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	RNA silencing and genome regulation [My Copy] Trends in Cell Biology, Vol. 15, No. 5. (May 2005), pp. 251-258. by Ricardo Almeida, Robin C. Allshire posted to mirna ncrna regulation rna silencing by eskay on 2008-08-15 16:23:29 as
	Novel and efficient RNA secondary structure prediction using hierarchical folding. [My Copy] J Comput Biol, Vol. 15, No. 2. (March 2008), pp. 139-163. by H. Jabbari, A. Condon, S. Zhao posted to rna seconday structure by eskay on 2008-05-26 14:02:06 as along with 2 people physics Hosna
	SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure Prediction [My Copy] Computational Intelligence and Bioinformatics and Computational Biology, 2006. CIBCB '06. 2006 IEEE Symposium on In Computational Intelligence and Bioinformatics and Computational Biology, 2006. CIBCB '06. 2006 IEEE Symposium on (2006), pp. 1-10. by Herbert H. Tsang, Kay C. Wiese posted to annealing rna secondary simulated by eskay on 2008-10-27 03:45:53 as along with 1 person htsang
	Forces Shaping the Fastest Evolving Regions in the Human Genome [My Copy] PLoS Genet, Vol. 2, No. 10. (13 October 2006), e168. by Katherine S. Pollard, Sofie R. Salama, Bryan King, et al.Andrew D. Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S. Pedersen, Gill Bejerano, Robert Baertsch, Kate R. Rosenbloom, Jim Kent, David Haussler posted to har by eskay on 2008-10-26 01:27:48 as along with 6 people and 2 groups balicea sriesenfeld skembel nickluscombe iris42 rvosa EBI-regulation FAB-lab
	Human-specific gain of function in a developmental enhancer. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350. by Shyam Prabhakar, Axel Visel, Jennifer A. Akiyama, et al.Malak Shoukry, Keith D. Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R. Fitzpatrick, Veena Afzal, Len A. Pennacchio, Edward M. Rubin, James P. Noonan posted to development har ncrna by eskay on 2008-09-05 00:44:44 as along with 14 people and 1 group paulrigor Annab jfr Stew shoshin bpcusack emptyhb Zephyrus sebastien_vigneau djkt natstreet isimpson maximilianh caseybrown Roswell Cancer Crosstalk
	Non-coding RNAs: hope or hype? [My Copy] Trends in Genetics, Vol. 21, No. 5. (May 2005), pp. 289-297. by Alexander Hüttenhofer, Peter Schattner, Norbert Polacek posted to ncrna review by eskay on 2008-08-23 18:28:11 as along with 7 people YukaH antonkratz myrtilus setar eckart_bindewald arcticrasta raylim
	Unveiling substrate RNA binding to H/ACA RNPs: one side fits all [My Copy] Current Opinion in Structural Biology In Folding and Binding / Protein-nucleic acid interactions, Vol. 18, No. 1. (February 2008), pp. 78-85. by Hong Li posted to binding haca rnp snorna by eskay on 2008-08-15 16:01:59 as
	Host immune system gene targeting by a viral miRNA. [My Copy] Science (New York, N.Y.), Vol. 317, No. 5836. (20 July 2007), pp. 376-381. by Noam Stern-Ginossar, Naama Elefant, Albert Zimmermann, et al.Dana G. Wolf, Nivin Saleh, Moshe Biton, Elad Horwitz, Zafnat Prokocimer, Mark Prichard, Gabriele Hahn, Debra Goldman-Wohl, Caryn Greenfield, Simcha Yagel, Hartmut Hengel, Yael Altuvia, Hanah Margalit, Ofer Mandelboim posted to herpes immune mirna by eskay on 2008-08-13 21:05:49 as along with 3 people and 2 groups ptrobajo mtagaya wsjames Bioinformatics Oxford Virology
	Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA. [My Copy] Nat Biotechnol, Vol. 20, No. 9. (September 2002), pp. 940-943. by N. N. Iscove, M. Barbara, M. Gu, M. Gibson, C. Modi, N. Winegarden posted to amplification microarrays by eskay on 2008-06-17 21:28:39 as along with 2 people rschulz miguel
	A structure-based flexible search method for motifs in RNA. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 7. (September 2007), pp. 908-926. by I. Veksler-Lublinsky, M. Ziv-Ukelson, D. Barash, K. Kedem posted to motifs ncrna rna structure by eskay on 2008-05-26 14:20:23 as along with 1 person wowalz
	Translational control of localized mRNAs: restricting protein synthesis in space and time [My Copy] Nature Reviews Molecular Cell Biology, Vol. 9, No. 12., pp. 971-980. by Florence Besse, Anne Ephrussi posted to regulation review transcription by eskay on 2008-11-24 14:05:22 as along with 2 people margaritis raycay3
	Using quaternions to calculate RMSD. [My Copy] J Comput Chem, Vol. 25, No. 15. (30 November 2004), pp. 1849-1857. by E. A. Coutsias, C. Seok, K. A. Dill posted to 494 protein rmsd by eskay on 2008-10-16 20:45:54 as along with 6 people Diego_Prada BragilMassoud apaydin nachtalp dgront rabio
	How RNA Unfolds and Refolds [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 77-100. by Pan T. X. Li, Jeffrey Vieregg, Ignacio Tinoco posted to folding rna structure by eskay on 2008-09-14 00:57:47 as along with 2 people cactus aip
	Small is beautiful: microRNAs and breast cancer-where are we now? [My Copy] The Journal of pathology, Vol. 215, No. 3. (July 2008), pp. 214-221. by E. Verghese, A. Hanby, V. Speirs, T. Hughes posted to breast cancer mirna by eskay on 2008-08-16 22:18:20 as along with 3 people valeriehilgers Zephyrus jfr
	The spliceosome: a ribozyme at heart? [My Copy] Biological chemistry, Vol. 388, No. 7. (July 2007), pp. 693-697. by S. Valadkhan posted to snrna spliceosome by eskay on 2008-08-16 22:04:26 as
	Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence [My Copy] Nucl. Acids Res., Vol. 36, No. 6. (1 April 2008), pp. 1913-1927. by Gilly Padalon-Brauch, Ruth Hershberg, Maya Elgrably-Weiss, et al.Kobi Baruch, Ilan Rosenshine, Hanah Margalit, Shoshy Altuvia posted to ncrna salmonella by eskay on 2008-08-16 21:36:36 as along with 1 person smbe2008
	Exploration of Small RNAs [My Copy] PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e22. by Hideya Kawaji, Yoshihide Hayashizaki posted to ncrna review by eskay on 2008-08-15 16:03:11 as along with 1 person GeeSharpMinor
	Controlling mRNA stability and translation with small, noncoding RNAs [My Copy] Current Opinion in Microbiology, Vol. 7, No. 2. (April 2004), pp. 140-144. by Gisela Storz, Jason A. Opdyke, Aixia Zhang posted to ecoli ncrna srna by eskay on 2008-08-15 14:34:57 as along with 1 person and 1 group danadewey MuraLab
	MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs [My Copy] Nature (02 July 2008) by Jennifer L. Umbach, Martha F. Kramer, Igor Jurak, Heather W. Karnowski, Donald M. Coen, Bryan R. Cullen posted to mirna regulation by eskay on 2008-08-13 20:56:45 as along with 1 person tmmurali
	A method for gene expression analysis by oligonucleotide arrays from minute biological materials [My Copy] Analytical Biochemistry, Vol. 331, No. 2. (15 August 2004), pp. 329-339. by Wan Ji, Wenli Zhou, Keqin Gregg, Klaus Lindpaintner, Sara Davis, Scott Davis posted to microarrays by eskay on 2008-06-17 21:28:19 as
	Evaluation of procedures for amplification of small-size samples for hybridization on microarrays [My Copy] Genomics, Vol. 83, No. 3. (March 2004), pp. 508-517. by Sandra Klur, Karen Toy, Mickey P. Williams, Ulrich Certa posted to amplification microarrays by eskay on 2008-06-17 21:27:58 as
	Logic functions of the genomic cis-regulatory code. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4954-4959. by S. Istrail, E. H. Davidson posted to cis regulation by eskay on 2008-05-26 15:47:58 as along with 1 person and 2 groups kengg Bioinformatics Plantandetc
	Mapping of Small RNAs in the Human ENCODE Regions [My Copy] The American Journal of Human Genetics, Vol. 82, No. 4. (11 April 2008), pp. 971-981. by Christelle Borel, Maryline Gagnebin, Corinne Gehrig, Evgenia V. Kriventseva, Evgeny M. Zdobnov, Stylianos E. Antonarakis posted to encode ncrna by eskay on 2008-05-26 15:14:57 as along with 1 person inesdesantiago
	Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. [My Copy] Nature, Vol. 453, No. 7194. (22 May 2008), pp. 534-538. by Oliver H. Tam, Alexei A. Aravin, Paula Stein, et al.Angelique Girard, Elizabeth P. Murchison, Sihem Cheloufi, Emily Hodges, Martin Anger, Ravi Sachidanandam, Richard M. Schultz, Gregory J. Hannon posted to ncrna pseudogene by eskay on 2008-05-26 15:10:27 as along with 6 people sebastien_vigneau galka8_diploma natstreet gjuggler rschulz inesdesantiago
	Comprehensive analysis of affymetrix exon arrays using BioConductor. [My Copy] PLoS computational biology, Vol. 4, No. 2. (29 February 2008), e6. by Michał J. Okoniewski, Crispin J. Miller posted to bioconductor microarrays by eskay on 2008-05-26 14:48:57 as along with 8 people frohike daveGerrard floatingpoint guhjy neils giovenko jfr chrisamiller
	Asymptotics of RNA Shapes [My Copy] Journal of Computational Biology, Vol. 15, No. 1. (2008), pp. 31-63. by W. A. Lorenz, Y. Ponty, P. Clote posted to rna seconday structure by eskay on 2008-05-26 14:12:43 as
	Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000176. by Marcel E. Dinger, Ken C. Pang, Tim R. Mercer, John S. Mattick posted to ncrna prediction by eskay on 2008-11-28 16:23:18 as along with 10 people and 1 group rschulz Zephyrus hpaces GustavoLacerda reyez dswan agustinarce gfliustu cmn GeeSharpMinor Roswell Cancer Crosstalk
	Optimization by Simulated Annealing [My Copy] Science, Vol. 220, No. 4598. (13 May 1983), pp. 671-680. by S. Kirkpatrick, C. D. Gelatt, M. P. Vecchi posted to annealing simulated by eskay on 2008-10-27 03:48:16 as along with 16 people ckmyo duelines chrisfischer poirel brothers vtraag rtsade jstephens kentz czeller gale82 ddahlem Bc91 naegele ywlin newton1234
	Description of RNA Folding by "Simulated Annealing"> [My Copy] Journal of Molecular Biology, Vol. 255, No. 1. (12 January 1996), pp. 254-266. by Michael Schmitz, Gerhard Steger posted to annealing rna secondary simulated by eskay on 2008-10-27 03:44:17 as along with 2 people nicholasflann guxiyou
	High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs. [My Copy] PloS one, Vol. 3, No. 9. (2008) by J. Livny, H. Teonadi, M. Livny, M. K. Waldor posted to bacteria ncrna prediction by eskay on 2008-09-20 19:28:01 as along with 4 people and 1 group azazello thomaskf druvus stajich Mycology
	How RNA folds. [My Copy] J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 271-281. by I. Tinoco, C. Bustamante posted to folding hierarchical rna structure by eskay on 2008-09-14 01:09:31 as along with 10 people and 3 groups rb_india dayjm marcius eckart_bindewald perrywoo arcticrasta condon Hosna apop physics beta BioinfoCIPF SGU-CIPF
	The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems. [My Copy] EMBO Rep, Vol. 1, No. 1. (July 2000), pp. 18-23. by G. Varani, W. H. McClain posted to rna secondary structure by eskay on 2008-08-23 22:13:57 as along with 2 people allmensch evaf
	The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. [My Copy] Cell, Vol. 35, No. 3 Pt 2. (December 1983), pp. 849-857. by C. Guerrier-Takada, K. Gardiner, T. Marsh, N. Pace, S. Altman posted to ribozyme rnasep by eskay on 2008-08-16 22:14:39 as
	The structure and function of small nucleolar ribonucleoproteins. [My Copy] Nucleic acids research, Vol. 35, No. 5. (2007), pp. 1452-1464. by S. L. Reichow, T. Hamma, A. R. Ferré-D'Amaré, G. Varani posted to review snorna by eskay on 2008-08-16 22:06:43 as
	The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. [My Copy] Science, Vol. 311, No. 5758. (13 January 2006), pp. 230-232. by S. Kishore, S. Stamm posted to pws snorna by eskay on 2008-08-16 21:58:27 as along with 1 person mtagaya
	Cancer-associated genomic regions (CAGRs) and noncoding RNAs: bioinformatics and therapeutic implications [My Copy] Mammalian Genome by Simona Rossi, Cinzia Sevignani, Stephanie Nnadi, Linda Siracusa, George Calin posted to cancer mirna ncrna by eskay on 2008-08-16 21:27:48 as along with 1 person jfr
	A computational screen for C/D box snoRNAs in the human genomic region associated with Prader-Willi and Angelman syndromes [My Copy] Journal of Biomedical Science by Padmavati Sridhar, Hin Gan, Tamar Schlick posted to prediction snorna by eskay on 2008-08-15 20:04:48 as
	Vertebrate MicroRNA Genes [My Copy] Science, Vol. 299, No. 5612. (07 March 2003), 1540. by Lee P. Lim, Margaret E. Glasner, Soraya Yekta, Christopher B. Burge, David P. Bartel posted to mirna mirscan prediction by eskay on 2008-08-15 19:31:28 as along with 6 people and 1 group reyez heliopais martin-novak cassj maryee akiezun microRNA
	Brain-specific small nucleolar RNAs [My Copy] Journal of Molecular Neuroscience, Vol. 28, No. 2. (24 February 2006), pp. 103-109. by Boris Rogelj posted to brain snorna by eskay on 2008-08-15 18:00:58 as
	Chemistry across scales: from molecules to cells. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 365, No. 1861. (15 December 2007), pp. 2921-2934. by Sophia N. Yaliraki, Mauricio Barahona posted to biology systems by eskay on 2008-06-12 14:58:47 as
	Chemical genomics: a challenge for de novo drug design [My Copy] Molecular Biotechnology, Vol. 37, No. 3. (11 November 2007), pp. 237-245. by P. Dean posted to design drug review by eskay on 2008-06-12 14:57:44 as
	Genome-wide mapping of allele-specific protein-DNA interactions in human cells [My Copy] Nature Methods, Vol. 5, No. 4. (16 March 2008), pp. 307-309. by Nathaniel D. Maynard, Jing Chen, Rhona K. Stuart, Jian-Bing Fan, Bing Ren posted to binding chip snp by eskay on 2008-05-26 15:17:46 as along with 3 people zwang guhjy inesdesantiago
	Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. [My Copy] Nature, Vol. 453, No. 7194. (22 May 2008), pp. 539-543. by Toshiaki Watanabe, Yasushi Totoki, Atsushi Toyoda, et al.Masahiro Kaneda, Satomi Kuramochi-Miyagawa, Yayoi Obata, Hatsune Chiba, Yuji Kohara, Tomohiro Kono, Toru Nakano, M. Azim Surani, Yoshiyuki Sakaki, Hiroyuki Sasaki posted to ncrna by eskay on 2008-05-26 15:12:02 as along with 7 people jrhill sebastien_vigneau galka8_diploma mtagaya rschulz gjuggler inesdesantiago
	Transposable elements and the evolution of regulatory networks [My Copy] Nat Rev Genet, Vol. 9, No. 5. (27 May 2008), pp. 397-405. by Cedric Feschotte posted to evolution regulation transcription by eskay on 2008-05-26 15:10:07 as along with 12 people and 1 group robfsouza fhalbrit balicea gwallau djkt bootsy idonaldson cmzmasek smbe2008 roys pradiptaray timflutre BergmanLab
	Opposition to transgenic technologies: ideology, interests and collective action frames [My Copy] Nature Reviews Genetics, Vol. 9, No. 6., pp. 458-463. by Ronald J. Herring posted to random by eskay on 2008-05-26 14:53:34 as along with 3 people rlgonzalez ricmilne dchughes
	Evolutionary patterns in the sequence and structure of transfer RNA: early origins of archaea and viruses. [My Copy] PLoS computational biology, Vol. 4, No. 3. (March 2008) by F. J. Sun, G. Caetano-Anollés posted to evolution trna by eskay on 2008-05-26 14:48:00 as
	A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (28 March 2008), e1000044. by Jason Ernst, Qasim K. Beg, Krin A. Kay, Gábor Balázsi, Zoltán N. Oltvai, Ziv Bar-Joseph posted to factor network transcription by eskay on 2008-05-26 14:42:36 as along with 4 people tienholin roys nklee xili03
	Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by I. E. Sánchez, P. Beltrao, F. Stricher, et al.J. Schymkowitz, J. Ferkinghoff-Borg, F. Rousseau, L. Serrano posted to binding domain prediction by eskay on 2008-05-26 14:30:24 as along with 2 people cabbagesofdoom kgutwin
	A generalized allosteric mechanism for cis-regulated cyclic nucleotide binding domains. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by A. P. Kornev, S. S. Taylor, L. F. Ten Eyck posted to binding domain by eskay on 2008-05-26 14:29:43 as
	Implementing arithmetic and other analytic operations by transcriptional regulation. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by S. M. Cory, T. J. Perkins posted to regulation by eskay on 2008-05-26 14:28:26 as along with 6 people and 1 group balabu bayesian jjray maximilianh dquest dbikard SynBioSys

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