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	Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA [My Copy] Genome Research, Vol. 17, No. 1. (6 January 2007), pp. 117-125. by Eva K. Freyhult, Jonathan P. Bollback, Paul P. Gardner posted to homology rna by evaf on 2008-06-11 21:42:12 as along with 12 people and 2 groups parnell natstreet druvus jfr eckart_bindewald ppgardne gpalidwor dchughes aswin bjhaugen jayster4 yoanjacquemin G4ID Genetics-of-Gambling
	RNAbor: a web server for RNA structural neighbors. [My Copy] Nucleic Acids Res (25 May 2007) by Eva Freyhult, Vincent Moulton, Peter Clote posted to rna structure by evaf on 2008-06-11 21:39:21 as along with 2 people and 2 groups marcius sebastien_vigneau BioinfoCIPF SGU-CIPF
	Predicting RNA structure using mutual information. [My Copy] Appl Bioinformatics, Vol. 4, No. 1. (2005), pp. 53-59. by E. Freyhult, V. Moulton, P. Gardner posted to bioinformatics rna structure by evaf on 2006-01-12 15:11:18 as along with 4 people and 2 groups marcius eckart_bindewald eweaver arcticrasta BioinfoCIPF SGU-CIPF
	Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide. [My Copy] In RNA Biochemistry and Biotechnology (1999) by D. M. &. D. T. Zuker edited by J. B. &. B. Barciszewski posted to rna secondary_structure by evaf on 2005-05-02 08:55:07 as along with 1 person guxiyou
	Modelling 'evo-devo' with RNA. [My Copy] Bioessays, Vol. 24, No. 12. (December 2002), pp. 1164-1177. by W. Fontana posted to rna by evaf on 2005-04-06 15:31:53 as along with 3 people rklancer alexisgallagher eckart_bindewald
	RNA folding and unfolding. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 374-379. by B. Onoa, I. Tinoco posted to rna rna_folding by evaf on 2005-04-06 15:29:06 as along with 7 people and 3 groups rb_india marcius arcticrasta condon Hosna emidio_capriotti apop beta BioinfoCIPF SGU-CIPF
	Reduced contact order and RNA folding rates. [My Copy] J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1359-1365. by T. R. Sosnick, T. Pan posted to rna rna_folding by evaf on 2005-04-06 15:25:44 as along with 2 people and 2 groups marcius emidio_capriotti BioinfoCIPF SGU-CIPF
	RNA folding: models and perspectives. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 309-316. by T. R. Sosnick, T. Pan posted to fold rna rna_folding by evaf on 2005-04-06 15:25:08 as along with 3 people and 2 groups marcius Hosna austin BioinfoCIPF SGU-CIPF
	Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15310-15315. by A. Xayaphoummine, T. Bucher, F. Thalmann, H. Isambert posted to pseudoknot rna secondary_structure by evaf on 2005-04-06 12:21:14 as along with 6 people and 3 groups austin marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
	RNA molecules with structure dependent functions are uniquely folded. [My Copy] Nucleic Acids Res, Vol. 30, No. 16. (15 August 2002), pp. 3574-3582. by S. Y. Le, K. Zhang, J. V. Maizel posted to rna secondary_structure by evaf on 2005-04-06 06:45:11 as
	Co-transcriptional folding is encoded within RNA genes. [My Copy] BMC Mol. Biol., Vol. 5, No. 1. (6 August 2004) by I. M. Meyer, I. Miklos posted to rna by evaf on 2005-03-18 08:09:02 as along with 5 people and 3 groups bpcusack marcius condon Hosna raylim beta BioinfoCIPF SGU-CIPF
	Plasticity, evolvability, and modularity in RNA. [My Copy] J Exp Zool, Vol. 288, No. 3. (15 October 2000), pp. 242-283. by L. W. Ancel, W. Fontana posted to rna secondary_structure by evaf on 2005-03-14 10:01:30 as along with 2 people antonkratz amorgan
	Vienna RNA Secondary Structure Package [My Copy] posted to rna secondary_structure by evaf on 2005-03-11 06:49:41 as
	Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. [My Copy] Nucleic acids research, Vol. 9, No. 1. (10 January 1981), pp. 133-148. by M. Zuker, P. Stiegler posted to rna secondary_structure by evaf on 2005-03-10 21:23:49 as along with 11 people and 2 groups rb_india NicholasErho saunders agrobledo gzm55 heliopais marcius arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
	Prediction of RNA secondary structure by energy minimization. [My Copy] Methods Mol Biol, Vol. 25 (1994), pp. 267-294. by M. Zuker posted to rna secondary_structure by evaf on 2005-03-10 21:23:45 as along with 1 person arcticrasta
	The European ribosomal RNA database. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by Jan Wuyts, Guy Perrière, Yves Van De Peer posted to database rna rrna by evaf on 2005-03-10 21:23:41 as
	Complete suboptimal folding of RNA and the stability of secondary structures. [My Copy] Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165. by S. Wuchty, W. Fontana, I. L. Hofacker, P. Schuster posted to rna secondary_structure suboptimal by evaf on 2005-03-10 21:23:36 as along with 1 person mtw
	No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution. [My Copy] Nucleic Acids Res, Vol. 27, No. 24. (15 December 1999), pp. 4816-4822. by C. Workman, A. Krogh posted to dinucleotide energy mrna rna shuffle by evaf on 2005-03-10 21:23:32 as
	The genome sequence of Schizosaccharomyces pombe. [My Copy] Nature, Vol. 415, No. 6874. (21 February 2002), pp. 871-880. by V. Wood, R. Gwilliam, M. A. Rajandream, et al.M. Lyne, R. Lyne, A. Stewart, J. Sgouros, N. Peat, J. Hayles, S. Baker, D. Basham, S. Bowman, K. Brooks, D. Brown, S. Brown, T. Chillingworth, C. Churcher, M. Collins, R. Connor, A. Cronin, P. Davis, T. Feltwell, A. Fraser, S. Gentles, A. Goble, N. Hamlin, D. Harris, J. Hidalgo, G. Hodgson, S. Holroyd, T. Hornsby, S. Howarth, E. J. Huckle, S. Hunt, K. Jagels, K. James, L. Jones, M. Jones, S. Leather, S. McDonald, J. McLean, P. Mooney, S. Moule, K. Mungall, L. Murphy, D. Niblett, C. Odell, K. Oliver, S. O'Neil, D. Pearson, M. A. Quail, E. Rabbinowitsch, K. Rutherford, S. Rutter, D. Saunders, K. Seeger, S. Sharp, J. Skelton, M. Simmonds, R. Squares, S. Squares, K. Stevens, K. Taylor, R. G. Taylor, A. Tivey, S. Walsh, T. Warren, S. Whitehead, J. Woodward, G. Volckaert, R. Aert, J. Robben, B. Grymonprez, I. Weltjens, E. Vanstreels, M. Rieger, M. Schäfer, S. Müller-Auer, C. Gabel, M. Fuchs, A. Düsterhöft, C. Fritzc, E. Holzer, D. Moestl, H. Hilbert, K. Borzym, I. Langer, A. Beck, H. Lehrach, R. Reinhardt, T. M. Pohl, P. Eger, W. Zimmermann, H. Wedler, R. Wambutt, B. Purnelle, A. Goffeau, E. Cadieu, S. Dréano, S. Gloux, V. Lelaure, S. Mottier, F. Galibert, S. J. Aves, Z. Xiang, C. Hunt, K. Moore, S. M. Hurst, M. Lucas, M. Rochet, C. Gaillardin, V. A. Tallada, A. Garzon, G. Thode, R. R. Daga, L. Cruzado, J. Jimenez, M. Sánchez, F. del Rey, J. Benito, A. Domínguez, J. L. Revuelta, S. Moreno, J. Armstrong, S. L. Forsburg, L. Cerutti, T. Lowe, W. R. McCombie, I. Paulsen, J. Potashkin, G. V. Shpakovski, D. Ussery, B. G. Barrell, P. Nurse, L. Cerrutti posted to genome rna yeast by evaf on 2005-03-10 21:23:28 as along with 1 person Cortel
	Conserved RNA secondary structures in Picornaviridae genomes. [My Copy] Nucleic Acids Res, Vol. 29, No. 24. (15 December 2001), pp. 5079-5089. by C. Witwer, S. Rauscher, I. L. Hofacker, P. F. Stadler posted to rna secondary_structure virus by evaf on 2005-03-10 21:23:20 as along with 1 person ilh
	Fast and reliable prediction of noncoding RNAs. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2454-2459. by S. Washietl, I. L. Hofacker, P. F. Stadler posted to non-coding rna by evaf on 2005-03-10 21:23:10 as along with 14 people and 3 groups rb_india NicholasErho antonkratz balaji heliopais gangli dayjm marcius eckart_bindewald tardigrade dquest Eonwe ilh raylim tulip BioinfoCIPF SGU-CIPF
	Evaluating the predictability of conformational switching in RNA. [My Copy] Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1573-1582. by B. Voss, C. Meyer, R. Giegerich posted to riboswitch rna by evaf on 2005-03-10 21:23:06 as
	Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element. [My Copy] RNA, Vol. 9, No. 9. (September 2003), pp. 1084-1097. by A. G. Vitreschak, D. A. Rodionov, A. A. Mironov, M. S. Gelfand posted to regulatory_element rna by evaf on 2005-03-10 21:23:02 as
	Identification of 13 novel human modification guide RNAs. [My Copy] Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003), pp. 6543-6551. by P. Vitali, H. Royo, H. Seitz, J. P. Bachellerie, A. Hüttenhofer, J. Cavaillé posted to rna snorna by evaf on 2005-03-10 21:22:58 as along with 1 person mtagaya
	The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems. [My Copy] EMBO Rep, Vol. 1, No. 1. (July 2000), pp. 18-23. by G. Varani, W. H. McClain posted to rna wobble by evaf on 2005-03-10 21:22:54 as along with 2 people allmensch eskay
	Discovering regulatory elements in non-coding sequences by analysis of spaced dyads. [My Copy] Nucleic Acids Res, Vol. 28, No. 8. (15 April 2000), pp. 1808-1818. by J. van Helden, A. F. Rios, J. Collado-Vides posted to non-coding regulatory_element rna by evaf on 2005-03-10 21:22:50 as
	Improved parameters for prediction of RNA structure. [My Copy] Cold Spring Harb Symp Quant Biol, Vol. 52 (1987), pp. 123-133. by D. H. Turner, N. Sugimoto, J. A. Jaeger, C. E. Longfellow, S. M. Freier, R. Kierzek posted to rna secondary_structure by evaf on 2005-03-10 21:22:46 as
	RNA structure prediction. [My Copy] Annu Rev Biophys Biophys Chem, Vol. 17 (1988), pp. 167-192. by D. H. Turner, N. Sugimoto posted to rna secondary_structure by evaf on 2005-03-10 21:22:41 as
	A GC-rich sequence within the 5' untranslated region of human basonuclin mRNA inhibits its translation. [My Copy] Gene, Vol. 237, No. 1. (3 September 1999), pp. 35-44. by W. Tang, H. Tseng posted to regulatory_element rna utr by evaf on 2005-03-10 21:22:29 as
	Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs. [My Copy] Bioessays, Vol. 26, No. 8. (August 2004), pp. 833-843. by M. Suzuki, Y. Hayashizaki posted to coding non-coding rna by evaf on 2005-03-10 21:22:25 as
	Compilation of tRNA sequences and sequences of tRNA genes. [My Copy] Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 148-153. by M. Sprinzl, C. Horn, M. Brown, A. Ioudovitch, S. Steinberg posted to rna trna by evaf on 2005-03-10 21:22:20 as along with 2 people and 1 group condon Hosna beta
	Comparing multiple RNA secondary structures using tree comparisons. [My Copy] Comput Appl Biosci, Vol. 6, No. 4. (October 1990), pp. 309-318. by B. A. Shapiro, K. Z. Zhang posted to rna secondary_structure by evaf on 2005-03-10 21:22:12 as
	An algorithm for comparing multiple RNA secondary structures. [My Copy] Comput Appl Biosci, Vol. 4, No. 3. (August 1988), pp. 387-393. by B. A. Shapiro posted to rna secondary_structure by evaf on 2005-03-10 21:22:05 as
	Major identity determinants in the "augmented D helix" of tRNA(Glu) from Escherichia coli. [My Copy] J Mol Biol, Vol. 256, No. 4. (8 March 1996), pp. 685-700. by S. Sekine, O. Nureki, K. Sakamoto, et al.T. Niimi, M. Tateno, M. Go, T. Kohno, A. Brisson, J. Lapointe, S. Yokoyama posted to rna trna by evaf on 2005-03-10 21:22:00 as
	mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences. [My Copy] Nucleic Acids Res, Vol. 27, No. 7. (1 April 1999), pp. 1578-1584. by W. Seffens, D. Digby posted to energy mrna rna shuffle by evaf on 2005-03-10 21:21:56 as
	From sequences to shapes and back: a case study in RNA secondary structures. [My Copy] Proc R Soc Lond B Biol Sci, Vol. 255, No. 1344. (22 March 1994), pp. 279-284. by P. Schuster, W. Fontana, P. F. Stadler, I. L. Hofacker posted to rna secondary_structure by evaf on 2005-03-10 21:21:52 as along with 4 people and 2 groups NicholasErho marcius ilh mtw BioinfoCIPF SGU-CIPF
	Estimating the contributions of selection and self-organization in RNA secondary structure. [My Copy] J Mol Evol, Vol. 49, No. 1. (July 1999), pp. 76-83. by E. A. Schultes, P. T. Hraber, T. H. LaBean posted to rna secondary_structure by evaf on 2005-03-10 21:21:48 as
	Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. [My Copy] Nucleic Acids Res, Vol. 32, No. 14. (2004), pp. 4281-4296. by P. Schattner, W. A. Decatur, C. A. Davis, M. Ares, M. J. Fournier, T. M. Lowe posted to rna snorna yeast by evaf on 2005-03-10 21:21:37 as along with 2 people arcticrasta mtagaya
	An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots [My Copy] Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 58-66. by Jianhua Ruan, Gary D. Stormo, Weixiong Zhang posted to pseudoknot rna by evaf on 2005-03-10 21:21:16 as along with 4 people and 1 group heliopais arcticrasta condon Hosna beta
	Switching tRNA(Gln) identity from glutamine to tryptophan. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 8. (15 April 1992), pp. 3463-3467. by M. J. Rogers, T. Adachi, H. Inokuchi, D. Söll posted to rna trna by evaf on 2005-03-10 21:21:04 as
	Discrimination between glutaminyl-tRNA synthetase and seryl-tRNA synthetase involves nucleotides in the acceptor helix of tRNA. [My Copy] Proc Natl Acad Sci U S A, Vol. 85, No. 18. (September 1988), pp. 6627-6631. by M. J. Rogers, D. Söll posted to rna trna by evaf on 2005-03-10 21:20:59 as
	Staphylococcal transfer ribonucleic acids. II. Sequence analysis of isoaccepting glycine transfer ribonucleic acids IA and IB from Staphylococcus epidermidis Texas 26. [My Copy] J Biol Chem, Vol. 249, No. 15. (10 August 1974), pp. 4787-4796. by R. J. Roberts posted to rna trna by evaf on 2005-03-10 21:20:56 as
	A dynamic programming algorithm for RNA structure prediction including pseudoknots1☆ [My Copy] Journal of Molecular Biology, Vol. 285, No. 5. (05 February 1999), pp. 2053-2068. by Elena Rivas, Sean R. Eddy posted to pseudoknot rna secondary_structure by evaf on 2005-03-10 21:20:52 as along with 13 people and 1 group rb_india NicholasErho gzm55 mjoach balajis eckart_bindewald arcticrasta dquest condon Hosna jarasch physics guxiyou beta
	Computational identification of noncoding RNAs in E. coli by comparative genomics. [My Copy] Curr Biol, Vol. 11, No. 17. (4 September 2001), pp. 1369-1373. by E. Rivas, R. J. Klein, T. A. Jones, S. R. Eddy posted to non-coding rna by evaf on 2005-03-10 21:20:47 as along with 7 people and 4 groups NicholasErho myrtilus marcius eckart_bindewald arcticrasta dquest bsmagic Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	Noncoding RNA gene detection using comparative sequence analysis [My Copy] BMC Bioinformatics, Vol. 2, No. 1. (2001), 8. by Elena Rivas, Sean Eddy posted to comparative non-coding rna by evaf on 2005-03-10 21:20:43 as along with 8 people and 2 groups stharward NicholasErho balaji myrtilus marcius eckart_bindewald arcticrasta jarasch BioinfoCIPF SGU-CIPF
	Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs [My Copy] Bioinformatics, Vol. 16, No. 7. (1 July 2000), pp. 583-605. by Elena Rivas, Sean R. Eddy posted to rna secondary_structure by evaf on 2005-03-10 21:20:39 as along with 14 people and 4 groups rb_india homonecloco NicholasErho thegoose2 tharris marcius eckart_bindewald eweaver andersbj arcticrasta mtagaya dquest Eonwe ilh C. elegans / WormBase microRNA BioinfoCIPF SGU-CIPF
	The language of RNA: a formal grammar that includes pseudoknots [My Copy] Bioinformatics, Vol. 16, No. 4. (1 April 2000), pp. 334-340. by Elena Rivas, Sean R. Eddy posted to pseudoknot rna by evaf on 2005-03-10 21:20:35 as along with 5 people and 2 groups heliopais gemammr condon Hosna cthachuk GEB beta
	Generic properties of combinatory maps: neutral networks of RNA secondary structures. [My Copy] Bull Math Biol, Vol. 59, No. 2. (March 1997), pp. 339-397. by C. Reidys, P. F. Stadler, P. Schuster posted to neural_network rna secondary_structure by evaf on 2005-03-10 21:20:31 as along with 3 people VGreiff gzm55 alexisgallagher
	Prediction of signal recognition particle RNA genes. [My Copy] Nucleic Acids Res, Vol. 30, No. 15. (1 August 2002), pp. 3368-3377. by M. Regalia, M. A. Rosenblad, T. Samuelsson posted to rna srp by evaf on 2005-03-10 21:20:22 as
	Structural and compositional features of untranslated regions of eukaryotic mRNAs. [My Copy] Gene, Vol. 205, No. 1-2. (31 December 1997), pp. 95-102. by G. Pesole, S. Liuni, G. Grillo, C. Saccone posted to mrna rna utr by evaf on 2005-03-10 21:20:06 as

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