evaf's library 226 articles Export

	Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA [My Copy] Genome Research, Vol. 17, No. 1. (6 January 2007), pp. 117-125. by Eva K. Freyhult, Jonathan P. Bollback, Paul P. Gardner posted to homology rna by evaf on 2008-06-11 21:42:12 as along with 11 people and 2 groups natstreet druvus jfr eckart_bindewald ppgardne gpalidwor dchughes aswin bjhaugen jayster4 yoanjacquemin G4ID Genetics-of-Gambling
	RNAbor: a web server for RNA structural neighbors. [My Copy] Nucleic Acids Res (25 May 2007) by Eva Freyhult, Vincent Moulton, Peter Clote posted to rna structure by evaf on 2008-06-11 21:39:21 as along with 2 people and 2 groups marcius sebastien_vigneau BioinfoCIPF SGU-CIPF
	Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression. [My Copy] Cancer cell, Vol. 5, No. 5. (May 2004), pp. 489-500. by C. H. Chung, J. S. Parker, G. Karaca, et al.J. Wu, W. K. Funkhouser, D. Moore, D. Butterfoss, D. Xiang, A. Zanation, X. Yin, W. W. Shockley, M. C. Weissler, L. G. Dressler, C. G. Shores, W. G. Yarbrough, C. M. Perou posted to no-tag by evaf on 2008-06-11 11:32:04 as
	Molecular portraits of human breast tumours. [My Copy] Nature, Vol. 406, No. 6797. (17 August 2000), pp. 747-752. by C. M. Perou, T. Sørlie, M. B. Eisen, et al.M. van de Rijn, S. S. Jeffrey, C. A. Rees, J. R. Pollack, D. T. Ross, H. Johnsen, L. A. Akslen, O. Fluge, A. Pergamenschikov, C. Williams, S. X. Zhu, P. E. Lønning, A. L. Børresen-Dale, P. O. Brown, D. Botstein posted to no-tag by evaf on 2008-06-11 11:31:05 as along with 6 people lwaldron Zephyrus misonneh ruszczyk jfr frohike
	Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874. by T. Sørlie, C. M. Perou, R. Tibshirani, et al.T. Aas, S. Geisler, H. Johnsen, T. Hastie, M. B. Eisen, M. van de Rijn, S. S. Jeffrey, T. Thorsen, H. Quist, J. C. Matese, P. O. Brown, D. Botstein, P. Eystein Lønning, A. L. Børresen-Dale posted to no-tag by evaf on 2008-06-11 11:30:15 as along with 5 people Zephyrus windman83 jfr frohike macavity1g
	Diversity of gene expression in adenocarcinoma of the lung. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 24. (20 November 2001), pp. 13784-13789. by M. E. Garber, O. G. Troyanskaya, K. Schluens, et al.S. Petersen, Z. Thaesler, M. Pacyna-Gengelbach, M. van de Rijn, G. D. Rosen, C. M. Perou, R. I. Whyte, R. B. Altman, P. O. Brown, D. Botstein, I. Petersen posted to no-tag by evaf on 2008-06-11 11:28:29 as
	Two prognostically significant subtypes of high-grade lung neuroendocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles. [My Copy] Lancet, Vol. 363, No. 9411. (6 March 2004), pp. 775-781. by M. H. Jones, C. Virtanen, D. Honjoh, et al.T. Miyoshi, Y. Satoh, S. Okumura, K. Nakagawa, H. Nomura, Y. Ishikawa posted to no-tag by evaf on 2008-06-11 11:27:29 as
	Predicting hepatitis B virus-positive metastatic hepatocellular carcinomas using gene expression profiling and supervised machine learning. [My Copy] Nature medicine, Vol. 9, No. 4. (April 2003), pp. 416-423. by Q. H. Ye, L. X. Qin, M. Forgues, et al.P. He, J. W. Kim, A. C. Peng, R. Simon, Y. Li, A. I. Robles, Y. Chen, Z. C. Ma, Z. Q. Wu, S. L. Ye, Y. K. Liu, Z. Y. Tang, X. W. Wang posted to microarray by evaf on 2008-06-11 10:05:24 as
	Use of Gene-Expression Profiling to Identify Prognostic Subclasses in Adult Acute Myeloid Leukemia [My Copy] N Engl J Med, Vol. 350, No. 16. (15 April 2004), pp. 1605-1616. by Lars Bullinger, Konstanze Dohner, Eric Bair, et al.Stefan Frohling, Richard F. Schlenk, Robert Tibshirani, Hartmut Dohner, Jonathan R. Pollack posted to microarray by evaf on 2008-06-11 10:00:28 as along with 1 person kentz
	Variation in gene expression patterns in follicular lymphoma and the response to rituximab. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1926-1930. by S. P. Bohen, O. G. Troyanskaya, O. Alter, et al.R. Warnke, D. Botstein, P. O. Brown, R. Levy posted to microarray by evaf on 2008-06-11 09:55:58 as along with 1 person lhonigberg
	Evolutionary patterns of non-coding RNAs [My Copy] Theory in Biosciences, Vol. 123, No. 4. (15 April 2005), pp. 301-369. by Athanasius F. Bompfunewerer, Christoph Flamm, Claudia Fried, et al.Guido Fritzsch, Ivo L. Hofacker, Jorg Lehmann, Kristin Missal, Axel Mosig, Bettina Muller, Sonja J. Prohaska posted to no-tag by evaf on 2006-06-05 09:40:03 as along with 3 people and 2 groups Eonwe ilh bsmagic Bioinformatics bioinplant
	RNA secondary structures and their prediction [My Copy] Bulletin of Mathemetical Biology, Vol. 46 (1984), pp. 591-621. by Michael Zuker, David Sankoff posted to no-tag by evaf on 2006-01-16 14:38:35 as along with 2 people arcticrasta matriz
	Predicting RNA structure using mutual information. [My Copy] Appl Bioinformatics, Vol. 4, No. 1. (2005), pp. 53-59. by E. Freyhult, V. Moulton, P. Gardner posted to bioinformatics rna structure by evaf on 2006-01-12 15:11:18 as along with 4 people and 2 groups marcius eckart_bindewald eweaver arcticrasta BioinfoCIPF SGU-CIPF
	Identity elements of tRNA(Thr) towards Saccharomyces cerevisiae threonyl-tRNA synthetase [My Copy] Nucleic Acids Res., Vol. 23, No. 15. (11 August 1995), pp. 2831-2836. by N. Nameki posted to trna-trnalogo by evaf on 2005-05-02 15:53:07 as
	Overlapping nucleotide determinants for specific aminoacylation of RNA microhelices [My Copy] Science, Vol. 255, No. 5048. (28 February 1992), pp. 1121-1125. by C. Francklyn, J. P. Shi, P. Schimmel posted to trna-trnalogo by evaf on 2005-05-02 15:51:04 as
	Evidence that a major determinant for the identity of a transfer RNA is conserved in evolution [My Copy] Biochemistry, Vol. 28, No. 17. (22 August 1989), pp. 6800-6804. by Y. M. Hou, P. Schimmel posted to trna-trnalogo by evaf on 2005-05-02 15:50:34 as
	A simple structural feature is a major determinant of the identity of a transfer RNA [My Copy] Nature, Vol. 333, No. 6169. (12 May 1988), pp. 140-145. by Y. M. Hou, P. Schimmel posted to trna-trnalogo by evaf on 2005-05-02 15:48:37 as along with 1 person LamBras
	Structure in tRNA data [My Copy] Biochimie, Vol. 64, No. 6. (June 1982), pp. 387-397. by H. Grosjean, R. J. Cedergren, W. Mckay posted to trna-trnalogo by evaf on 2005-05-02 15:47:04 as
	Identity elements of tRNA(Trp). Identification and evolutionary conservation [My Copy] J. Biol. Chem., Vol. 268, No. 13. (5 May 1993), pp. 9316-9322. by H. Xue, W. Shen, R. Giege, J. T. Wong posted to trna-trnalogo by evaf on 2005-05-02 15:43:36 as
	Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide. [My Copy] In RNA Biochemistry and Biotechnology (1999) by D. M. &. D. T. Zuker edited by J. B. &. B. Barciszewski posted to rna secondary_structure by evaf on 2005-05-02 08:55:07 as along with 1 person guxiyou
	Modelling 'evo-devo' with RNA. [My Copy] Bioessays, Vol. 24, No. 12. (December 2002), pp. 1164-1177. by W. Fontana posted to rna by evaf on 2005-04-06 15:31:53 as along with 3 people rklancer alexisgallagher eckart_bindewald
	RNA folding and unfolding. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 374-379. by B. Onoa, I. Tinoco posted to rna rna_folding by evaf on 2005-04-06 15:29:06 as along with 7 people and 3 groups rb_india marcius arcticrasta condon Hosna emidio_capriotti apop beta BioinfoCIPF SGU-CIPF
	Reduced contact order and RNA folding rates. [My Copy] J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1359-1365. by T. R. Sosnick, T. Pan posted to rna rna_folding by evaf on 2005-04-06 15:25:44 as along with 2 people and 2 groups marcius emidio_capriotti BioinfoCIPF SGU-CIPF
	RNA folding: models and perspectives. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 309-316. by T. R. Sosnick, T. Pan posted to fold rna rna_folding by evaf on 2005-04-06 15:25:08 as along with 3 people and 2 groups marcius Hosna austin BioinfoCIPF SGU-CIPF
	Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15310-15315. by A. Xayaphoummine, T. Bucher, F. Thalmann, H. Isambert posted to pseudoknot rna secondary_structure by evaf on 2005-04-06 12:21:14 as along with 6 people and 3 groups austin marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
	RNA molecules with structure dependent functions are uniquely folded. [My Copy] Nucleic Acids Res, Vol. 30, No. 16. (15 August 2002), pp. 3574-3582. by S. Y. Le, K. Zhang, J. V. Maizel posted to rna secondary_structure by evaf on 2005-04-06 06:45:11 as
	Co-transcriptional folding is encoded within RNA genes. [My Copy] BMC Mol. Biol., Vol. 5, No. 1. (6 August 2004) by I. M. Meyer, I. Miklos posted to rna by evaf on 2005-03-18 08:09:02 as along with 5 people and 3 groups bpcusack marcius condon Hosna raylim beta BioinfoCIPF SGU-CIPF
	Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (10 March 2005), 50. by Eva Freyhult, Peteris Prusis, Maris Lapinsh, Jarl E. Wikberg, Vincent Moulton, Mats G. Gustafsson posted to chemometrics proteochemometrics by evaf on 2005-03-14 14:47:14 as
	Plasticity, evolvability, and modularity in RNA. [My Copy] J Exp Zool, Vol. 288, No. 3. (15 October 2000), pp. 242-283. by L. W. Ancel, W. Fontana posted to rna secondary_structure by evaf on 2005-03-14 10:01:30 as along with 2 people antonkratz amorgan
	Vienna RNA Secondary Structure Package [My Copy] posted to rna secondary_structure by evaf on 2005-03-11 06:49:41 as
	Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. [My Copy] Nucleic acids research, Vol. 9, No. 1. (10 January 1981), pp. 133-148. by M. Zuker, P. Stiegler posted to rna secondary_structure by evaf on 2005-03-10 21:23:49 as along with 11 people and 2 groups rb_india NicholasErho saunders agrobledo gzm55 heliopais marcius arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
	Prediction of RNA secondary structure by energy minimization. [My Copy] Methods Mol Biol, Vol. 25 (1994), pp. 267-294. by M. Zuker posted to rna secondary_structure by evaf on 2005-03-10 21:23:45 as along with 1 person arcticrasta
	The European ribosomal RNA database. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by Jan Wuyts, Guy Perrière, Yves Van De Peer posted to database rna rrna by evaf on 2005-03-10 21:23:41 as
	Complete suboptimal folding of RNA and the stability of secondary structures. [My Copy] Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165. by S. Wuchty, W. Fontana, I. L. Hofacker, P. Schuster posted to rna secondary_structure suboptimal by evaf on 2005-03-10 21:23:36 as along with 1 person mtw
	No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution. [My Copy] Nucleic Acids Res, Vol. 27, No. 24. (15 December 1999), pp. 4816-4822. by C. Workman, A. Krogh posted to dinucleotide energy mrna rna shuffle by evaf on 2005-03-10 21:23:32 as
	The genome sequence of Schizosaccharomyces pombe. [My Copy] Nature, Vol. 415, No. 6874. (21 February 2002), pp. 871-880. by V. Wood, R. Gwilliam, M. A. Rajandream, et al.M. Lyne, R. Lyne, A. Stewart, J. Sgouros, N. Peat, J. Hayles, S. Baker, D. Basham, S. Bowman, K. Brooks, D. Brown, S. Brown, T. Chillingworth, C. Churcher, M. Collins, R. Connor, A. Cronin, P. Davis, T. Feltwell, A. Fraser, S. Gentles, A. Goble, N. Hamlin, D. Harris, J. Hidalgo, G. Hodgson, S. Holroyd, T. Hornsby, S. Howarth, E. J. Huckle, S. Hunt, K. Jagels, K. James, L. Jones, M. Jones, S. Leather, S. McDonald, J. McLean, P. Mooney, S. Moule, K. Mungall, L. Murphy, D. Niblett, C. Odell, K. Oliver, S. O'Neil, D. Pearson, M. A. Quail, E. Rabbinowitsch, K. Rutherford, S. Rutter, D. Saunders, K. Seeger, S. Sharp, J. Skelton, M. Simmonds, R. Squares, S. Squares, K. Stevens, K. Taylor, R. G. Taylor, A. Tivey, S. Walsh, T. Warren, S. Whitehead, J. Woodward, G. Volckaert, R. Aert, J. Robben, B. Grymonprez, I. Weltjens, E. Vanstreels, M. Rieger, M. Schäfer, S. Müller-Auer, C. Gabel, M. Fuchs, A. Düsterhöft, C. Fritzc, E. Holzer, D. Moestl, H. Hilbert, K. Borzym, I. Langer, A. Beck, H. Lehrach, R. Reinhardt, T. M. Pohl, P. Eger, W. Zimmermann, H. Wedler, R. Wambutt, B. Purnelle, A. Goffeau, E. Cadieu, S. Dréano, S. Gloux, V. Lelaure, S. Mottier, F. Galibert, S. J. Aves, Z. Xiang, C. Hunt, K. Moore, S. M. Hurst, M. Lucas, M. Rochet, C. Gaillardin, V. A. Tallada, A. Garzon, G. Thode, R. R. Daga, L. Cruzado, J. Jimenez, M. Sánchez, F. del Rey, J. Benito, A. Domínguez, J. L. Revuelta, S. Moreno, J. Armstrong, S. L. Forsburg, L. Cerutti, T. Lowe, W. R. McCombie, I. Paulsen, J. Potashkin, G. V. Shpakovski, D. Ussery, B. G. Barrell, P. Nurse, L. Cerrutti posted to genome rna yeast by evaf on 2005-03-10 21:23:28 as along with 1 person Cortel
	Conserved RNA secondary structures in Picornaviridae genomes. [My Copy] Nucleic Acids Res, Vol. 29, No. 24. (15 December 2001), pp. 5079-5089. by C. Witwer, S. Rauscher, I. L. Hofacker, P. F. Stadler posted to rna secondary_structure virus by evaf on 2005-03-10 21:23:20 as along with 1 person ilh
	Melanocortin receptors: ligands and proteochemometrics modeling. [My Copy] Ann N Y Acad Sci, Vol. 994 (June 2003), pp. 21-26. by J. E. Wikberg, F. Mutulis, I. Mutule, et al.S. Veiksina, M. Lapinsh, R. Petrovska, P. Prusis posted to chemometrics proteochemometrics by evaf on 2005-03-10 21:23:15 as
	Fast and reliable prediction of noncoding RNAs. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2454-2459. by S. Washietl, I. L. Hofacker, P. F. Stadler posted to non-coding rna by evaf on 2005-03-10 21:23:10 as along with 14 people and 3 groups rb_india NicholasErho antonkratz balaji heliopais gangli dayjm marcius eckart_bindewald tardigrade dquest Eonwe ilh raylim tulip BioinfoCIPF SGU-CIPF
	Evaluating the predictability of conformational switching in RNA. [My Copy] Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1573-1582. by B. Voss, C. Meyer, R. Giegerich posted to riboswitch rna by evaf on 2005-03-10 21:23:06 as
	Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element. [My Copy] RNA, Vol. 9, No. 9. (September 2003), pp. 1084-1097. by A. G. Vitreschak, D. A. Rodionov, A. A. Mironov, M. S. Gelfand posted to regulatory_element rna by evaf on 2005-03-10 21:23:02 as
	Identification of 13 novel human modification guide RNAs. [My Copy] Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003), pp. 6543-6551. by P. Vitali, H. Royo, H. Seitz, J. P. Bachellerie, A. Hüttenhofer, J. Cavaillé posted to rna snorna by evaf on 2005-03-10 21:22:58 as along with 1 person mtagaya
	The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems. [My Copy] EMBO Rep, Vol. 1, No. 1. (July 2000), pp. 18-23. by G. Varani, W. H. McClain posted to rna wobble by evaf on 2005-03-10 21:22:54 as along with 2 people allmensch eskay
	Discovering regulatory elements in non-coding sequences by analysis of spaced dyads. [My Copy] Nucleic Acids Res, Vol. 28, No. 8. (15 April 2000), pp. 1808-1818. by J. van Helden, A. F. Rios, J. Collado-Vides posted to non-coding regulatory_element rna by evaf on 2005-03-10 21:22:50 as
	Improved parameters for prediction of RNA structure. [My Copy] Cold Spring Harb Symp Quant Biol, Vol. 52 (1987), pp. 123-133. by D. H. Turner, N. Sugimoto, J. A. Jaeger, C. E. Longfellow, S. M. Freier, R. Kierzek posted to rna secondary_structure by evaf on 2005-03-10 21:22:46 as
	RNA structure prediction. [My Copy] Annu Rev Biophys Biophys Chem, Vol. 17 (1988), pp. 167-192. by D. H. Turner, N. Sugimoto posted to rna secondary_structure by evaf on 2005-03-10 21:22:41 as
	The complete genome sequence of the gastric pathogen Helicobacter pylori. [My Copy] Nature, Vol. 388, No. 6642. (7 August 1997), pp. 539-547. by J. F. Tomb, O. White, A. R. Kerlavage, et al.R. A. Clayton, G. G. Sutton, R. D. Fleischmann, K. A. Ketchum, H. P. Klenk, S. Gill, B. A. Dougherty, K. Nelson, J. Quackenbush, L. Zhou, E. F. Kirkness, S. Peterson, B. Loftus, D. Richardson, R. Dodson, H. G. Khalak, A. Glodek, K. McKenney, L. M. Fitzegerald, N. Lee, M. D. Adams, J. C. Venter posted to genome by evaf on 2005-03-10 21:22:37 as along with 2 people bjorns xingxu
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted to alignment by evaf on 2005-03-10 21:22:33 as along with 34 people and 1 group biomcgary vprieto tomjad oceanwind Blackbeard db344 udivi daforerog Md_2007 sebk cen4ik usagi-kirin jmw greger_halltorp jshapiro mercaptan caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica timflutre adijr xingxu newton1234 Lombardo_7 biomedical-nlp
	A GC-rich sequence within the 5' untranslated region of human basonuclin mRNA inhibits its translation. [My Copy] Gene, Vol. 237, No. 1. (3 September 1999), pp. 35-44. by W. Tang, H. Tseng posted to regulatory_element rna utr by evaf on 2005-03-10 21:22:29 as
	Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs. [My Copy] Bioessays, Vol. 26, No. 8. (August 2004), pp. 833-843. by M. Suzuki, Y. Hayashizaki posted to coding non-coding rna by evaf on 2005-03-10 21:22:25 as

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rna	159
secondary_structure	41
trna	24
chemometrics	20
regulatory_element	16
mrna	12
non-coding	12
snorna	12
yeast	12
utr	11
comparative	8
genome	8
motif	8
pseudoknot	8
alignment	7
database	7
proteochemometrics	7
trna-trnalogo	6
evolution	5
qsar	5
energy	4
microarray	4
virus	4
kinetics	3
mirna	3
protein	3
rna_folding	3
shuffle	3
biosensor	2
dinucleotide	2
fold	2
information_content	2
ire	2
partition_function	2
phylogenetics	2
pls	2
riboswitch	2
rrna	2
secis	2
srp	2
structure	2
suboptimal	2
3d-qsar	1
adenovirus	1
bioinformatics	1
blast	1
cluster	1
coding	1
consensus_structure	1
genetic_algorithm	1
homology	1
mirna_precursor	1
mirna_target	1
neural_network	1
permutation	1
prion	1
rnai	1
rna-non-coding	1
rna-secondary_structure	1
rna-secondary_structure-partition_function	1
rnasemrp	1
rnasep	1
scfg	1
sirna	1
snrna	1
tetraloop	1
tmrna	1
wobble	1

evaf's library 226 articles Export

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