emptyhb's experimental_method [22 articles] Export

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	Experimental determination of the evolvability of a transcription factor. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 44. (3 November 2009), pp. 18650-18655. by Sebastian J. Maerkl, Stephen R. Quake posted to transcription_factor protein_dna_interactions mitomi experimental_method by emptyhb on 2009-11-06 22:25:03 as along with 5 people maximilianh kintoki sameersoi aalibes bpcusack
	Visualisation and Quantification of Morphogen Gradient Formation in the Zebrafish [My Copy] PLoS Biology, Vol. 7, No. 5. (1 May 2009), e101. by Steven A. Harvey, James C. Smith posted to experimental_method morphogen_gradient by emptyhb on 2009-05-11 08:39:37 as
	Global mapping of protein-DNA interactions in vivo by digital genomic footprinting [My Copy] Nat Meth, Vol. 6, No. 4. (22 April 2009), pp. 283-289. by Jay R. Hesselberth, Xiaoyu Chen, Zhihong Zhang, et al.Peter J. Sabo, Richard Sandstrom, Alex P. Reynolds, Robert E. Thurman, Shane Neph, Michael S. Kuehn, William S. Noble, Stanley Fields, John A. Stamatoyannopoulos posted to dna-protein_interaction experimental_method by emptyhb on 2009-05-01 13:58:41 as along with 7 people inesdesantiago kmdaily humburg roys coela fpattyn jbhiatt
	Microarray Profiling of Phage-Display Selections for Rapid Mapping of Transcription Factor–DNA Interactions [My Copy] PLoS Genet, Vol. 5, No. 4. (10 April 2009), e1000449. by Gordon Freckleton, Soyeon I. Lippman, James R. Broach, Saeed Tavazoie posted to dna-protein_interaction experimental_method by emptyhb on 2009-04-28 15:10:01 as
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted to experimental_method news_opinions by emptyhb on 2008-11-25 05:17:09 as along with 38 people and 3 groups hzoltan operon n00c kinestetika mtagaya jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani samjlord Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight caseybrown iSEEM moernerlab Bioinformatics - CRUK
	Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions. [My Copy] Nat Protoc, Vol. 2, No. 8. (2007), pp. 1849-1861. by L. M. Hellman, M. G. Fried posted to experimental_method by emptyhb on 2008-10-19 20:48:39 as along with 3 people daforerog guhjy shimi002
	Species-Specific Transcription in Mice Carrying Human Chromosome 21 [My Copy] Science (11 September 2008), 1160930. by Michael D. Wilson, Nuno L. Barbosa-Morais, Dominic Schmidt, et al.Caitlin M. Conboy, Lesley Vanes, Victor L. Tybulewicz, Elizabeth M. Fisher, Simon Tavare, Duncan T. Odom posted to experimental_method transcriptional_regulation cis_regulatory_variation by emptyhb on 2008-09-13 02:26:57 as along with 19 people and 2 groups ajaymalik cassj jbhiatt GustavoLacerda ptrobajo ivanek kaarsinogen jmjimenez jessopher isimpson dlobo djkt strands caseybrown erel10 Zephyrus sebastien_vigneau Stew bpcusack GEB Roswell Cancer Crosstalk
	Human-specific gain of function in a developmental enhancer. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350. by Shyam Prabhakar, Axel Visel, Jennifer A. Akiyama, et al.Malak Shoukry, Keith D. Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R. Fitzpatrick, Veena Afzal, Len A. Pennacchio, Edward M. Rubin, James P. Noonan posted to experimental_method cis_regulatory_variation by emptyhb on 2008-09-12 13:53:08 as along with 14 people and 1 group paulrigor Annab jfr Stew shoshin bpcusack Zephyrus sebastien_vigneau djkt natstreet isimpson maximilianh caseybrown eskay Roswell Cancer Crosstalk
	Nucleosome organization in the Drosophila genome [My Copy] Nature, Vol. 453, No. 7193. (13 April 2008), pp. 358-362. by Travis N. Mavrich, Cizhong Jiang, Ilya P. Ioshikhes, et al.Xiaoyong Li, Bryan J. Venters, Sara J. Zanton, Lynn P. Tomsho, Ji Qi, Robert L. Glaser, Stephan C. Schuster, David S. Gilmour, Istvan Albert, B. Franklin Pugh posted to basic_cell_machinary drosophila experimental_method transcriptional_regulation by emptyhb on 2008-07-31 18:43:31 as along with 7 people bpcusack tonamswish taroleo nklee djkt megraw yoonk
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted to dna-protein_interaction experimental_method motif_searching by emptyhb on 2008-07-26 16:58:02 as along with 16 people and 5 groups absterga xingxu cisstem Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais oelemento Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
	Functional Analysis of Repressor Binding Sites in the iab-2 Regulatory Region of the abdominal-A Homeotic Gene [My Copy] Developmental Biology, Vol. 218, No. 1. (1 February 2000), pp. 38-52. by Mary J. Shimell, Aidan J. Peterson, John Burr, Jeffrey A. Simon, Michael B. O'Connor posted to cis_regulatory_elements drosophila experimental_method function_study cis_regulatory_variation by emptyhb on 2008-07-10 16:44:44 as
	A simplified miRNA-based gene silencing method for Drosophila melanogaster [My Copy] Developmental Biology, Vol. In Press, Accepted Manuscript by Benjamin Haley, David Hendrix, Vinh Trang, Michael Levine posted to drosophila experimental_method by emptyhb on 2008-07-08 03:22:18 as
	Chromatin decouples promoter threshold from dynamic range [My Copy] Nature, Vol. 453, No. 7192. (16 April 2008), pp. 246-250. by Felix H. Lam, David J. Steger, Erin K. O/'Shea posted to basic_cell_machinary epigenetics experimental_method transcriptional_regulation by emptyhb on 2008-05-03 15:36:45 as along with 4 people talponer mmcclean inesdesantiago jjray
	Delivery codes for fly transgenics [My Copy] Nature Genetics, Vol. 40, No. 4., pp. 383-384. by Thomas C. Tubon, Jerry C. P. Yin posted to drosophila experimental_method by emptyhb on 2008-04-24 05:50:56 as
	High-resolution, high-throughput SNP mapping in Drosophila melanogaster [My Copy] Nature Methods, Vol. 5, No. 4. (09 March 2008), pp. 323-329. by Doris Chen, Annika Ahlford, Frank Schnorrer, et al.Irene Kalchhauser, Michaela Fellner, Erika Viràgh, Istvàn Kiss, Ann-Christine Syvänen, Barry J. Dickson posted to drosophila experimental_method news_opinions by emptyhb on 2008-04-01 07:21:26 as along with 1 person evolutionarygenetics
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to binding_sites_turnover experimental_method in-vivo_binding_sites species_divergence cis_regulatory_variation by emptyhb on 2008-03-21 02:02:57 as along with 22 people and 2 groups pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike nklee anka EisenLab cis-regulatory-evolution
	Two or Four Bristles: Functional Evolution of an Enhancer of scute in Drosophilidae [My Copy] PLoS Biology, Vol. 4, No. 12. (1 November 2006), e386. by Sylvain Marcellini, Pat Simpson posted to drosophila experimental_method phenotype cis_regulatory_variation by emptyhb on 2008-03-21 01:52:48 as along with 3 people and 1 group dpollard adepace emmahe EisenLab
	Positioning adjacent pair-rule stripes in the posterior Drosophila embryo. [My Copy] Development, Vol. 120, No. 10. (October 1994), pp. 2945-2955. by J. A. Langeland, S. F. Attai, K. Vorwerk, S. B. Carroll posted to cis_regulatory_elements drosophila experimental_method by emptyhb on 2008-03-19 18:24:49 as
	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. [My Copy] PLoS biology, Vol. 6, No. 2. (12 February 2008), e27. by X. Y. Li, S. MacArthur, R. Bourgon, et al.D. Nix, D. A. Pollard, V. N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C. L. Luengo Hendriks, H. C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S. E. Celniker, D. W. Knowles, T. Gingeras, T. P. Speed, M. B. Eisen, M. D. Biggin posted to drosophila experimental_method in-vivo_binding_sites by emptyhb on 2008-03-05 21:16:56 as along with 8 people and 1 group gdb daveGerrard kengg maximilianh caseybrown brant isimpson Stew BergmanLab
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted to in-vivo_binding_sites experimental_method chip by emptyhb on 2008-02-16 19:52:50 as along with 24 people and 5 groups oannes daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown dquest Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
	Site-specific transgenesis by Cre-mediated recombination in Drosophila [My Copy] Nature Methods, Vol. 2, No. 8. (21 July 2005), pp. 583-585. by Adam Oberstein, Adam Pare, Leah Kaplan, Stephen Small posted to drosophila experimental_method by emptyhb on 2008-01-22 02:40:49 as along with 1 person postrational
	A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors [My Copy] Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237. by Sebastian J. Maerkl, Stephen R. Quake posted to cis_regulatory_elements experimental_method by emptyhb on 2008-01-17 22:46:15 as along with 9 people and 2 groups absterga jjray dpollard emilyhare adepace aswin skoch3 blobbybirdman brant EisenLab Koch_Lab

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drosophila	95
cis_regulatory_variation	95
transcriptional_regulation	69
cis_regulatory_elements	56
natural_selection	52
population_genetics	49
dna-protein_interaction	31
review	25
experimental_method	22
motif_searching	22
mirna	17
species_divergence	17
even-skipped_enhancer	15
expression	15
systems_biology	14
binding_sites_turnover	14
function_study	14
molecular_evolution	12
noise_in_biological_systems	12
modeling_gene_network	11
news_opinions	10
phenotype	10
detecting_selection	9
cooperative_binding	8
statistical_method	7
microarray	7
genetic_buffering	7
yeast	7
in-vivo_binding_sites	7
trans_elements	6
pattern_formation	6
biophysics	6
tiling_array	5
epigenetics	5
molecular_biology	5
human	4
adaptation	4
transcription	4
protein_dna_interactions	4
ecology	3
software	3
earth_quake	3
phenotypic_evolution	3
basic_cell_machinary	3
neutral_theory	2
population_subdivision	2
regulatory_evolution	2
microfludics	2
plant	2
immune	2
chromosome_structure	2
nucleosome	2
mk_test	2
stat	2
dna_binding	2
codon_bias	1
spatial_variation	1
allergy	1
multiple_testing	1
sequencing	1
experimental_evolution	1
qtl_mapping	1
weak_binding_sites	1
alignment_method	1
file-import-09-02-19	1
proteomics	1
ohno	1
computation_method	1
copy_number_variation	1
modeling	1
polycomb_complex	1
molecular_mechanism	1
dna_shape	1
evo_devo	1
transcription_regulation	1
combinatorial_binding	1
horizontal_gene_transfer	1
sex_recombination	1
enhancer_biology	1
protein	1
cell_biology	1
enhancer	1
compensatory_evolution	1
genetic_background	1
hunchback	1
fluctuating_selection	1
gene_duplication	1
prokaryote	1
mitomi	1
human_adaptation	1
maximum_likelyhood	1
chip	1
linkage_analysis	1
morphogen_gradient	1
mutation_rate	1
transcription_factor	1
neurobiology	1
pigmentation	1
microscopy	1
reporter_gene_assay	1

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