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eldan's modelling [36 articles]

Recent papers added to eldan's library classified by the tag modelling. You can also see everyone's modelling.
  • Evolving fuzzy rules to model gene expression.
    Biosystems (30 April 2006)
    by Ricardo Linden, Amit Bhaya
    posted to arabidopsis evolution genetic_regulatory_networks modelling by eldan on 2007-03-28 03:58:45 as ***** along with 4 people bagush jyuh gespim dps
  • notes SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451.
    by Stefan Bornholdt
    posted to systems_biology modelling genetic_regulatory_networks by eldan on 2007-01-30 23:25:35 as read along with 6 people and 1 group snuppepuppan jmeppley balajis wnpx biosv fishtank Bioinformatics
  • Evolution of repressilators using a biologically-motivated model of gene expression
    (1 August 2006), pp. 22-27.
    by Barry Drennan, Randall D Beer
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to modelling genetic_regulatory_networks evolution development by eldan on 2007-01-30 00:28:42 as read
  • Design of genetic networks with specified functions by evolution in silico.
    Proc Natl Acad Sci U S A, Vol. 101, No. 2. (13 January 2004), pp. 580-585.
    by P François, V Hakim
    posted to modelling genetic_regulatory_networks evolvability by eldan on 2007-01-29 22:59:41 as **** along with 5 people mjoach rklancer monod dbikard discreteonyxorb
  • notes Evolving complex dynamics in electronic models of genetic networks.
    Chaos, Vol. 14, No. 3. (September 2004), pp. 707-715.
    by J Mason, PS Linsay, JJ Collins, L Glass
    posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-29 22:55:31 as **** along with 1 person dbikard
  • Evolving Biological Clocks using Genetic Regulatory Networks
    (1 August 2006), pp. 15-21.
    by Johannes F Knabe, Chrystpoher L Nehaniv, Maria J Schilstra, Tom Quick
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to modelling genetic_regulatory_networks evolution alife by eldan on 2007-01-26 22:43:34 as read along with 2 people jknabe darkmaul
  • Neutral evolution of mutational robustness.
    Proc Natl Acad Sci U S A, Vol. 96, No. 17. (17 August 1999), pp. 9716-9720.
    by E van Nimwegen, JP Crutchfield, M Huynen
    posted to neutral_networks modelling genetics evolution by eldan on 2007-01-26 03:30:58 as ***** along with 5 people and 1 group operon alexisgallagher gokhan grisogono Spaans DSTO-CAS
  • notes A gene network model accounting for development and evolution of mammalian teeth
    PNAS, Vol. 99, No. 12. (11 June 2002), pp. 8116-8120.
    by Isaac Salazar-Ciudad, Jukka Jernvall
    posted to modelling evolution development biology by eldan on 2007-01-26 03:27:39 as *****
  • notes Qualitative simulation of genetic regulatory networks using piecewise-linear models
    Bulletin of Mathematical Biology, Vol. V66, No. 2. (17 March 2004), pp. 301-340.
    by Hidde de Jong, Jean-Luc Gouzé, Cã©line Hernandez, Michel Page, Tewfik Sari, Johannes Geiselmann
    posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-25 02:51:05 as *****
  • Boolean formalization of genetic control circuits
    Journal of Theoretical Biology, Vol. 42, No. 3. (December 1973), pp. 563-585.
    by Rene Thomas
    posted to modelling genetic_regulatory_networks boolean_networks by eldan on 2007-01-25 02:45:09 as *****
  • Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Network
    Physical Review Letters, Vol. 94, No. 12. (2005)
    by Sui Huang, Gabriel Eichler, Yaneer B Yam, Donald E Ingber
    posted to modelling genetic_regulatory_networks by eldan on 2007-01-25 02:29:02 as **** along with 3 people wnpx mikaelhuss john_ardelius
  • A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles.
    Plant Cell, Vol. 16, No. 11. (November 2004), pp. 2923-2939.
    by C Espinosa-Soto, P Padilla-Longoria, ER Alvarez-Buylla
    posted to modelling genetic_regulatory_networks arabidopsis by eldan on 2007-01-25 02:21:16 as **** along with 2 people rklancer Happybene
  • Toward large-scale modeling of the microbial cell for computer simulation.
    J Biotechnol, Vol. 113, No. 1-3. (30 September 2004), pp. 281-294.
    by N Ishii, M Robert, Y Nakayama, A Kanai, M Tomita
    posted to modelling methodology biology by eldan on 2007-01-23 00:30:24 as *** along with 7 people and 3 groups wnpx Doug cottrell livingthingdan josepe fishtank roland_ewald livingthing dIEMoSIRIS MoSi-Rostock
  • notes Modeling and simulation of genetic regulatory systems: a literature review.
    J Comput Biol, Vol. 9, No. 1. (2002), pp. 67-103.
    by H de Jong
    posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-19 00:01:10 as **** along with 14 people and 3 groups phoenixzxl tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt VirtualPlants Plantandetc compneur
  • Toward computational systems biology.
    Cell Biochem Biophys, Vol. 40, No. 2. (2004), pp. 167-184.
    by L You
    posted to systems_biology modelling methodology biology by eldan on 2007-01-18 23:58:04 as ***** along with 2 people wnpx Doug
  • The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster
    Journal of Theoretical Biology, Vol. 223 (7 July 2003), pp. 1-18.
    by Réka Albert, Hans G Othmer
    posted to modelling graph_theory genetic_regulatory_networks drosophila boolean_networks by eldan on 2007-01-18 01:16:23 as read
  • Computational modelling, explicit mathematical treatments, and scientific explanation
    (1 August 2006), pp. 520-526.
    by John Bryden, Jason Noble
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to meta methodology modelling by eldan on 2006-06-20 02:00:38 as **** along with 1 person wnpx
  • ALife Models as Epistemic Artefacts
    (1 August 2006), pp. 513-519.
    by Xabier Barandiaran, Alvaro Moreno
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to methodology modelling pocs by eldan on 2006-06-20 01:53:04 as **** along with 1 person and 1 group ksk ikeg-lab
  • Emergence of Cooperation in Heterogeneous Structured Populations
    (1 August 2006), pp. 432-437.
    by FC Santos, JM Pacheco, Tom Lenaerts
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to modelling by eldan on 2006-06-20 01:50:46 as **
  • Relevant Information in Optimized Persistence vs. Progeny Strategies
    (1 August 2006), pp. 337-343.
    by Daniel Polani, Chrystopher L Nehaniv, Thomas Martinetz, Jan T Kim
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to evolution information_theory modelling by eldan on 2006-06-20 01:37:22 as ***
  • Evolution of Neural Structure and Complexity in a Computational Ecology
    (1 August 2006), pp. 330-336.
    by Larry S Yaeger, Olaf Sporns
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to information_theory modelling by eldan on 2006-06-16 02:24:44 as ****
  • An Evolutionary Model of Genotype Editing
    (1 August 2006), pp. 105-111.
    by Luis M Rocha, Ana Maguitman, Chien-Feng Huang, Jasleen Kaur, Sheetal Narayanan
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to alife evolution genetics modelling by eldan on 2006-06-16 02:15:19 as **
  • The Role of Programmed Death in the Persistence of Life
    (1 August 2006), pp. 158-164.
    by Gordon C Osbourn, Christina E Warrender, Ann M Bouchard
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to evolution modelling by eldan on 2006-06-16 02:00:17 as **
  • Investigating Ontogenetic Space with Developmental Cell Lineages
    (1 August 2006), pp. 56-62.
    by Nicholas Geard, Janet Wiles
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to biology development modelling by eldan on 2006-06-16 01:57:21 as ***
  • Tracking the Trajectories of Evolution
    Artificial Life, Vol. 10, No. 4. (Fall 2004), pp. 397-411.
    by Mikhail S Burtsev
    posted to evolution methodology modelling visualisation by eldan on 2006-06-13 02:24:37 as ****
  • notes Can robots make good models of biological behaviour?
    Behavioral & Brain Sciences, Vol. 24, No. 6. (December 2001), pp. 1033-1050.
    by Barbara Webb
    posted to conceptual methodology modelling by eldan on 2006-06-12 19:38:03 as ****
  • Sexual reproduction selects for robustness and negative epistasis in artificial gene networks
    Nature, Vol. 440, No. 7080., pp. 87-90.
    by Ricardo BR Azevedo, Rolf Lohaus, Suraj Srinivasan, Kristen K Dang, Christina L Burch
    posted to evolution modelling by eldan on 2006-03-21 21:26:39 as **** along with 2 people and 1 group mjoach cmm FAB-lab
  • The importance of selection rate in the evolution of cooperation
    (28 Dec 2005)
    by Carlos P Roca, Jose A Cuesta, Angel Sanchez
    posted to evolution modelling by eldan on 2006-01-05 21:00:17 as ***
  • Resilient Individuals Improve Evolutionary Search
    Artificial Life, Vol. 12, No. 1. (2006), pp. 17-34.
    by Terence Soule
    posted to evolution modelling by eldan on 2006-01-05 20:40:14 as **** along with 1 person redfeathers
  • notes A Co-evolutionary Epidemiological Model for Artificial Life and Death
    (September 2005)
    by Alan Dorin
    edited by Mathieu Capcarrere, Alex A Freitas, Peter J Bentley, Colin G Johnson, Jon Timmis
    posted to evolution modelling by eldan on 2005-09-20 20:39:26 as ****
  • notes On the Unit of Selection in Sexual Populations
    (September 2005)
    by Richard A Watson
    edited by Mathieu Capcarrere, Alex A Freitas, Peter J Bentley, Colin G Johnson, Jon Timmis
    posted to biology evolution modelling by eldan on 2005-09-20 20:36:40 as ****
  • notes A Fitness-Landscape for the Evolution of Uptake Signal Sequences on Bacterial DNA
    (September 2005), pp. 845-853.
    by Dominique Chu, Jonathan Rowe
    edited by Mathieu Capcarrere, Alex A Freitas, Peter J Bentley, Colin G Johnson, Jon Timmis
    posted to biology evolution modelling by eldan on 2005-09-20 20:34:32 as ***
  • notes The Genetic Coding Style of Digital Organisms
    (September 2005), pp. 854-863.
    by Philip Gerlee, Torbjörn Lundh
    edited by Mathieu Capcarrere, Alex A Freitas, Peter J Bentley, Colin G Johnson, Jon Timmis
    posted to evolution genetics modelling by eldan on 2005-09-20 20:30:56 as ***
  • notes Density-Dependent Demographic Variation Determines Extinction Rate of Experimental Populations
    PLoS Biology, Vol. 3, No. 7. (July 2005), e222.
    by John M Drake
    posted to biology modelling by eldan on 2005-08-12 00:28:51 as read
  • Computational Ecology: From the Complex to the Simple and Back
    PLoS Computational Biology, Vol. 1, No. 2. (29 July 2005), e18.
    by Mercedes Pascual
    posted to biology modelling by eldan on 2005-08-11 19:10:41 as ***
  • A unified model for perceptual learning
    Trends in Cognitive Sciences, Vol. 9, No. 7. (July 2005), pp. 329-334.
    by Aarona Seitz, Takeo Watanabe
    posted to learning modelling perception by eldan on 2005-08-11 04:23:08 as ****
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