eweaver's proteomics [44 articles] Export

Recent papers added to eweaver's library classified by the tag proteomics. You can also see everyone's proteomics.

	Proteomics to study genes and genomes [My Copy] Nature, Vol. 405, No. 6788. (15 June 2000), pp. 837-846. by Akhilesh Pandey, Matthias Mann posted to proteomics by eweaver on 2006-04-27 15:30:30 as along with 4 people and 1 group jmeppley fisherp Jporci fgibson GelML
	Membrane proteins: the 'Wild West' of structural biology. [My Copy] Trends Biochem Sci, Vol. 28, No. 3. (March 2003), pp. 137-144. by J. Torres, T. J. Stevens, M. Samsó posted to proteomics by eweaver on 2006-04-03 15:08:46 as along with 2 people and 2 groups marcius rsantana BioinfoCIPF SGU-CIPF
	Protein function prediction via graph kernels. [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005) by Karsten M. M. Borgwardt, Cheng, Stefan Schönauer, Sv N. V. Vishwanathan, Alex J. J. Smola, Hans-Peter P. Kriegel posted to proteomics by eweaver on 2006-02-22 04:16:51 as along with 9 people and 4 groups ajbattle MarcoAlvarez tmmurali okarsligil vavi lfriedl marcius kt wnpx kdl Bioinformatics BioinfoCIPF SGU-CIPF
	Inferring functional information from domain co-evolution [My Copy] Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 40-49. by Yohan Kim, Mehmet Koyuturk, Umut Topkara, Ananth Grama, Shankar Subramaniam posted to proteomics by eweaver on 2006-01-23 18:46:01 as along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
	The Relationship Between Sequence and Interaction Divergence in Proteins [My Copy] Journal of Molecular Biology, Vol. 332, No. 5. (3 October 2003), pp. 989-998. by Patrick Aloy, Hugo Ceulemans, Alexander Stark, Robert B. Russell posted to proteomics by eweaver on 2005-12-22 19:12:07 as along with 4 people and 2 groups ana pansapiens Evangelia RebeccaHamer structural_bioinformatics Bioinformatics
	STRING: a database of predicted functional associations between proteins. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 258-261. by Christian von Mering, Martijn Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel posted to proteomics by eweaver on 2005-12-22 19:07:55 as along with 4 people and 2 groups aceol kuhn lfriedl nickluscombe kdl EBI-regulation
	Computational genetics: finding protein function by nonhomology methods [My Copy] Current Opinion in Structural Biology, Vol. 10, No. 3. (01 June 2000), pp. 359-365. by E. Marcotte posted to proteomics by eweaver on 2005-12-22 19:07:21 as along with 1 person flbarroso
	Confirmation of data mining based predictions of protein function. [My Copy] Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1110-1118. by R. D. King, P. H. Wise, A. Clare posted to bioalgorithms proteomics by eweaver on 2005-12-22 19:06:18 as
	Automated prediction of protein function and detection of functional sites from structure. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 41. (12 October 2004), pp. 14754-14759. by F. Pazos, M. J. Sternberg posted to proteomics by eweaver on 2005-12-22 19:03:39 as along with 2 people kaarsinogen chrn
	Identification of the Human Methylmalonyl-CoA Racemase Gene Based on the Analysis of Prokaryotic Gene Arrangements. IMPLICATIONS FOR DECODING THE HUMAN GENOME [My Copy] J. Biol. Chem., Vol. 276, No. 40. (28 September 2001), pp. 37194-37198. by Thomas A. Bobik, Madeline E. Rasche posted to proteomics by eweaver on 2005-12-22 17:09:12 as
	Predictome: a database of putative functional links between proteins. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 306-309. by J. C. Mellor, I. Yanai, K. H. Clodfelter, J. Mintseris, C. DeLisi posted to proteomics by eweaver on 2005-12-22 17:06:39 as along with 1 person and 1 group lfriedl kdl
	Who's your neighbor? New computational approaches for functional genomics. [My Copy] Nat Biotechnol, Vol. 18, No. 6. (June 2000), pp. 609-613. by M. Y. Galperin, E. V. Koonin posted to proteomics by eweaver on 2005-12-22 17:05:41 as along with 4 people bicko jmeppley balajis bluto
	SNAPping up Functionally Related Genes Based on Context Information: A Colinearity-free Approach [My Copy] Journal of Molecular Biology, Vol. 311, No. 4. (August 2001), pp. 639-656. by G. Kolesov, H. W. Mewes, D. Frishman posted to proteomics by eweaver on 2005-12-22 17:03:21 as
	Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. [My Copy] Genome Res, Vol. 11, No. 3. (March 2001), pp. 356-372. by Y. I. Wolf, I. B. Rogozin, A. S. Kondrashov, E. V. Koonin posted to proteomics by eweaver on 2005-12-22 17:00:24 as along with 2 people and 2 groups ziquje barry structural_bioinformatics Bioinformatics
	Seventy-five percent accuracy in protein secondary structure prediction. [My Copy] Proteins, Vol. 27, No. 3. (March 1997), pp. 329-335. by D. Frishman, P. Argos posted to proteomics by eweaver on 2005-12-07 08:29:14 as along with 1 person wenhan
	Protein ranking: from local to global structure in the protein similarity network. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 17. (27 April 2004), pp. 6559-6563. by J. Weston, A. Elisseeff, D. Zhou, C. S. Leslie, W. S. Noble posted to proteomics by eweaver on 2005-12-07 08:26:46 as along with 4 people amonika gulkur yama_tah j3xucite
	Combining pairwise sequence similarity and support vector machines for remote protein homology detection [My Copy] In RECOMB '02: Proceedings of the sixth annual international conference on Computational biology (2002), pp. 225-232. by Li Liao, William S. Noble posted to proteomics by eweaver on 2005-12-03 05:48:10 as
	An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1853-1858. by Robel Y. Kahsay, Guang Gao, Li Liao posted to proteomics by eweaver on 2005-12-03 05:45:53 as
	How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues. [My Copy] Biophys J, Vol. 88, No. 3. (March 2005), pp. 1552-1559. by T. Haliloglu, O. Keskin, B. Ma, R. Nussinov posted to proteomics by eweaver on 2005-11-30 10:12:49 as along with 4 people and 2 groups barry baaden aqeel choonpeng structural_bioinformatics Bioinformatics
	Screening and selection methods for large-scale analysis of protein function. [My Copy] Angew Chem Int Ed Engl, Vol. 41, No. 23. (2 December 2002), pp. 4402-4425. by H. Lin, V. W. Cornish posted to proteomics by eweaver on 2005-11-30 10:12:34 as along with 1 person betainverse
	Automatic annotation of protein function. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 267-274. by Alfonso Valencia posted to proteomics by eweaver on 2005-11-27 10:37:14 as along with 7 people and 2 groups timhubbard sgoetz tjimenez dimka kuhn marcius bootsy BioinfoCIPF SGU-CIPF
	Domain combinations in archaeal, eubacterial and eukaryotic proteomes. [My Copy] J Mol Biol, Vol. 310, No. 2. (6 July 2001), pp. 311-325. by G. Apic, J. Gough, S. A. Teichmann posted to proteomics by eweaver on 2005-11-27 10:32:12 as along with 4 people Schmidtc tny cjeans gulkur
	Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context [My Copy] Genome (2001) by Y. I. Wolf, I. B. Rogozin, A. S. Kondrashov, E. V. Koonin posted to proteomics by eweaver on 2005-11-11 22:06:59 as
	FSSA: a novel method for identifying functional signatures from structural alignments [My Copy] Bioinformatics (2005) by K. Wang, R. Samudrala posted to proteomics by eweaver on 2005-11-11 21:01:11 as
	Exploitation of Protein Structural Information for Divergent Protein Function Prediction with Machine Learning Approach [My Copy] ffas.burnham.org by Y. Lin, J. Case, L. R. Tang, H. K. K. Pao, J. Burnside posted to machine_learning proteomics by eweaver on 2005-11-11 21:01:11 as
	Functional genome annotation through phylogenomic mapping [My Copy] Nature Biotechnology (2005) by B. S. Srinivasan, N. B. Caberoy, G. Suen, et al.R. G. Taylor, R. Shah, F. Tengra, B. S. Goldman, A. Garza, R. Welch posted to proteomics by eweaver on 2005-11-11 21:01:11 as
	Predicting protein function from protein/protein interaction data: a probabilistic approach [My Copy] Bioinformatics (2003) by S. Letovsky, S. Kasif posted to proteomics by eweaver on 2005-11-11 21:01:11 as
	Prediction of human protein function according to Gene Ontology categories [My Copy] Bioinformatics (2003) by L. J. Jensen, R. Gupta, H. H. Staerfeldt, S. Brunak posted to proteomics by eweaver on 2005-11-11 21:01:11 as
	Structural genomics and its importance for gene function analysis [My Copy] Nat. Biotechnol (2000) by J. Skolnick, J. S. Fetrow, A. Kolinski posted to proteomics by eweaver on 2005-11-11 21:01:11 as
	The Proteome Analyst Suite of Automated Function Prediction Tools [My Copy] ffas.burnham.org by R. Eisner, A. Fyshe, B. Pearcy, L. Pireddu posted to proteomics by eweaver on 2005-11-11 21:01:11 as
	Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on MEME Motifs Outperform Prosite Patterns and Profiles on Peptidase Familes [My Copy] JCIS (2002) by X. Wang, D. Schroeder, D. Dobbs, V. Honavar posted to machine_learning proteomics by eweaver on 2005-11-11 21:01:11 as
	Genome-Scale Gene Function Prediction Using Multiple Sources of High-Throughput Data in Yeast... [My Copy] Omics A Journal of Integrative Biology (2004) by T. Joshi, Y. Chen, J. M. Becker, N. Alexandrov, D. Xu posted to proteomics by eweaver on 2005-11-11 21:01:11 as
	Using a mixture of probabilistic decision trees for direct prediction of protein function [My Copy] RECOMB (2003) by U. Syed, G. Yona posted to machine_learning proteomics by eweaver on 2005-11-11 21:01:11 as
	Machine learning structural and functional proteomics [My Copy] IEEE Intelligent Systems, No. Special Issue on Intelligent.... (2002) by P. Baldi, G. Pollastri posted to machine_learning proteomics by eweaver on 2005-11-11 21:01:11 as
	Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to Glutaredoxins/Thioredoxins and T1 Ribonucleases [My Copy] J. Mol. Biol (1998) by J. S. Fetrow, J. Skolnick posted to proteomics by eweaver on 2005-11-11 21:01:10 as
	Automated annotation of microbial proteomes in SWISS-PROT [My Copy] Comput. Biol. Chem (2003) by A. Gattiker, K. Michoud, C. Rivoire, A. H. Auchincloss posted to db proteomics by eweaver on 2005-11-11 21:01:10 as
	Automated data-driven discovery of motif-based protein function classifiers [My Copy] Information Sciences (2003) by X. Wang, D. Schroeder, D. Dobbs, V. Honavar posted to machine_learning proteomics by eweaver on 2005-11-11 21:01:10 as
	The utility of different representations of protein sequence for predicting functional class [My Copy] Bioinformatics (2001) by R. D. King, A. Karwath, A. Clare, L. Dehaspe posted to proteomics by eweaver on 2005-11-11 21:01:10 as
	Analyzing protein function on a genomic scale: the importance of gold-standard positives and... [My Copy] Current Opinion in Microbiology (2004) by R. Jansen, M. Gerstein posted to proteomics by eweaver on 2005-11-11 21:01:10 as
	GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes [My Copy] BMC Bioinformatics (2004) by D. Martin, M. Berriman, G. Barton posted to metagenomics proteomics by eweaver on 2005-11-11 21:01:10 as
	Biological function made crystal clear- annotation of hypothetical proteins via structural genomics [My Copy] Current Opinion in Biotechnology (2000) by E. Eisenstein, G. L. Gilliland, O. Herzberg, J. Moult posted to proteomics by eweaver on 2005-11-11 21:01:10 as
	Filtering erroneous protein annotation [My Copy] Bioinformatics (2004) by D. Wieser, E. Kretschmann, R. Apweiler posted to proteomics by eweaver on 2005-11-11 21:01:10 as
	Automatic prediction of protein function [My Copy] Cell. Mol. Life Sci (2003) by B. Rost, J. Liu, R. Nair, K. O. Wrzeszczynski, Y. Ofran posted to proteomics by eweaver on 2005-11-11 21:01:10 as
	Learning Classifiers for Assigning Protein Sequences to Gene Ontology Functional Families [My Copy] Fifth International Conference on Knowledge Based Computer... (2004) by C. Andorf, A. Silvescu, D. Dobbs, V. Honavar posted to machine_learning proteomics by eweaver on 2005-11-11 21:01:10 as

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case_imported	44
proteomics	44
software	34
machine_learning	31
db	24
systems_biology	19
enzymes	17
metagenomics	15
pathway_prediction	12
bioalgorithms	10
barbara	8
protein_structure	8
pathway_general	5
rna	5
epsilon_proteobacteria	4
phylogenetics	4
interface_design	3
combinatorial_bioinformatics	3
applied_analysis	3
survey	2
zzz_missing	2
philosophy_of_bioscience	2
procedure	2
verification	1
data_extraction	1
campylobacterales	1
helicobacter_pylori	1
uncultivated_archaea	1
zzz_not_useful	1
kegg	1
visualization	1
sargasso	1
pharmaceuticals	1
prediction	1
gene_finding	1
books	1
bacteria	1
transfer	1
dbi	1
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eweaver's proteomics [44 articles] Export

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