engelhardt's library 104 articles Export

	Probabilistic non-linear principal component analysis with Gaussian process latent variable models [My Copy] Journal of Machine Learning Research, Vol. 6 (2005), pp. 1783-1816. by Neil Lawrence posted to sfa by engelhardt on 2009-11-19 15:24:08 as
	Infinite latent feature models and the Indian buffet process [My Copy] In Advances in Neural Information Processing Systems 18 (2006) by Tom L. Griffiths, Zoubin Ghahramani posted to sfa by engelhardt on 2009-11-12 16:05:42 as
	A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies [My Copy] PLoS Genet, Vol. 5, No. 6. (19 June 2009), e1000529. by Bryan N. Howie, Peter Donnelly, Jonathan Marchini posted to sfa imputation by engelhardt on 2009-11-11 21:32:09 as along with 7 people and 1 group maren xingxu kimorley rdiaz daforerog reyez djkt Journal picks
	Estimation of individual admixture: Analytical and study design considerations [My Copy] Genetic Epidemiology, Vol. 28, No. 4. (May 2005), pp. 289-301. by Hua Tang, Jie Peng, Pei Wang, Neil J. Risch posted to sfastructure by engelhardt on 2009-11-11 21:28:30 as along with 2 people and 1 group evoltropia sriram_s CGREL
	Reconstructing Genetic Ancestry Blocks in Admixed Individuals [My Copy] Vol. 79, No. 1. (1 July 2006), pp. 1-12. by Hua Tang, Marc Coram, Pei Wang, Xiaofeng Zhu, Neil Risch posted to structure sfa by engelhardt on 2009-11-11 21:24:23 as
	Structure of linkage disequilibrium and phenotypic associations in the maize genome [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 20. (25 September 2001), pp. 11479-11484. by David L. Remington, Jeffry M. Thornsberry, Yoshihiro Matsuoka, et al.Larissa M. Wilson, Sherry R. Whitt, John Doebley, Stephen Kresovich, Major M. Goodman, Edward S. Buckler posted to sfa by engelhardt on 2009-11-11 21:20:00 as along with 1 person maren
	Using DNA to track the origin of the largest ivory seizure since the 1989 trade ban [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 10. (6 March 2007), pp. 4228-4233. by Samuel K. Wasser, Celia Mailand, Rebecca Booth, et al.Benezeth Mutayoba, Emily Kisamo, Bill Clark, Matthew Stephens posted to structure sfa by engelhardt on 2009-11-11 21:17:35 as
	A genealogical interpretation of principal components analysis. [My Copy] PLoS Genetics, Vol. 5, No. 10. (16 October 2009), e1000686. by Gil McVean posted to sfa by engelhardt on 2009-11-05 23:03:45 as along with 6 people and 1 group sameersoi djkt bpcusack Geknitics reyez lp2 Journal picks
	Generating samples under a Wright-Fisher neutral model of genetic variation. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. 2. (1 February 2002), pp. 337-338. by Richard R. Hudson posted to sfa by engelhardt on 2009-11-04 20:47:28 as along with 7 people gdv druvus renewang jmeppley djkt vplagnol ryanraaum
	Reconstructing Indian population history [My Copy] Nature, Vol. 461, No. 7263. (24 September 2009), pp. 489-494. by David Reich, Kumarasamy Thangaraj, Nick Patterson, Alkes L. Price, Lalji Singh posted to structure sfa by engelhardt on 2009-10-26 16:04:44 as along with 10 people and 1 group Geknitics psique PaperCollector ommachi qayub daforerog farhat neils djkt diomede Journal picks
	Genetic Structure of Human Populations [My Copy] Science, Vol. 298, No. 5602. (20 December 2002), pp. 2381-2385. by Noah A. Rosenberg, Jonathan K. Pritchard, James L. Weber, et al.Howard M. Cann, Kenneth K. Kidd, Lev A. Zhivotovsky, Marcus W. Feldman posted to structure sfa by engelhardt on 2009-10-14 22:50:18 as along with 5 people carlk daforerog ilyashl kentsis vplagnol
	Reconstructing genetic ancestry blocks in admixed individuals. [My Copy] American journal of human genetics, Vol. 79, No. 1. (July 2006), pp. 1-12. by Hua Tang, Marc Coram, Pei Wang, Xiaofeng Zhu, Neil Risch posted to structure sfa by engelhardt on 2009-10-09 21:09:32 as along with 2 people and 2 groups dchughes sriram_s G4ID Genetics-of-Gambling
	Correlation between Genetic and Geographic Structure in Europe [My Copy] Vol. 18, No. 16. (26 August 2008), pp. 1241-1248. by Oscar Lao, Timothy T. Lu, Michael Nothnagel, et al.Olaf Junge, Sandra Freitag-Wolf, Amke Caliebe, Miroslava Balascakova, Jaume Bertranpetit, Laurence A. Bindoff, David Comas, Gunilla Holmlund, Anastasia Kouvatsi, Milan Macek, Isabelle Mollet, Walther Parson, Jukka Palo, Rafal Ploski, Antti Sajantila, Adriano Tagliabracci, Ulrik Gether, Thomas Werge, Fernando Rivadeneira, Albert Hofman, André G. Uitterlinden, Christian Gieger, Heinz-Erich Wichmann, Andreas Rüther, Stefan Schreiber, Christian Becker, Peter Nürnberg, Matthew R. Nelson, Michael Krawczak, Manfred Kayser posted to sfa by engelhardt on 2009-10-07 21:51:53 as
	Online Learning for Matrix Factorization and Sparse Coding [My Copy] (1 Aug 2009) by Julien Mairal, Francis Bach, Jean Ponce, Guillermo Sapiro posted to sfa by engelhardt on 2009-10-01 18:32:07 as along with 3 people jekky nliu82 markstoehr
	EM algorithms for PCA and SPCA [My Copy] In Neural Information Processing Systems 10 (1998), pp. 626-632. by Sam Roweis posted to sfa by engelhardt on 2009-09-30 18:53:05 as
	Population Structure and Eigenanalysis [My Copy] PLoS Genet, Vol. 2, No. 12. (22 December 2006), e190. by Nick Patterson, Alkes L. Price, David Reich posted to structure by engelhardt on 2009-09-23 21:45:14 as along with 5 people and 1 group ArtemPankin koller theseuskf vplagnol caseybrown Khavkin's lab
	Fast model-based estimation of ancestry in unrelated individuals [My Copy] Genome Research, Vol. 19, No. 9. (31 September 2009), pp. 1655-1664. by David H. Alexander, John Novembre, Kenneth Lange posted to structure by engelhardt on 2009-09-14 16:08:13 as along with 3 people xingxu djkt pkonings
	Accommodating linkage disequilibrium in genetic-association analyses via ridge regression. [My Copy] American journal of human genetics, Vol. 82, No. 2. (February 2008), pp. 375-385. by Nathalie Malo, Ondrej Libiger, Nicholas J. Schork posted to multipleloci by engelhardt on 2009-08-25 18:51:21 as
	Statistical Estimation of Correlated Genome Associations to a Quantitative Trait Network [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000587. by Seyoung Kim, Eric P. Xing posted to gwas by engelhardt on 2009-08-25 17:27:22 as along with 3 people rdiaz djkt pkonings
	Calmodulin-binding transcription activator 1 (CAMTA1) alleles predispose human episodic memory performance [My Copy] Hum. Mol. Genet., Vol. 16, No. 12. (15 June 2007), pp. 1469-1477. by Matthew J. Huentelman, Andreas Papassotiropoulos, David W. Craig, et al.Frederic J. Hoerndli, John V. Pearson, Kim-Dung Huynh, Jason Corneveaux, Jurgen Hanggi, Christian R. A. Mondadori, Andreas Buchmann, Eric M. Reiman, Katharina Henke, Dominique J. F. de Quervain, Dietrich A. Stephan posted to gwas by engelhardt on 2009-08-21 21:35:39 as
	A spectral graph approach to discovering genetic ancestry [My Copy] Annals of Applied Statistics, Vol. 3, No. 3. (2009) by A. B. Lee, Diana Luca, K. Roeder posted to sfa by engelhardt on 2009-08-21 15:29:16 as
	Genomic and transcriptional aberrations linked to breast cancer pathophysiologies [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 529-541. by Koei Chin, Sandy Devries, Jane Fridlyand, et al.Paul T. Spellman, Ritu Roydasgupta, Wen-Lin Kuo, Anna Lapuk, Richard M. Neve, Zuwei Qian, Tom Ryder posted to gwas by engelhardt on 2009-08-20 22:22:51 as along with 4 people oelemento jfr chrisamiller frohike
	Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis [My Copy] PLoS Comput Biol, Vol. 3, No. 8. (17 August 2007), e161. by Andrew E. Teschendorff, Michel Journée, Pierre A. Absil, Rodolphe Sepulchre, Carlos Caldas posted to gwas by engelhardt on 2009-08-20 22:08:49 as along with 3 people jfr ghattem krokicki
	Genetics of human gene expression: mapping DNA variants that influence gene expression. [My Copy] Nature reviews. Genetics, Vol. 10, No. 9. (28 September 2009), pp. 595-604. by Vivian G. Cheung, Richard S. Spielman posted to eqtl by engelhardt on 2009-08-18 17:55:10 as along with 17 people and 1 group rcr1991 PaulaBO Zephyrus greg frohike psique giovanni PabloMarin TRHvidsten misonneh sameersoi rdiaz ericrpaquet ilyashl jbhiatt pkonings guhjy Journal picks
	Enhanced automated function prediction using distantly related sequences and contextual association by PFP. [My Copy] Protein science : a publication of the Protein Society, Vol. 15, No. 6. (1 June 2006), pp. 1550-1556. by Troy Hawkins, Stanislav Luban, Daisuke Kihara posted to sifter by engelhardt on 2009-08-04 19:15:44 as along with 2 people eckart_bindewald sgoetz
	Probabilistic non-linear principal component analysis with Gaussian process latent variable models [My Copy] Journal of Machine Learning Research, Vol. 6 (2005), pp. 1783-1816. by Neil Lawrence posted to sfa by engelhardt on 2009-08-03 16:52:44 as
	Adaptive optimization and D-optimum experimental design [My Copy] The Annals of Statistics, Vol. 28, No. 6. (2000), pp. 1743-1761. by Luc Pronzato posted to sifter by engelhardt on 2009-07-31 16:28:57 as
	Information-Based Objective Functions for Active Data Selection [My Copy] Neural Computation, Vol. 4 (0), pp. 590-604. by David J. C. Mackay posted to sifter by engelhardt on 2009-07-31 16:19:31 as along with 1 person luispedro
	Heterogeneous Uncertainty Sampling for Supervised Learning [My Copy] In In Proceedings of the Eleventh International Conference on Machine Learning (1994), pp. 148-156. by David D. Lewis, Jason Catlett posted to sifter by engelhardt on 2009-07-31 16:10:18 as
	Selective Sampling Using the Query by Committee Algorithm [My Copy] Machine Learning, Vol. 28, No. 2. (1 August 1997), pp. 133-168. by Yoav Freund, H. Sebastian Seung, Eli Shamir, Naftali Tishby posted to sifter by engelhardt on 2009-07-31 16:09:05 as
	Query by Committee [My Copy] (1992) by H. S. Seung, M. Opper, H. Sompolinsky posted to sifter by engelhardt on 2009-07-31 16:06:58 as
	Recombinant expression of twelve evolutionarily diverse subfamily Iα aminotransferases [My Copy] Protein Expression and Purification, Vol. 57, No. 1. (January 2008), pp. 34-44. by Kathryn E. Muratore, John R. Srouji, Margaret A. Chow, Jack F. Kirsch posted to sifter by engelhardt on 2009-07-31 15:40:12 as
	Chaperone signalling complexes in Alzheimer's disease. [My Copy] Journal of cellular and molecular medicine, Vol. 13, No. 4. (April 2009), pp. 619-630. by John Koren, Umesh K. Jinwal, Daniel C. Lee, et al.Jeffrey R. Jones, Cody L. Shults, Amelia G. Johnson, Laura J. Anderson, Chad A. Dickey posted to sifter by engelhardt on 2009-07-31 15:35:17 as
	FFPred: an integrated feature-based function prediction server for vertebrate proteomes [My Copy] Nucl. Acids Res. (7 May 2008), gkn193. by A. E. Lobley, T. Nugent, C. A. Orengo, D. T. Jones posted to sifter by engelhardt on 2009-07-21 22:01:50 as
	mStruct: Inference of Population Structure in Light of Both Genetic Admixing and Allele Mutations. [My Copy] Genetics, Vol. 182, No. 2. (1 June 2009), pp. 575-593. by S. Shringarpure, E. P. Xing posted to no-tag by engelhardt on 2009-07-01 21:51:04 as along with 1 person djkt
	Nonparametric factor analysis with beta process priors [My Copy] In ICML '09: Proceedings of the 26th Annual International Conference on Machine Learning (2009), pp. 777-784. by John Paisley, Lawrence Carin posted to no-tag by engelhardt on 2009-07-01 21:48:32 as along with 1 person bertelsen
	Biologically valid linear factor models of gene expression [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3021-3033. by Mark Girolami, Rainer Breitling posted to sfa by engelhardt on 2009-07-01 21:24:32 as along with 1 person bertelsen
	A Bayesian regression approach to the inference of regulatory networks from gene expression data [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3131-3137. by Simon Rogers, Mark Girolami posted to sfa by engelhardt on 2009-07-01 21:09:13 as along with 3 people siebert tvdbulck ptrobajo
	Deterministic latent variable models and their pitfalls [My Copy] In SIAM Conference on Data Mining (SDM) (2008), pp. 196-207. by M. Welling, C. Chemudugunta, N. Sutter posted to sfa by engelhardt on 2009-07-01 19:39:47 as
	Bayesian Exponential Family PCA [My Copy] In Neural Information Processing Systems (2008) by S. Mohamed, K. Heller, Z. Ghahramani posted to sfa by engelhardt on 2009-06-29 23:33:53 as
	Algorithms for Non-negative Matrix Factorization [My Copy] In Advances in Neural Information Processing Systems 13 (2001), pp. 556-562. by Daniel D. Lee, Sebastian H. Seung posted to sfa by engelhardt on 2009-06-26 22:16:03 as
	Factorization with Uncertainty [My Copy] In In European Conference on Computer Vision (2000), pp. 539-553. by Michal Irani, P. Anandan posted to sfa by engelhardt on 2009-06-25 16:26:12 as
	Probabilistic Principal Component Analysis [My Copy] Journal of the Royal Statistical Society, Series B, Vol. 61 (1999), pp. 611-622. by Michael E. Tipping, Christopher M. Bishop posted to sfa by engelhardt on 2009-06-19 15:26:38 as along with 4 people abellogin babakap daniel51 dpl33
	Probabilistic Principal Component Analysis [My Copy] Journal of the Royal Statistical Society, Series B, Vol. 61, No. 3. (1999), pp. 611-622. by Michael E. Tipping, Christopher M. Bishop posted to sfa by engelhardt on 2009-06-17 22:47:11 as
	Semi-parametric exponential family PCA [My Copy] In Neural Information Processing Systems (2004) by Sajama, A. Orlitsky posted to sfa by engelhardt on 2009-06-17 16:42:25 as
	Semi-parametric exponential family PCA [My Copy] In Neural Information Processing Systems (2004) by Sajama, A. Orlitsky posted to sfa by engelhardt on 2009-06-17 16:38:20 as
	Efficient global optimization for exponential family PCA and low-rank matrix factorization [My Copy] In Allerton Conference on Communication, Control, and Computing (2008) by Y. Guo, D. Schuurmans posted to sfa by engelhardt on 2009-06-17 16:35:14 as
	A generalization of principal components analysis to the exponential family [My Copy] In Neural Information Processing Systems (2001) by M. Collins, S. Dasgupta, R. E. Schapire posted to sfa by engelhardt on 2009-06-15 22:40:28 as
	Protein molecular function prediction by Bayesian phylogenomics. [My Copy] PLoS computational biology, Vol. 1, No. 5. (7 October 2005) by B. E. Engelhardt, M. I. Jordan, K. E. Muratore, S. E. Brenner posted to sifter by engelhardt on 2009-06-15 21:35:30 as along with 9 people and 4 groups sgoetz kentsis ana eoghanharr Einat dlr marcius sriram_s bootsy structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	ConFunc--functional annotation in the twilight zone [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 798-806. by Mark N. Wass, Michael J. E. Sternberg posted to sifter by engelhardt on 2009-06-15 21:30:24 as