 2009) by Suwimon Ariyaprakai, Stephanie R. Dungan posted to ripening ostwald micelle emulsions ariya09pdf by paulschlesinger on 2009-11-24 01:03:35 as
	Free energies of stable and metastable pores in lipid membranes under tension [My Copy] The Journal of Chemical Physics, Vol. 131, No. 20. (2009), 205101. by Wouter K. den Otter posted to tension stable pore metastable membrane denott09pdf by paulschlesinger on 2009-11-24 00:55:57 as
	Critical Casimir interaction of ellipsoidal colloids with a planar wall [My Copy] The Journal of Chemical Physics, Vol. 131, No. 20. (2009), 204902. by S. Kondrat, L. Harnau, S. Dietrich posted to wall kondra09pdf interaction colloid casimir by paulschlesinger on 2009-11-24 00:53:49 as
	Conjugate peak refinement: an algorithm for finding reaction paths and accurate transition states in systems with many degrees of freedom [My Copy] Chemical Physics Letters, Vol. 194, No. 3. (26 June 1992), pp. 252-261. by S. Fischer, M. Karplus posted to transition_path reaction_paths problems_fel_dof methods free-energy by Diego_Prada on 2009-11-23 17:38:17 as along with 1 person ckmyo
	Cis-Trans Imide Isomerization of the Proline Dipeptide [My Copy] Journal of the American Chemical Society, Vol. 116, No. 26. (1 December 1994), pp. 11931-11937. by Stefan Fischer, Roland L. Dunbrack, Martin Karplus posted to transition_path problems_fel_dof amino by Diego_Prada on 2009-11-23 17:09:55 as
	Simulation of activation free energies in molecular systems [My Copy] The Journal of Chemical Physics, Vol. 105, No. 5. (1996), pp. 1902-1921. by Eyal Neria, Stefan Fischer, Martin Karplus posted to transition_path problems_fel_dof force-fields dialanine alanine by Diego_Prada on 2009-11-23 16:30:50 as along with 1 person timg
	Mechanochemical Coupling in the Myosin Motor Domain. II. Analysis of Critical Residues [My Copy] PLoS Comput Biol, Vol. 3, No. 2. (16 February 2007), e23. by Haibo Yu, Liang Ma, Yang Yang, Qiang Cui posted to problems_fel_dof by Diego_Prada on 2009-11-23 15:52:46 as along with 1 person cactus
	Mechanochemical Coupling in the Myosin Motor Domain. I. Insights from Equilibrium Active-Site Simulations [My Copy] PLoS Comput Biol, Vol. 3, No. 2. (9 February 2007), e21. by Haibo Yu, Liang Ma, Yang Yang, Qiang Cui posted to problems_fel_dof by Diego_Prada on 2009-11-23 15:51:01 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	Titanium dioxide nanocomposites [My Copy] Nanotechnologies for Life Science (Nov 2009), pp. 1-49. by H. Arora, C. Doty, Y. Yuan, et al.J. Boyle, K. Petras, B. Rabatic, T. Paunesku, G. Woloschak posted to toxicity review nanotechnology by sobolevnrm on 2009-11-23 13:45:01 as
	Predicting Ligand Binding Affinity with Alchemical Free Energy Methods in a Polar Model Binding Site [My Copy] Journal of Molecular Biology (Sep 2009) by S. Boyce, D. Mobley, G. Rocklin, A. Graves, K. Dill, B. Shoichet posted to solvation protein-ligand-interactions free-energy by sobolevnrm on 2009-11-23 13:45:01 as
	SitesIdentify: a protein functional site prediction tool [My Copy] BMC Bioinformatics 2009 10:379, Vol. 10, No. 1. (Nov 2009) by T. Bray, P. Chan, S. Bougouffa, R. Greaves, A. J. Doig, J. Warwicker posted to structure bioinformatics by sobolevnrm on 2009-11-23 13:45:01 as
	Lipid droplet-organelle interactions; sharing the fats [My Copy] Biochim Biophys Acta, Vol. 1791, No. 6. (Jun 2009), pp. 441-7. by Samantha Murphy, Sally Martin, Robert G. Parton posted to signal-transduction review rab-gtpase rab-gtp-binding-proteins protein-transport organelles organelle-size organelle-interaction motility molecular-conformation microtubule membrane-fusion lipids lipid-metabolism lipid-droplet humans caveolae biomembranes animals adipocytes by sobolevnrm on 2009-11-23 13:45:01 as

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proteins	66
bibsonomy	37
coarse-graining	23
forces	23
md	20
active	19
surfactant	14
biomineralization	13
networks	13
biomechanics	12
unfolding	12
caco3	11
mechanobiology	11
polymer	10
polymers	10
protein	10
continuum	9
afm	8
elastic	8
cytoskeleton	7
flocking	7
folding	7
hydrodynamics	7
water	7
granular	6
instability	6
cell_adhesion	5
force_network	5
free_energy	5
simulation	5
stability	5
sugar	5
forcefields	4
friction	4
kinetics	4
lattice_boltzmann	4
ubiquitin	4
viscosity	4
biophysics	3
crystal	3
deformation	3
droplets	3
drops	3
experiment	3
flow	3
glycosylation	3
hydrophobicity	3
microfluidics	3
nacre	3
packing	3
spontaneous	3
swimmers	3
weighted	3
adhesion	2
allostery	2
bacteria	2
buckling	2
collapse	2
cyclotide	2
dynamics	2
energy_transfer	2
flexibility	2
fracture	2
imported	2
interfaces	2
ions	2
jamming	2
knot	2
normal_modes	2
numerical_solution	2
polarizable	2
review	2
rheology	2
self-assembly	2
viscoelastic	2
actin_filaments	1
bilayer	1
blood_clots	1
bonds	1
boundary_layers	1
branched	1
bubbles	1
budding	1
capillarity	1
channels	1
colloidal_particles	1
crack	1
dispersion	1
docking	1
elastic_network	1
electrokinetics	1
electrostatic_forces	1
fiber_bundle	1
fibrin	1
flow_visualisation	1
force_matching	1
functions	1
glasses	1
glassy	1
integral_equations	1
integrals	1
kinesin	1
knottin	1
mean-field	1
microtubule	1
microtubules	1
multiscale	1
nanotubes	1
nug2	1
patches	1
polyaspartate	1
porous_media	1
python	1
qm	1
reynolds_number	1
rna	1
shear_flow	1
slip	1
solvent_effects	1
speed_of_sound	1
spheres	1
stokes_law	1
stresses	1
structure	1
teaching	1
thermal_activation	1
titin	1
transport	1
two-phase_flow	1
velocity_distribution	1
viscous_flow	1
wavelet	1
wlc	1

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