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epigenetics's methylation [100 articles]

Recent papers added to epigenetics's library classified by the tag methylation. You can also see everyone's methylation.
  • Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
    Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5868-5877.
    by Alexander Meissner, Andreas Gnirke, George W Bell, Bernard Ramsahoye, Eric S Lander, Rudolf Jaenisch
    posted to epigenetics epigenome methods methylation by epigenetics on 2008-08-21 13:36:30 as *****
  • A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation.
    Nature structural & molecular biology (11 July 2008)
    by Shima Nakanishi, Brian W W Sanderson, Kym M M Delventhal, William D D Bradford, Karen Staehling-Hampton, Ali Shilatifard
    posted to chromatin epigenetics histone methylation by epigenetics on 2008-08-01 13:53:22 as *****
  • DNA methylation analysis by digital bisulfite genomic sequencing and digital MethyLight.
    Nucleic acids research (15 July 2008)
    by Daniel J J Weisenberger, Binh N N Trinh, Mihaela Campan, Shikhar Sharma, Tiffany I I Long, Suchitra Ananthnarayan, Gangning Liang, Francisco J J Esteva, Gabriel N N Hortobagyi, Frank McCormick, Peter A A Jones, Peter W W Laird
    posted to epigenetics methods methylation by epigenetics on 2008-08-01 13:52:43 as *****
  • notes Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000116.
    by Cassandra R Farthing, Gabriella Ficz, Ray K Ng, Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik
  • DNA methyltransferase loading, but not de novo methylation, is an oocyte-autonomous process stimulated by SCF signalling.
    Developmental biology (25 June 2008)
    by Diane J J Lees-Murdock, Ho-Tak T Lau, Diego H H Castrillon, Massimo De Felici, Colum P P Walsh
  • MeCP2, a Key Contributor to Neurological Disease, Activates and Represses Transcription
    Science, Vol. 320, No. 5880. (30 May 2008), pp. 1224-1229.
    by Maria Chahrour, Sung Y Jung, Chad Shaw, Xiaobo Zhou, Stephen T Wong, Jun Qin, Huda Y Zoghbi
  • Structural mechanism of demethylation and inactivation of protein phosphatase 2A.
    Cell, Vol. 133, No. 1. (4 April 2008), pp. 154-163.
    by Y Xing, Z Li, Y Chen, JB Stock, PD Jeffrey, Y Shi
  • Histone acetylation and methylation at sites initiating divergent polycistronic transcription in trypanosoma cruzi
    J. Biol. Chem. (9 April 2008), M802081200.
    by Patricia Respuela, Marcela Ferella, Alvaro Rada-Iglesias, Lena Aslund
    posted to chromatin epigenetics evolution histone methylation by epigenetics on 2008-04-25 15:48:49 as ***
  • Histone lysine methyltransferases and demethylases in Plasmodium falciparum.
    International journal for parasitology (26 January 2008)
    by Liwang Cui, Qi Fan, Long Cui, Jun Miao
    posted to chromatin crps epigenetics histone methylation parasite protist by epigenetics on 2008-04-10 23:14:48 as *****
  • Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis
    Nucl. Acids Res., Vol. 36, No. 5. (1 March 2008), e34.
    by Christian Rohde, Yingying Zhang, Tomasz P Jurkowski, Heinrich Stamerjohanns, Richard Reinhardt, Albert Jeltsch
  • Sensitive Melting Analysis after Real Time - Methylation Specific PCR (SMART-MSP): high-throughput and probe-free quantitative DNA methylation detection
    Nucl. Acids Res. (15 March 2008), gkn113.
    by Lasse S Kristensen, Thomas Mikeska, Michael Krypuy, Alexander Dobrovic
    posted to epigenetics methods methylation by epigenetics on 2008-04-10 22:58:24 as **** along with 1 person jyuh
  • An analytical pipeline for genomic representations used for cytosine methylation studies
    Bioinformatics (18 March 2008), btn096.
    by Reid F Thompson, Mark Reimers, Batbayar Khulan, Mathieu Gissot, Todd A Richmond, Quan Chen, Xin Zheng, Kami Kim, John M Greally
  • Cytosine methylation profiling of cancer cell lines
    Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4844-4849.
    by Mathias Ehrich, Julia Turner, Peter Gibbs, Lara Lipton, Mara Giovanneti, Charles Cantor, Dirk van den Boom
    posted to cancer epigenetics epigenome methylation methylome by epigenetics on 2008-04-10 22:50:29 as *****
  • Presence and role of cytosine methylation in DNA viruses of animals
    Nucl. Acids Res. (26 March 2008), gkn121.
    by Karin Hoelzer, Laura A Shackelton, Colin R Parrish
    posted to epigenetics methylation reviews virology by epigenetics on 2008-04-10 22:47:10 as ****
  • The loss of methyl-CpG binding protein 1 leads to autism-like behavioral deficits
    Hum. Mol. Genet. (1 April 2008), ddn102.
    by Andrea M Allan, Xiaomin Liang, Yuping Luo, Changhui Pak, Xuekun Li, Keith E Szulwach, Dahua Chen, Peng Jin, Xinyu Zhao
    posted to behavior disease epigenetics mbd methylation neuroscience by epigenetics on 2008-04-10 22:43:56 as **
  • Nutritional Control of Reproductive Status in Honeybees via DNA Methylation.
    Science (13 March 2008)
  • Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana.
    Molecular and cellular biology, Vol. 28, No. 4. (February 2008), pp. 1348-1360.
    by L Xu, Z Zhao, A Dong, L Soubigou-Taconnat, JP Renou, A Steinmetz, WH Shen
    posted to chromatin histone methylation plant by epigenetics on 2008-04-08 14:13:43 as **** along with 1 person kengg
  • Cyclical DNA methylation of a transcriptionally active promoter
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 45-50.
    by Raphael Metivier, Rozenn Gallais, Christophe Tiffoche, Christine Le Peron, Renata Z Jurkowska, Richard P Carmouche, David Ibberson, Peter Barath, Florence Demay, George Reid, Vladimir Benes, Albert Jeltsch, Frank Gannon, Gilles Salbert
  • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    Nature (17 February 2008)
    by Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen
  • Different Mechanisms Cause Imprinting defects at the IGF2/H19 locus in Beckwith-Wiedemann Syndrome and Wilms' Tumour
    Hum. Mol. Genet. (1 February 2008), ddn031.
    by Flavia Cerrato, Angela Sparago, Gaetano Verde, Agostina De Crescenzo, Valentina Citro, Maria V Cubellis, Maria M Rinaldi, Luigi Boccuto, Giovanni Neri, Cinzia Magnani, Paolo D'Angelo, Paola Collini, Daniela Perotti, Gianfranco Sebastio, Eamonn Maher, Andrea Riccio
  • Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 462-465.
    by Hidetoshi Saze, Akiko Shiraishi, Asuka Miura, Tetsuji Kakutani
  • DNA Oxidation as Triggered by H3K9me2 Demethylation Drives Estrogen-Induced Gene Expression
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 202-206.
    by Bruno Perillo, Maria N Ombra, Alessandra Bertoni, Concetta Cuozzo, Silvana Sacchetti, Annarita Sasso, Lorenzo Chiariotti, Antonio Malorni, Ciro Abbondanza, Enrico V Avvedimento
  • Germ-line mutations, DNA damage, and global hypermethylation in mice exposed to particulate air pollution in an urban/industrial location
    Proceedings of the National Academy of Sciences (14 January 2008), 0705896105.
    by Carole Yauk, Aris Polyzos, Andrea Rowan-Carroll, Christopher M Somers, Roger W Godschalk, Frederik J Schooten, Lynn M Berndt, Igor P Pogribny, Igor Koturbash, Andrew Williams, George R Douglas, Olga Kovalchuk
  • Developmental timing in Dictyostelium is regulated by the Set1 histone methyltransferase
    Developmental Biology, Vol. 292, No. 2. (15 April 2006), pp. 519-532.
    by Jonathan R Chubb, Gareth Bloomfield, Qikai Xu, Markus Kaller, Al Ivens, Jason Skelton, Bryan M Turner, Wolfgang Nellen, Gad Shaulsky, Robert R Kay, Wendy A Bickmore, Robert H Singer
    posted to chromatin development epigenetics histone methylation protist by epigenetics on 2008-01-11 14:54:24 as *****
  • Developmentally Regulated DNA Methylation in Dictyostelium discoideum
    Eukaryotic Cell, Vol. 5, No. 1. (1 January 2006), pp. 18-25.
    by Mariko Katoh, Tomaz Curk, Qikai Xu, Blaz Zupan, Adam Kuspa, Gad Shaulsky
    posted to development epigenetics erv methylation by epigenetics on 2008-01-10 09:57:21 as *****
  • Abnormal methylation of imprinted genes in human sperm is associated with oligozoospermia
    Mol. Hum. Reprod. (4 January 2008), gam093.
    by CJ Marques, P Costa, B Vaz, F Carvalho, S Fernandes, A Barros, M Sousa
    posted to epigenetics methylation reproduction by epigenetics on 2008-01-09 17:28:26 as *****
  • Toxoplasma gondii and Cryptosporidium parvum lack detectable DNA cytosine methylation
    Eukaryotic Cell (4 January 2008), EC.00448-07.
    by Mathieu Gissot, Sang-Woon Choi, Reid F Thompson, John M Greally, Kami Kim
    posted to epigenetics methylation parasite by epigenetics on 2008-01-09 17:27:19 as *****
  • A ligation assay for multiplex analysis of CpG methylation using bisulfite-treated DNA
    Nucl. Acids Res., Vol. 35, No. 21. (18 December 2007), e144.
    by Christina Dahl, Per Guldberg
    posted to epigenetics methods methylation by epigenetics on 2007-12-22 15:44:10 as *****
  • Sensing X Chromosome Pairs Before X Inactivation via a Novel X-Pairing Region of the Xic
    Science, Vol. 318, No. 5856. (7 December 2007), pp. 1632-1636.
    by S Augui, GJ Filion, S Huart, E Nora, M Guggiari, M Maresca, AF Stewart, E Heard
  • The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA
    Nature (11 November 2007)
    by Jafar Sharif, Masahiro Muto, Shin-Ichiro Takebayashi, Isao Suetake, Akihiro Iwamatsu, Takaho A Endo, Jun Shinga, Yoko Mizutani-Koseki, Tetsuro Toyoda, Kunihiro Okamura, Shoji Tajima, Kohzoh Mitsuya, Masaki Okano, Haruhiko Koseki
  • DNA methylation, insulin resistance, and blood pressure in offspring determined by maternal periconceptional B vitamin and methionine status.
    Proc Natl Acad Sci U S A (27 November 2007)
    by Kevin D D Sinclair, Cinzia Allegrucci, Ravinder Singh, David S S Gardner, Sonia Sebastian, Jayson Bispham, Alexandra Thurston, John F F Huntley, William D D Rees, Christopher A A Maloney, Richard G G Lea, Jim Craigon, Tom G G McEvoy, Lorraine E E Young
  • Combined inhaled diesel exhaust particles and allergen exposure alter methylation of T helper genes and IgE production in vivo.
    Toxicol Sci (27 November 2007)
    by Jinming Liu, Manisha Ballaney, Umaima Al-Alem, Chunli Quan, Ximei Jin, Frederica Perera, Lung-Chi C Chen, Rachel L L Miller
    posted to environment epigenetics immunology methylation toxicology by epigenetics on 2007-12-06 19:20:24 as *****
  • The Obesity-Associated FTO Gene Encodes a 2-Oxoglutarate-Dependent Nucleic Acid Demethylase
    Science, Vol. 318, No. 5855. (30 November 2007), pp. 1469-1472.
    by Thomas Gerken, Christophe A Girard, Yi-Chun L Tung, Celia J Webby, Vladimir Saudek, Kirsty S Hewitson, Giles S Yeo, Michael A Mcdonough, Sharon Cunliffe, Luke A Mcneill, Juris Galvanovskis, Patrik Rorsman, Peter Robins, Xavier Prieur, Anthony P Coll, Marcella Ma, Zorica Jovanovic, Sadaf I Farooqi, Barbara Sedgwick, Ines Barroso, Tomas Lindahl, Chris P Ponting, Frances M Ashcroft, Stephen O'Rahilly, Christopher J Schofield
    posted to disease epigenetics metabolism methylation by epigenetics on 2007-12-06 19:17:33 as read
  • Allele-specific demethylation at an imprinted mammalian promoter
    Nucl. Acids Res., Vol. 35, No. 20. (29 November 2007), pp. 7031-7039.
    by Andrew J Wood, Deborah Bourc'his, Timothy H Bestor, Rebecca J Oakey
  • Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes.
    Proc Natl Acad Sci U S A (27 November 2007)
    by Dag H H Yasui, Sailaja Peddada, Mark C C Bieda, Roxanne O O Vallero, Amber Hogart, Raman P P Nagarajan, Karen N N Thatcher, Peggy J J Farnham, Janine M M Lasalle
  • DNA methyltransferase 3B (DNMT3B) mutations in ICF syndrome lead to altered epigenetic modifications and aberrant expression of genes regulating development, neurogenesis, and immune function
    Hum. Mol. Genet. (27 November 2007), ddm341.
    by Bilian Jin, Qian Tao, Jinrong Peng, Hui M Soo, Wei Wu, Jianming Ying, Robert C Fields, Amber L Delmas, Xuefeng Liu, Jingxin Qiu, Keith D Robertson
  • Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA
    Genome Res. (21 November 2007), gr.6883307.
    by Yulia Korshunova, Rebecca K Maloney, Nathan Lakey, Robert W Citek, Blaire Bacher, Arief Budiman, Jared M Ordway, Richard W Mccombie, Jorge Leon, Jeffrey A Jeddeloh, John D Mcpherson
  • DNA methylation analysis using metal complex formation
    NUCLEIC ACIDS SYMP SER (OXF), Vol. 51, No. 1. (1 November 2007), pp. 27-28.
    by Akimitsu Okamoto, Kazuo Tanaka, Kazuki Tainaka, Tadashi Umemoto, Akiko Nomura
    posted to epigenetics methods methylation by epigenetics on 2007-11-22 18:32:15 as *****
  • The plant homeodomain finger of RAG2 recognizes histone H3 methylated at both lysine-4 and arginine-2
    Proceedings of the National Academy of Sciences (19 November 2007), 0709170104.
    by Santiago Ramon-Maiques, Alex J Kuo, Dylan Carney, Adam G Matthews, Marjorie A Oettinger, Or Gozani, Wei Yang
    posted to epigenetics histone chromatin methylation plant structure by epigenetics on 2007-11-22 18:30:40 as *****
  • Inheritance of an Epigenetic Mark: The CpG DNA Methyltransferase 1 Is Required for De Novo Establishment of a Complex Pattern of Non-CpG Methylation.
    PLoS ONE, Vol. 2, No. 11. (2007)
  • Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15785-15790.
    posted to epigenetics methods methylation by epigenetics on 2007-11-12 13:56:04 as *****
  • DNA methylation analysis by pyrosequencing.
    Nat Protoc, Vol. 2, No. 9. (2007), pp. 2265-2275.
    by J Tost, IG Gut
    posted to epigenetics epigenome methods methylation pyrosequencing by epigenetics on 2007-11-12 13:53:32 as *****
  • Genetic Interactions between DNA demethylation and methylation in Arabidopsis thaliana.
    Plant Physiol (19 October 2007)
    by Jon Penterman, Rie Uzawa, Robert L L Fischer
    posted to epigenetics methylation plant by epigenetics on 2007-11-07 15:41:17 as ****
  • Methylation-Specific Fluorescent Amplicon Generation, a Novel Real-Time Signal Generation Method for Methylation-Specific PCR.
    Clin Chem (25 October 2007)
    by Cinzia Bonanno, Erlet Shehi, Daniel Adlerstein, G Mike M Makrigiorgos
    posted to epigenetics methods methylation by epigenetics on 2007-11-07 15:40:40 as *****
  • Genome-wide analysis of DNA methylation patterns
    Development (10 October 2007), dev.001131.
    by Daniel Zilberman, Steven Henikoff
  • A multistep epigenetic switch enables the stable inheritance of DNA methylation states.
    Nat Genet (14 January 2007)
    by Han N N Lim, Alexander van Oudenaarden
  • Chromosome territory reorganization in a human disease with altered DNA methylation.
    Proc Natl Acad Sci U S A (8 October 2007)
    by Maria R R Matarazzo, Shelagh Boyle, Maurizio D'Esposito, Wendy A A Bickmore
  • A New Dimethyl Sulfoxide-Based Method for Gene Promoter Methylation Detection
    J Mol Diagn (4 October 2007), jmoldx.2007.070025.
    by Natalia Kholod, Jacques Boniver, Philippe Delvenne
    posted to epigenetics methods methylation by epigenetics on 2007-10-04 20:06:56 as *****
  • A real-time PCR assay for DNA-methylation using methylation-specific blockers
    Nucl. Acids Res., Vol. 32, No. 1. (13 January 2004), e10.
    by Susan E Cottrell, Jurgen Distler, Nancy S Goodman, Suzanne H Mooney, Antje Kluth, Alexander Olek, Ina Schwope, Reimo Tetzner, Heike Ziebarth, Kurt Berlin
    posted to epigenetics methods methylation by epigenetics on 2007-10-01 17:01:59 as *****
  • Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation
    Nature (26 September 2007)
    by Antonis Kirmizis, Helena Santos-Rosa, Christopher J Penkett, Michael A Singer, Michiel Vermeulen, Matthias Mann, Jürg Bähler, Roland D Green, Tony Kouzarides
    posted to chromatin epigenetics histone methylation structure by epigenetics on 2007-10-01 11:34:45 as *****
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