eldan's library [at least 200 articles]

Recent papers added to eldan's ordered by to_read.

	Alternative routes and mutational robustness in complex regulatory networks [My Copy] Biosystems, Vol. 88, No. 1-2. (March 2007), pp. 163-172. by Andreas Wagner, Jeremiah Wright posted to genetic_regulatory_networks yeast by eldan on 2007-03-28 04:01:50 as along with 2 people kaarsinogen wnpx
	Evolving fuzzy rules to model gene expression. [My Copy] Biosystems (30 April 2006) by Ricardo Linden, Amit Bhaya posted to arabidopsis evolution genetic_regulatory_networks modelling by eldan on 2007-03-28 03:58:45 as along with 4 people gespim dps guhjy bagush
	Potential Energy Landscape and Robustness of A Gene Regulatory Network: Toggle Switch [My Copy] PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e60.eor. by Keun-Young Kim, Jin Wang posted to genetic_regulatory_networks robustness by eldan on 2007-02-17 20:16:32 as
	Dynamic simulations on the Arachidonic Acid Metabolic Network [My Copy] PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e55.eor. by Kun Yang, Wenzhe Ma, Huanhuan Liang, Qi Ouyang, Chao Tang, Luhua Lai posted to biology genetic_regulatory_networks medicine by eldan on 2007-02-17 03:31:25 as
	Intervention in a family of Boolean networks. [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 226-232. by A. Choudhary, A. Datta, M. L. Bittner, E. R. Dougherty posted to genetic_regulatory_networks boolean_networks by eldan on 2007-02-06 01:07:25 as along with 1 person wnpx
	Intervention in context-sensitive probabilistic Boolean networks. [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1211-1218. by R. Pal, A. Datta, M. L. Bittner, E. R. Dougherty posted to genetic_regulatory_networks boolean_networks by eldan on 2007-02-06 01:05:33 as along with 1 person wnpx
	An empirical Bayes approach to inferring large-scale gene association networks. [My Copy] Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 754-764. by J. Schäfer, K. Strimmer posted to genetic_regulatory_networks by eldan on 2007-02-06 00:59:40 as along with 5 people and 1 group gangli wnpx Ao_Li2007 StatAnika tmmurali tulip
	Gene regulatory networks and the evolution of animal body plans. [My Copy] Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800. by E. H. Davidson, D. H. Erwin posted to genetic_regulatory_networks evolution development by eldan on 2007-02-03 00:57:01 as along with 19 people and 5 groups dlobo anphony qwermish sWorgan Lauren_Jones bayesian dpollard xico dchughes brixtonmc Liusha margaritis josepe cjeans sujaikumar Garamonfok jtomasch Ema natstreet GEB EisenLab WetBiology G4ID Genetics-of-Gambling
	Neutral evolution of mutational robustness. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 17. (17 August 1999), pp. 9716-9720. by E. van Nimwegen, J. P. Crutchfield, M. Huynen posted to neutral_networks modelling genetics evolution by eldan on 2007-01-26 03:30:58 as along with 5 people and 1 group operon alexisgallagher gokhan grisogono Spaans DSTO-CAS
	A gene network model accounting for development and evolution of mammalian teeth [My Copy] PNAS, Vol. 99, No. 12. (11 June 2002), pp. 8116-8120. by Isaac Salazar-Ciudad, Jukka Jernvall posted to modelling evolution development biology by eldan on 2007-01-26 03:27:39 as along with 1 person mjoach
	Evo-devo and constraints on selection [My Copy] Trends in Ecology & Evolution In Twenty years of TREE - part 2, Vol. 21, No. 7. (July 2006), pp. 362-368. by Paul M. Brakefield posted to development biology by eldan on 2007-01-26 03:19:07 as along with 2 people and 3 groups dchughes cmm FAB-lab G4ID Genetics-of-Gambling
	Qualitative simulation of genetic regulatory networks using piecewise-linear models [My Copy] Bulletin of Mathematical Biology, Vol. V66, No. 2. (17 March 2004), pp. 301-340. by Hidde de Jong, Jean-Luc Gouzé, Cã©line Hernandez, Michel Page, Tewfik Sari, Johannes Geiselmann posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-25 02:51:05 as
	Complexity and Robustness [My Copy] Proceedings of the National Academy of Sciences, Vol. 99, No. suppl. 1. (18 February 2002), pp. 2838-2545. by J. M. Carlson, John Doyle posted to information_theory by eldan on 2007-01-25 02:48:48 as
	Boolean formalization of genetic control circuits [My Copy] Journal of Theoretical Biology, Vol. 42, No. 3. (December 1973), pp. 563-585. by Rene Thomas posted to modelling genetic_regulatory_networks boolean_networks by eldan on 2007-01-25 02:45:09 as
	Systems biology. Life's complexity pyramid. [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 763-764. by Z. N. Oltvai, A. L. Barabási posted to systems_biology network_theory biology by eldan on 2007-01-25 02:34:15 as along with 11 people and 6 groups tomhebbron Scis0000002 Diego_Prada agomez yas wnpx sameetmehta jwdietrich mattjb franklin Ema MathBio Cybernetics ComplexAdaptiveSystems DSTO-CAS Biomedical_Cybernetics AQUA-FONTIS-Study
	On the Complexity of Finite Sequences [My Copy] Information Theory, IEEE Transactions on, Vol. 22, No. 1. (1976), pp. 75-81. by A. Lempel, J. Ziv posted to methodology information_theory by eldan on 2007-01-25 02:30:26 as along with 2 people and 1 group mresearcher jack Vision
	Metabolic stability and epigenesis in randomly constructed genetic nets [My Copy] Journal of Theoretical Biology, Vol. 22, No. 3. (March 1969), pp. 437-467. by S. A. Kauffman posted to genetic_regulatory_networks boolean_networks by eldan on 2007-01-25 02:25:30 as along with 5 people tomhebbron kinop verdicchio wnpx gcalda
	Inferring genetic regulatory logic from expression data [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2706-2713. by Svetlana Bulashevska, Roland Eils posted to genetic_regulatory_networks by eldan on 2007-01-19 04:06:06 as along with 1 person wnpx
	Toward computational systems biology. [My Copy] Cell Biochem Biophys, Vol. 40, No. 2. (2004), pp. 167-184. by L. You posted to systems_biology modelling methodology biology by eldan on 2007-01-18 23:58:04 as along with 3 people Scis0000002 wnpx Doug
	Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks. [My Copy] Bioinformatics, Vol. 18, No. 2. (February 2002), pp. 261-274. by I. Shmulevich, E. R. Dougherty, S. Kim, W. Zhang posted to methodology genetic_regulatory_networks boolean_networks by eldan on 2007-01-18 22:25:27 as along with 3 people and 1 group wangbo camster ddahlem dbk-lab
	A Simple Modularity Measure for Search Spaces based on Information Theory [My Copy] In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (1 August 2006), pp. 344-349. by Peter Dauscher, Daniel Polani, Richard A. Watson edited by Luis M. Rocha, Larry S. Yaeger, Mark A. Bedau, Dario Floreano, Robert L. Goldstone, Alessandro Vespignani posted to information_theory methodology modularity by eldan on 2006-06-20 01:39:54 as along with 1 person nathanielvirgo
	Sensorimotor Information flow in Genetic Regulatory Network driven control systems [My Copy] In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (1 August 2006), pp. 351-357. by Tom Quick, Chrystopher Nehaniv, Kerstin Dautenhahn, Graham Roberts edited by Luis M. Rocha, Larry S. Yaeger, Mark A. Bedau, Dario Floreano, Robert L. Goldstone, Alessandro Vespignani posted to sensorimotor information_theory genetic_regulatory_networks evolutionary_robotics by eldan on 2006-06-16 02:06:10 as
	Deconstructing Memory in Drosophila [My Copy] Current Biology, Vol. 15, No. 17. (6 September 2005), pp. R700-R713. by Carla Margulies, Tim Tully, Josh Dubnau posted to biology drosophila learning memory by eldan on 2006-05-25 03:47:07 as along with 3 people and 1 group gurprit_raunu ckehl dandright numberones
	The dynamics of adaptive behavior: A research program [My Copy] Robotics and Autonomous Systems, Vol. 20 (1997), pp. 257-289. by R. D. Beer posted to dynamical_systems by eldan on 2006-05-25 02:47:38 as
	The evolution of evolution [My Copy] Heredity, Vol. 94 (2005), pp. 1-2. by G. Bell posted to evolution evolvability by eldan on 2006-01-05 21:04:36 as
	A Comprehensive Overview of the Applications of Artificial Life [My Copy] Artificial Life, Vol. 12, No. 1. (2006), pp. 153-182. by Kyung-Joong Kim, Sung-Bae Cho posted to alife jobs by eldan on 2006-01-05 01:07:05 as along with 2 people redfeathers mrosenki
	Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems [My Copy] (01 December 2001) by Peter Dayan, L. F. Abbott posted to biology learning neuro by eldan on 2005-06-21 17:12:33 as along with 11 people flips Scis0000002 tomsharp sbarthelme bayesian dwf awooga rwilliamson bmcwilliams napvasconcelos robotact
	Cellular Basis of Behavior [My Copy] by Eric R. Kandel posted to biology learning by eldan on 2005-06-21 17:06:11 as along with 1 person edizquierdo
	Learning and Evolution [My Copy] Autonomous Robots, Vol. 7, No. 1. (July 1999), pp. 89-113. by Stefano Nolfi, Dario Floreano posted to evolution learning by eldan on 2005-06-17 00:26:08 as
	Environment and Behavior Influence the Complexity of Evolved Neural Networks [My Copy] Adaptive Behavior, Vol. 12, No. 1. (2004), pp. 5-20. by Anil K. Seth, Gerald M. Edelman posted to evolution neuro by eldan on 2005-06-16 07:41:42 as
	Tracking the Trajectories of Evolution [My Copy] Artificial Life, Vol. 10, No. 4., 397. by Mikhail S. Burtsev posted to evolution by eldan on 2005-06-15 18:24:48 as
	Flies, genes and learning [My Copy] Annual Review of Neuroscience, Vol. 24 (March 2001), pp. 1283-1309. by Scott Waddell, William G. Quinn posted to biology evolution genetics learning by eldan on 2005-06-15 06:11:49 as
	The Biology of Learning (Life Sciences Research Reports, No 29) [My Copy] (01 December 1984) by P. Marler posted to biology learning by eldan on 2005-06-15 06:00:44 as
	Evolving an action-based mechanism for the interpretation of geometrical clues during robot navigation [My Copy] Connection Science, Vol. 16, No. 4. (December 2004), pp. 267-281. by Orazio Miglino, Richard Walker posted to evolutionary_robotics learning neural_control by eldan on 2005-05-25 04:37:44 as
	Design of genetic networks with specified functions by evolution in silico. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 2. (13 January 2004), pp. 580-585. by P. François, V. Hakim posted to modelling genetic_regulatory_networks evolvability by eldan on 2007-01-29 22:59:41 as along with 7 people Borelli rouault rklancer monod dbikard discreteonyxorb mjoach
	Evolving complex dynamics in electronic models of genetic networks. [My Copy] Chaos, Vol. 14, No. 3. (September 2004), pp. 707-715. by J. Mason, P. S. Linsay, J. J. Collins, L. Glass posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-29 22:55:31 as along with 2 people and 1 group dlobo dbikard GEB
	The interpretation of morphogen gradients [My Copy] Development, Vol. 133, No. 3. (1 February 2006), pp. 385-394. by Hilary L. Ashe, James Briscoe posted to biology by eldan on 2007-01-26 03:11:10 as along with 3 people and 1 group brant emilyhare shh EisenLab
	A natural class of robust networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 15. (22 July 2003), pp. 8710-8714. by M. Aldana, P. Cluzel posted to network_theory genetic_regulatory_networks by eldan on 2007-01-25 02:40:37 as along with 4 people and 4 groups kinop jmenche jwdietrich timflutre MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, François Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, Benjamin D. Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to yeast genetic_regulatory_networks by eldan on 2007-01-25 02:39:02 as along with 1 person wnpx
	Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Network [My Copy] Physical Review Letters, Vol. 94, No. 12. (2005) by Sui Huang, Gabriel Eichler, Yaneer B. Yam, Donald E. Ingber posted to modelling genetic_regulatory_networks by eldan on 2007-01-25 02:29:02 as along with 5 people joseph_x_zhou akraemer wnpx mikaelhuss john_ardelius
	A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles. [My Copy] Plant Cell, Vol. 16, No. 11. (November 2004), pp. 2923-2939. by C. Espinosa-Soto, P. Padilla-Longoria, E. R. Alvarez-Buylla posted to modelling genetic_regulatory_networks arabidopsis by eldan on 2007-01-25 02:21:16 as along with 3 people and 1 group josedavid rklancer Happybene GEB
	A formal language for computational systems biology. [My Copy] OMICS, Vol. 8, No. 4. (2004), pp. 370-380. by D. D. Errampalli, C. Priami, P. Quaglia posted to systems_biology methodology biology by eldan on 2007-01-23 00:29:26 as along with 3 people wnpx Doug josepe
	Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles. [My Copy] Pac Symp Biocomput (2006), pp. 559-571. by S. Imoto, Y. Tamada, H. Araki, et al.K. Yasuda, C. G. Print, S. D. Charnock-Jones, D. Sanders, C. J. Savoie, K. Tashiro, S. Kuhara, S. Miyano posted to genetic_regulatory_networks by eldan on 2007-01-23 00:28:47 as along with 2 people tardigrade wnpx
	Blond, tall, with honey-colored eyes: Jewish ownership of slaves in the Ottoman Empire [My Copy] Jewish History, Vol. 20, No. 3-4. (December 2006), pp. 315-332. by Yaron Ben-Naeh posted to off-topic history by eldan on 2007-01-23 00:25:06 as
	Modeling and Simulation of Genetic Regulatory Systems: A Literature Review [My Copy] Journal of Computational Biology, Vol. 9, No. 1. (January 2002), pp. 67-103. by H. de Jong posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-19 00:01:10 as along with 25 people and 6 groups qluo antonkratz reyez tlse65 wangbo dlobo jago behindtherabbit cswinburne ggallone softsimu tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl smac GEB Jarman Lab VirtualPlants Plantandetc compneur
	The nature of systems biology. [My Copy] Trends Microbiol (17 November 2006) by Frank J J. Bruggeman, Hans V V. Westerhoff posted to systems_biology meta biology by eldan on 2007-01-18 21:40:13 as along with 12 people and 5 groups babakap alorena jwm jmeppley wnpx rabu aswin kengg dolhuis livingthingdan mkrajnak ptpases Radiation_Damage Stressosome SNE livingthing Plantandetc
	Topology and Robustness in the Drosophila Segment Polarity Network [My Copy] PLoS Biology, Vol. 2, No. 6. (1 June 2004), e123. by Nicholas T. Ingolia posted to genetic_regulatory_networks drosophila boolean_networks by eldan on 2007-01-17 23:29:07 as
	Learning from others' mistakes: a paradox revisited [My Copy] Anim Behav, Vol. 55, No. 1. (January 1998), pp. 79-85. by J. J. Templeton posted to learning by eldan on 2006-09-21 20:34:49 as along with 1 person enesarv
	Memory processes in classical conditioning. [My Copy] Neurosci Biobehav Rev, Vol. 28, No. 7. (November 2004), pp. 663-674. by M. E. Bouton, E. W. Moody posted to learning memory by eldan on 2006-07-18 22:43:37 as along with 1 person edizquierdo
	PS I want all the rights [My Copy] Nature, Vol. 442, No. 7099. (12 July 2006), pp. 118-119. by Emma Marris posted to meta off-topic politics by eldan on 2006-07-17 20:33:32 as