ellarond's library 56 articles Export

	Shaping specificity in signaling networks [My Copy] Nat Genet, Vol. 39, No. 3. (01 March 2007), pp. 286-287. by Reka Albert, Zoltan N. Oltvai posted to be169 by ellarond on 2009-11-06 23:44:45 as along with 2 people and 1 group ccots arne dIEMoSIRIS
	Control of MAPK Specificity by Feedback Phosphorylation of Shared Adaptor Protein Ste50 [My Copy] Journal of Biological Chemistry, Vol. 283, No. 49. (5 December 2008), pp. 33798-33802. by Nan Hao, Yaxue Zeng, Timothy C. Elston, Henrik G. Dohlman posted to be169 by ellarond on 2009-11-06 23:41:09 as
	How Saccharomyces Responds to Nutrients [My Copy] Annual Review of Genetics, Vol. 42, No. 1. (27 February 2008), pp. 27-81. by Shadia Zaman, Soyeon I. Lippman, Xin Zhao, James R. Broach posted to be169 by ellarond on 2009-11-06 23:37:39 as along with 1 person MarcJungbluth
	How can yeast cells decide between three activated MAP kinase pathways? A model approach [My Copy] Journal of Theoretical Biology, Vol. 257, No. 4. (21 April 2009), pp. 578-587. by Ludger Rensing, Peter Ruoff posted to be169 by ellarond on 2009-11-06 23:35:36 as along with 1 person carlosjavierna
	Mechanisms and Constraints on Yeast MAPK Signaling Specificity [My Copy] Biophysical Journal, Vol. 96, No. 12. (17 June 2009), pp. 4755-4763. by Bo Hu, Wouter-Jan Rappel, Herbert Levine posted to be169 by ellarond on 2009-11-06 23:30:16 as
	A positive-feedback-based bistable \|[lsquo]\|memory module\|[rsquo]\| that governs a cell fate decision [My Copy] Nature, Vol. 426, No. 6965. (27 November 2003), pp. 460-465. by Wen Xiong, James E. Ferrell posted to be169 by ellarond on 2009-11-06 02:07:24 as along with 5 people mmcclean rklancer holan margaritis jbchang
	The Biochemical Basis of an All-or-None Cell Fate Switch in Xenopus Oocytes [My Copy] Science, Vol. 280, No. 5365. (8 May 1998), pp. 895-898. by James E. Ferrell, Eric M. Machleder posted to be169 by ellarond on 2009-11-06 02:05:07 as along with 5 people mmcclean reidw rklancer laurabailey jiyu
	E-cadherin-mediated adhesion inhibits ligand-dependent activation of diverse receptor tyrosine kinases [My Copy] The EMBO Journal, Vol. 23, No. 8. (01 April 2004), pp. 1739-1784. by Xiaolan Qian, Tatiana Karpova, Allan M. Sheppard, James McNally, Douglas R. Lowy posted to signalling rotation1 bioengineering by ellarond on 2009-10-17 02:52:50 as
	Quantitative Analysis of Developing Tissues [My Copy] AIChE Journal, Vol. 51, No. 5. (2005), pp. 1312-1318. by Stanislav Y. Shvartsman posted to signalling rotation1 bioengineering by ellarond on 2009-10-17 00:17:56 as
	Density-Dependent Inhibition of Growth Involves Prevention of EGF Receptor Activation by E-Cadherin-Mediated Cell–Cell Adhesion [My Copy] Experimental Cell Research, Vol. 226, No. 1. (10 July 1996), pp. 214-222. by K. Takahashi posted to signalling rotation1 by ellarond on 2009-10-16 02:29:18 as
	Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors [My Copy] Nature Biotechnology, Vol. 20, No. 4. (01 April 2002), pp. 370-375. by Birgit Schoeberl, Claudia Eichler-Jonsson, Ernst D. Gilles, Gertraud Muller posted to signalling rotation1 by ellarond on 2009-10-16 02:27:35 as along with 6 people dkoveal thomaskelder tuck sujaikumar lukaswindhager renatomilani
	From pathway to population - a multiscale model of juxtacrine EGFR-MAPK signalling [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 102. by D. C. Walker, N. T. Georgopoulos, J. Southgate posted to signalling rotation1 by ellarond on 2009-10-16 02:22:48 as
	Autoregulation of E-cadherin expression by cadherin-cadherin interactions: the roles of beta-catenin signaling, Slug, and MAPK [My Copy] J. Cell Biol., Vol. 163, No. 4. (24 November 2003), pp. 847-857. by Maralice Conacci-Sorrell, Inbal Simcha, Tamar Ben-Yedidia, Janna Blechman, Pierre Savagner, Avri Ben-Ze'ev posted to bioengineering systems-biology signalling rotation1 by ellarond on 2009-10-14 08:51:56 as along with 1 person guhjy
	The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 3. (22 January 2008), pp. 950-954. by Aviva Presser, Michael B. Elowitz, Manolis Kellis, Roy Kishony posted to systems-biology pleasure by ellarond on 2009-09-24 23:07:56 as along with 10 people carlk saket leemond31 robfsouza loukialili pradiptaray cjeans zwang roys phoenixzxl
	Frequency-modulated nuclear localization bursts coordinate gene regulation. [My Copy] Nature, Vol. 455, No. 7212. (25 September 2008), pp. 485-490. by Long Cai, Chiraj K. Dalal, Michael B. Elowitz posted to systems-biology pleasure by ellarond on 2009-09-24 22:59:44 as along with 8 people and 1 group bertelsen siebert dpollard erel10 inesdesantiago raik caseybrown jjray RockmanLab
	Regulatory activity revealed by dynamic correlations in gene expression noise [My Copy] Nature Genetics, Vol. 40, No. 12. (23 November 2008), pp. 1493-1498. by Mary J. Dunlop, Robert S. Cox, Joseph H. Levine, Richard M. Murray, Michael B. Elowitz posted to systems-biology pleasure by ellarond on 2009-09-24 22:58:18 as along with 5 people balicea jbhiatt erel10 balabu jjray
	Using movies to analyse gene circuit dynamics in single cells [My Copy] Nat Rev Micro, Vol. 7, No. 5. (01 May 2009), pp. 383-392. by James C. W. Locke, Michael B. Elowitz posted to systems-biology pleasure by ellarond on 2009-09-24 22:55:51 as along with 6 people pkm boko4ikameto abhishek_tiwari roys stasaki dswan
	Partial penetrance facilitates developmental evolution in bacteria [My Copy] Nature, Vol. 460, No. 7254. (05 July 2009), pp. 510-514. by Avigdor Eldar, Vasant K. Chary, Panagiotis Xenopoulos, et al.Michelle E. Fontes, Oliver C. Loson, Jonathan Dworkin, Patrick J. Piggot, Michael B. Elowitz posted to systems-biology pleasure by ellarond on 2009-09-24 22:44:11 as along with 8 people and 1 group bpcusack psique absterga biomcgary maren phoenixzxl jbhiatt jjray Journal picks
	An autonomous polymerization motor powered by DNA hybridization. [My Copy] Nature nanotechnology, Vol. 2, No. 8. (August 2007), pp. 490-494. by Suvir Venkataraman, Robert M. Dirks, Paul W. Rothemund, Erik Winfree, Niles A. Pierce posted to pleasure bioengineering by ellarond on 2009-09-21 06:49:36 as along with 3 people jbhiatt kevinchannon dna
	Programming biomolecular self-assembly pathways. [My Copy] Nature, Vol. 451, No. 7176. (17 January 2008), pp. 318-322. by Peng Yin, Harry M. Choi, Colby R. Calvert, Niles A. Pierce posted to pleasure bioengineering by ellarond on 2009-09-21 06:46:25 as along with 4 people tmmurali cjeans cactus austin
	Beyond Mfold: recent advances in RNA bioinformatics. [My Copy] Journal of biotechnology, Vol. 124, No. 1. (25 June 2006), pp. 41-55. by Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich posted to folding by ellarond on 2009-09-21 06:38:00 as along with 20 people and 4 groups tonamswish heliopais daforerog danaiancu rb_india GustavoLacerda hrogers marcius eckart_bindewald tardigrade andersbj arcticrasta mtagaya condon Hosna Eonwe cthachuk stajich physics reyez microRNA beta BioinfoCIPF SGU-CIPF
	Experimentally Derived Nearest-Neighbor Parameters for the Stability of RNA Three- and Four-Way Multibranch Loops† [My Copy] Biochemistry, Vol. 41, No. 3. (1 January 2002), pp. 869-880. by David H. Mathews, Douglas H. Turner posted to thesis by ellarond on 2009-07-12 22:47:26 as
	Geometric nomenclature and classification of RNA base pairs. [My Copy] RNA, Vol. 7, No. 4. (April 2001), pp. 499-512. by N. B. Leontis, E. Westhof posted to thesis by ellarond on 2009-07-12 22:27:41 as along with 2 people and 2 groups marcius jarasch BioinfoCIPF SGU-CIPF
	Intramolecular Reaction in Polycondensations. I. The Theory of Linear Systems [My Copy] The Journal of Chemical Physics, Vol. 18, No. 12. (1950), pp. 1600-1606. by Homer Jacobson, Walter H. Stockmayer posted to thesis by ellarond on 2009-07-12 21:40:57 as
	The tmRDB and SRPDB resources. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006), pp. D163-168. by Ebbe Sloth S. Andersen, Magnus Alm A. Rosenblad, Niels Larsen, et al.Jesper Cairo C. Westergaard, Jody Burks, Iwona K. Wower, Jacek Wower, Jan Gorodkin, Tore Samuelsson, Christian Zwieb posted to thesis by ellarond on 2009-07-10 16:51:36 as
	SRP-RNA sequence alignment and secondary structure [My Copy] Nucl. Acids Res., Vol. 19, No. 2. (25 January 1991), pp. 209-215. by Niels Larsen, Christian Zwieb posted to thesis by ellarond on 2009-07-07 18:35:48 as along with 2 people jarasch ThomasBecker
	The equilibrium partition function and base pair binding probabilities for RNA secondary structure. [My Copy] Biopolymers, Vol. 29, No. 6-7. (n 1990), pp. 1105-1119. by J. S. McCaskill posted to thesis by ellarond on 2009-07-07 17:05:51 as along with 9 people and 3 groups NicholasErho saunders rb_india evaf marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
	Efficient parameter estimation for RNA secondary structure prediction [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i19-28. by Mirela Andronescu, Anne Condon, Holger H. Hoos, David H. Mathews, Kevin P. Murphy posted to thesis by ellarond on 2009-07-07 16:18:06 as along with 1 person and 2 groups Hosna Bioinformatics beta
	Single-Strand Stacking Free Energy from DNA Beacon Kinetics [My Copy] Biophysical Journal, Vol. 84 (2003), pp. 3212-3217. by D. P. Aalberts, J. M. Parman, N. L. Goddard posted to thesis by ellarond on 2009-07-02 19:28:54 as
	RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (13 August 2008), 340. by Mirela Andronescu, Vera Bereg, Holger Hoos, Anne Condon posted to thesis by ellarond on 2009-07-02 19:26:12 as
	Rfam: annotating non-coding RNAs in complete genomes [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_1. (1 January 2005), pp. D121-124. by Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman posted to thesis by ellarond on 2009-07-02 19:25:36 as along with 4 people fishtank galka8_diploma antonkratz daforerog
	Thermodynamics of Three-Way Multibranch Loops in RNA† [My Copy] Biochemistry, Vol. 40, No. 23. (1 June 2001), pp. 6971-6981. by Joshua M. Diamond, Douglas H. Turner, David H. Mathews posted to thesis by ellarond on 2009-07-02 19:24:34 as
	Asymmetry in RNA pseudoknots: observation and theory [My Copy] Nucl. Acids Res., Vol. 33, No. 7. (14 April 2005), pp. 2210-2214. by Daniel P. Aalberts, Nathan O. Hodas posted to thesis by ellarond on 2009-07-02 19:22:28 as along with 2 people and 3 groups marcius condon beta BioinfoCIPF SGU-CIPF
	Spatial configurations of polynucleotide chains. I. Steric interactions in polyribonucleotides: a virtual bond model. [My Copy] Biopolymers, Vol. 11, No. 1. (January 1972), pp. 1-23. by W. K. Olson, P. J. Flory posted to thesis by ellarond on 2009-07-02 16:58:11 as
	Configurational statistics of polynucleotide chains. A single virtual bond treatment. [My Copy] Macromolecules, Vol. 8, No. 3. (n 1975), pp. 272-275. by W. K. Olson posted to thesis by ellarond on 2009-07-02 16:57:38 as
	Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 19. (11 May 2004), pp. 7287-7292. by David H. Mathews, Matthew D. Disney, Jessica L. Childs, Susan J. Schroeder, Michael Zuker, Douglas H. Turner posted to thesis by ellarond on 2009-07-02 16:53:33 as along with 6 people and 1 group haarcuba eckart_bindewald arcticrasta condon Hosna austin beta
	A statistical sampling algorithm for RNA secondary structure prediction [My Copy] Nucl. Acids Res., Vol. 31, No. 24. (15 December 2003), pp. 7280-7301. by Ye Ding, Charles E. Lawrence posted to thesis by ellarond on 2009-07-02 16:39:30 as along with 3 people puranjoy_b arcticrasta Hosna
	Vienna RNA secondary structure server [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3429-3431. by Ivo L. Hofacker posted to thesis by ellarond on 2009-07-02 16:38:32 as along with 13 people stharward heliopais evaf dayjm eckart_bindewald balicea arcticrasta mtagaya dquest ilh onufriev maralena reyez
	Mfold web server for nucleic acid folding and hybridization prediction. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3406-3415. by Michael Zuker posted to thesis by ellarond on 2009-07-02 16:37:09 as along with 12 people and 2 groups stharward guhjy heliopais daforerog guxiyou davidng dayjm balajis dquest stsaft cdawson vwchan beta GIG
	Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson−Crick Base Pairs† [My Copy] Biochemistry, Vol. 37, No. 42. (1 October 1998), pp. 14719-14735. by Tianbing Xia, John Santalucia, Mark E. Burkard, et al.Ryszard Kierzek, Susan J. Schroeder, Xiaoqi Jiao, Christopher Cox, Douglas H. Turner posted to thesis by ellarond on 2009-07-02 16:32:47 as along with 4 people gzm55 allmensch svozil Hosna
	RNA folding energy landscapes [My Copy] PNAS, Vol. 97, No. 2. (18 January 2000), pp. 646-651. by Shi-Jie Chen, Ken A. Dill posted to thesis by ellarond on 2009-06-17 14:38:27 as along with 4 people and 3 groups marcius condon mtw ARobson beta BioinfoCIPF SGU-CIPF
	RNA hairpin-folding kinetics. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 4. (19 February 2002), pp. 1931-1936. by W. Zhang, S. J. Chen posted to thesis by ellarond on 2009-06-17 14:37:22 as
	Predicting RNA folding thermodynamics with a reduced chain representation model. [My Copy] RNA, Vol. 11, No. 12. (December 2005), pp. 1884-1897. by S. Cao, S. J. Chen posted to thesis by ellarond on 2009-06-17 14:36:22 as along with 2 people mtagaya physics
	A New Computational Approach for Mechanical Folding Kinetics of RNA Hairpins [My Copy] Biophysical Journal, Vol. 96, No. 10. (20 May 2009), pp. 4024-4034. by Song Cao, Shi-Jie Chen posted to thesis by ellarond on 2009-06-17 14:35:32 as along with 1 person physics
	Discrete state model and accurate estimation of loop entropy of RNA secondary structures. [My Copy] The Journal of chemical physics, Vol. 128, No. 12. (28 March 2008) by J. Zhang, M. Lin, R. Chen, W. Wang, J. Liang posted to thesis by ellarond on 2009-06-17 14:28:25 as
	Three-dimensional structure of a hammerhead ribozyme. [My Copy] Nature, Vol. 372, No. 6501. (3 November 1994), pp. 68-74. by H. W. Pley, K. M. Flaherty, D. B. McKay posted to thesis by ellarond on 2009-05-13 08:36:59 as
	A kinetic approach to the prediction of RNA secondary structures. [My Copy] Journal of biomolecular structure & dynamics, Vol. 2, No. 5. (February 1985), pp. 953-962. by A. A. Mironov, L. P. Dyakonova, A. E. Kister posted to thesis by ellarond on 2009-05-13 05:47:25 as
	Modeling RNA folding paths with pseudoknots: Application to hepatitis delta virus ribozyme [My Copy] PNAS, Vol. 97, No. 12. (6 June 2000), pp. 6515-6520. by Herve Isambert, Eric D. Siggia posted to thesis by ellarond on 2009-05-03 14:47:39 as along with 4 people austin eckart_bindewald Hosna Kiarostami
	Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_2. (1 July 2005), pp. W605-610. by A. Xayaphoummine, T. Bucher, H. Isambert posted to thesis by ellarond on 2009-05-03 14:47:02 as along with 4 people haarcuba oteri austin Kiarostami
	Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction. [My Copy] BMC Bioinformatics, Vol. 5 (5 August 2004) by K. J. Doshi, J. J. Cannone, C. W. Cobaugh, R. R. Gutell posted to thesis by ellarond on 2009-04-19 21:05:16 as along with 3 people heliopais eckart_bindewald arcticrasta