eweaver's watchlist [more than 800 articles] Export

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	SBML2L(A)T(E)X: conversion of SBML files into human-readable reports. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1455-1456. by Andreas Dräger, Hannes Planatscher, Dieudonné Motsou Wouamba, et al.Adrian Schröder, Michael Hucka, Lukas Endler, Martin Golebiewski, Wolfgang Müller, Andreas Zell posted to systems_biology software markup latex by jfr on 2009-11-15 16:16:54 as along with 6 people and 1 group tonamswish sobolevnrm dullhunk guhjy nuin renatomilani baker-group
	Variable slope normalization of reverse phase protein arrays [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1384-1389. by E. Shannon Neeley, Steven M. Kornblau, Kevin R. Coombes, Keith A. Baggerly posted to proteomics normalization by jfr on 2009-11-15 15:01:37 as
	Introduction to proteomics. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 564 (2009), pp. 3-10. by Friedrich Lottspeich posted to proteomics by guhjy on 2009-11-15 02:53:39 as
	Membrane transport proteins of the malaria parasite [My Copy] Molecular Microbiology, Vol. 74, No. 3. (1 October 2009), pp. 519-528. by Rowena E. Martin, Hagai Ginsburg, Kiaran Kirk posted to vsa proteomics malaria by GeeSharpMinor on 2009-11-14 21:52:59 as
	Post-translational modifications in Plasmodium: more than you think! [My Copy] Molecular and biochemical parasitology, Vol. 168, No. 2. (8 December 2009), pp. 123-134. by Duk-Won Doug W. Chung, Nadia Ponts, Serena Cervantes, Karine G. Le Roch posted to proteomics malaria by GeeSharpMinor on 2009-11-14 21:51:03 as
	Bayesian statistical methods for genetic association studies. [My Copy] Nature reviews. Genetics, Vol. 10, No. 10. (01 October 2009), pp. 681-690. by Matthew Stephens, David J. Balding posted to statistical_method bioinformatics by Geknitics on 2009-11-14 02:36:50 as along with 23 people and 1 group shikin heliopais Zephyrus nuin matjes pkonings fastjoe23 guhjy maren gregdavisfromnj natstreet TRHvidsten zufar n00c lwaldron megraw rdiaz kimorley leliavski misonneh qayub daforerog druvus Journal picks
	The role of DNA shape in protein\|[ndash]\|DNA recognition [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1248-1253. by Remo Rohs, Sean M. West, Alona Sosinsky, Peng Liu, Richard S. Mann, Barry Honig posted to structure f1000 dna bioinformatics by renatomilani on 2009-11-13 22:17:44 as along with 7 people emptyhb sandersl Fernando_FF operon kintoki TRHvidsten djkt
	Computation for ChIP-seq and RNA-seq studies [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to transcriptome transcriptionfactor software rnaseq review nextgen chipseq bioinformatics by stubrown on 2009-11-13 14:46:47 as along with 13 people and 1 group hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais Orengo Group Journal Picks
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted to whole-genome-seq translocation somatic_mutations software nextgen gene-fusion deletions cnv bioinformatics by stubrown on 2009-11-13 14:44:29 as along with 10 people and 1 group dakelley fenghezi daed natstreet druvus sitalange qayub gdb jasontsai danmaclean Journal picks
	Transcript quantification with RNA-Seq data [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 13. (2009), P5. by Regina Bohnert, Jonas Behr, Gunnar Ratsch posted to bioinformatics by hzoltan on 2009-11-13 12:49:27 as along with 3 people jwfoley inesdesantiago heliopais
	Protein function prediction with the shortest path in functional linkage graph and boosting [My Copy] International Journal of Bioinformatics Research and Applications, Vol. 4, No. 4. (1 January 2008), pp. 375-384. by Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara posted to protein_function prediction_accuracy prediction ontology high-throughput go gene_ontology gene_expression_data function bioinformatics by davidmam on 2009-11-13 10:50:58 as
	The nature of systems biology. [My Copy] Trends in microbiology, Vol. 15, No. 1. (17 January 2007), pp. 45-50. by Frank J. Bruggeman, Hans V. Westerhoff posted to systems_biology by schwartzjmc on 2009-11-13 10:47:54 as along with 13 people and 5 groups babakap alorena eldan jwm jmeppley wnpx rabu aswin kengg dolhuis livingthingdan mkrajnak ptpases Radiation_Damage Stressosome SNE livingthing Plantandetc
	Every genome sequence needs a good map [My Copy] Genome Research, Vol. 19, No. 11. (13 November 2009), pp. 1925-1928. by Harris A. Lewin, Denis M. Larkin, Joan Pontius, Stephen J. O'Brien posted to map genomics genome_sequence bioinformatics alignment by davidmam on 2009-11-13 10:29:29 as along with 4 people neils jasontsai druvus natstreet
	multiplierz: an extensible API based desktop environment for proteomics data analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 October 2009), 364. by Jignesh Parikh, Manor Askenazi, Scott Ficarro, et al.Tanya Cashorali, James Webber, Nathaniel Blank, Yi Zhang, Jarrod Marto posted to tools proteomics peptide_sequence mass_spectrometry by davidmam on 2009-11-13 10:18:48 as along with 2 people renatomilani neilswainston
	A generic algorithm for layout of biological networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 375. by Falk Schreiber, Tim Dwyer, Kim Marriott, Michael Wybrow posted to network layout graph_layout generic_algorithm biological_networks bioinformatics by davidmam on 2009-11-13 10:07:48 as along with 3 people calderonv karthikraman ngehlenborg
	Myopic selection of novel information drives evolution [My Copy] Current Opinion in Biotechnology, Vol. 20, No. 4. (21 August 2009), pp. 504-508. by Antoine Danchin posted to synthetic-biology evolution enzyme_evolution enzyme enzy by pablocarb on 2009-11-13 09:57:03 as
	Using Grid technology for computationally intensive applied bioinformatics analyses. [My Copy] In silico biology, Vol. 6, No. 6. (2006), pp. 495-504. by Jorge Andrade, Lisa Berglund, Mathias Uhlén, Jacob Odeberg posted to grid bioinformatics by pekrau on 2009-11-13 09:33:58 as
	A whole-genome bioinformatics approach to selection of antigens for systematic antibody generation. [My Copy] Proteomics, Vol. 8, No. 14. (July 2008), pp. 2832-2839. by Lisa Berglund, Erik Björling, Kalle Jonasson, et al.Johan Rockberg, Linn Fagerberg, Cristina Al-Khalili Szigyarto, Asa Sivertsson, Mathias Uhlén posted to proteomics databases bioinformatics by pekrau on 2009-11-13 09:32:13 as along with 1 person niallhaslam
	A genecentric Human Protein Atlas for expression profiles based on antibodies. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 10. (1 October 2008), pp. 2019-2027. by Lisa Berglund, Erik Björling, Per Oksvold, et al.Linn Fagerberg, Anna Asplund, Cristina Al-Khalili A. Szigyarto, Anja Persson, Jenny Ottosson, Henrik Wernérus, Peter Nilsson, Emma Lundberg, Asa Sivertsson, Sanjay Navani, Kenneth Wester, Caroline Kampf, Sophia Hober, Fredrik Pontén, Mathias Uhlén posted to proteomics databases bioinformatics by pekrau on 2009-11-13 09:31:40 as along with 2 people daed guhjy
	XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 279. by Johannes Wagener, Ola Spjuth, Egon Willighagen, Jarl Wikberg posted to web_service software bioinformatics by operon on 2009-11-13 08:14:31 as along with 11 people and 1 group dswan brianb vagoskar CameronNeylon walshtp daforerog mchelen barriot nuin dullhunk druvus Bioinformatics
	Systems Biology from a Yeast Omics Perspective. [My Copy] FEBS letters (7 November 2009) by Michael Snyder, Jennifer E. Gallagher posted to yeast systems_biology by karthikraman on 2009-11-13 07:21:41 as
	A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML [My Copy] Cluster Computing and the Grid, IEEE International Symposium on In Cluster Computing and the Grid, 2008. CCGRID '08. 8th IEEE International Symposium on, Vol. 0 (30 May 2008), pp. 728-734. by Marco Pagni, J? Hau, Heinz Stockinger posted to software programming bioinformatics by operon on 2009-11-13 02:24:17 as along with 2 people n00c pautasso
	The effect of sequencing errors on metagenomic gene prediction [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 520. by Katharina Hoff posted to bioinformatics by ppgardne to the group Journal picks on 2009-11-12 21:55:18 as
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to yeast transcriptomics proteomics networks metabolism gene-networks by pmendes on 2009-11-12 20:37:57 as along with 14 people and 3 groups myzhang rsaito isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar thomaskelder shikin Bioinformatics steinmetzlab GeneGo
	Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing [My Copy] Brief Bioinform (27 October 2009), bbp046. by David S. Horner, Giulio Pavesi, Tiziana Castrignano, et al.Paolo D. De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole posted to sequencing genome bioinformatics by renatomilani on 2009-11-12 19:49:35 as along with 1 person druvus
	The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms [My Copy] Brief Bioinform (11 November 2009), bbp054. by Gil Alterovitz, Taro Muso, Marco F. Ramoni posted to synthetic review bioinformatics by renatomilani on 2009-11-12 19:48:56 as along with 2 people Vincent_Rouilly druvus
	MCP ups the ante by mandating raw-data deposition [My Copy] Journal of Proteome Research, Vol. 8, No. 11. (6 November 2009), pp. 4887-4888. by Katie Cottingham posted to repository proteomics by brianb on 2009-11-12 18:17:13 as
	Comparative analysis of OFFGel, strong cation exchange with pH gradient, and RP at high pH for first-dimensional separation of peptides from a membrane-enriched protein fraction [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Bruno Manadas, Jane A. English, Kieran J. Wynne, David R. Cotter, Michael J. Dunn posted to proteomics electrophoresis chromatography by brianb on 2009-11-12 18:14:15 as
	Windshield splatter analysis with the Galaxy metagenomic pipeline [My Copy] Genome Research, Vol. 19, No. 11. (9 November 2009), pp. 2144-2153. by Sergei Kosakovsky Pond, Samir Wadhawan, Francesca Chiaromonte, et al.Guruprasad Ananda, Wen-Yu Chung, James Taylor, Anton Nekrutenko posted to software community-genomics bioinformatics by jmeppley on 2009-11-12 15:33:33 as along with 8 people and 2 groups seb1 Katje djkt operon neils idonaldson jgill kshameer microbiology_nijmegen iSEEM
	Why Most Published Research Findings Are False [My Copy] PLoS Med, Vol. 2, No. 8. (30 August 2005), pp. 696-701. by John P. A. Ioannidis posted to for:arne systems-biology statistics scientific-method science research reproducibility philosophy experimentation experiment-design experiment-description epidemiology culture biology bioinformatics by lord_weldaan on 2009-11-12 12:15:47 as along with 89 people and 13 groups Horduna sona rubenroa aaltenburger lafuente alexhakkinen NIlz polivares yyfwuhan zzb3886 amargoli CulCog jenniferwilms Stew eshirdel ckai1 monkare scmelton LSK thegoose johntdelaney virolog olberd robertlischke cobi flieder arsyed mrt2k9 schoeband steve3001 paleorthid pawelsobko mzkbnt memming mutesa donnachie apgaylard haloin bhengeveld yangjustinc jago Tomste richardh daforerog kristinchapman FeltonM7675 pengchy ajaymalik gbodner neteler mixedman Zephyrus rklancer guhjy sebpaquet garyfeng monod Borelli jmeppley chad_davis Najamuddin irinas indigoviolet mwyarbro ddahlem dullhunk madhadron balabu jiyu msierk Imat lmi_swap chenlc03 biblio24 pratap kevinemamy cjeans feipan arne suizan jasonbobe austin lonettma buggle dnugent Malc elsbury shoshin achinerarias LIBrain Bioinformatics - CRUK raftlondon STS Method_Engineering_Services Convention on Knowledge Commons Anesthesia and Acute Pain UCD SILS IS40340 Research Practice Roswell Cancer Crosstalk ReadingLab EisenLab Sciences_communication_societe dIEMoSIRIS
	Quantification of Membrane Proteins Using Nonspecific Protease Digestions. [My Copy] Journal of proteome research, Vol. 0, No. 0. (9 November 2009) by Maria Bendz, Mirja Carlsson C. Möller, Giorgio Arrigoni, et al.Asa Wåhlander, Roberto Stella, Salvatore Cappadona, Fredrik Levander, Lars Hederstedt, Peter James posted to proteomics membrane by guhjy on 2009-11-12 09:29:59 as along with 1 person neils
	Doing sequence analysis with your printer [My Copy] Comput. Appl. Biosci., Vol. 9, No. 4. (1 August 1993), pp. 421-426. by D. B. Searls posted to software curiosity bioinformatics 1993 by hpaces on 2009-11-12 06:44:35 as
	[Systems biology of cancer] [My Copy] Médecine sciences : M/S, Vol. 25, No. 6-7. (l 2009), pp. 601-607. by Emmanuel Barillot, Laurence Calzone, Andrei Zinovyev posted to systems_biology review cancer by Borelli on 2009-11-11 15:17:29 as along with 1 person karthikraman
	iQuantitator: A tool for protein expression inference using iTRAQ [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 342. by John Schwacke, Elizabeth Hill, Edward Krug, Susana C. Walters, Kevin Schey posted to tools proteomics itraq by davidmam on 2009-11-11 14:44:55 as
	[Systems biology: from molecular networks to personalized medicine] [My Copy] Médecine sciences : M/S, Vol. 25, No. 6-7. (l 2009), pp. 547-548. by Denis Thieffry posted to systems_biology medicine by karthikraman on 2009-11-11 14:44:04 as
	[Systems biology: the multiscale organization of living systems] [My Copy] Médecine sciences : M/S, Vol. 25, No. 6-7. (l 2009), pp. 585-587. by Annick Lesne posted to systems_biology complexity by karthikraman on 2009-11-11 14:43:52 as
	[Medical applications of systems biology] [My Copy] Médecine sciences : M/S, Vol. 25, No. 6-7. (l 2009), pp. 588-600. by Jacques Demongeot posted to systems_biology medicine by karthikraman on 2009-11-11 14:43:12 as
	Systems biology reveals new strategies for personalizing cancer medicine and confirms the role of PTEN in resistance to trastuzumab. [My Copy] Cancer research, Vol. 69, No. 16. (15 August 2009), pp. 6713-6720. by Dana Faratian, Alexey Goltsov, Galina Lebedeva, et al.Anatoly Sorokin, Stuart Moodie, Peter Mullen, Charlene Kay, In Hwa H. Um, Simon Langdon, Igor Goryanin, David J. Harrison posted to systems_biology cancer by karthikraman on 2009-11-11 14:42:31 as along with 4 people schwartzjmc bertelsen ericrpaquet frohike
	Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes [My Copy] Mol. BioSyst. (2009) by Mohan Babu, Gabriel Musso, Javier J. Diaz-Mejia, Gareth Butland, Jack F. Greenblatt, Andrew Emili posted to systems_biology gene_networks by karthikraman on 2009-11-11 14:42:19 as
	Enzyme kinetics and computational modeling for systems biology. [My Copy] Methods in enzymology, Vol. 467 (2009), pp. 583-599. by Pedro Mendes, Hanan Messiha, Naglis Malys, Stefan Hoops posted to systems_biology kinetics by karthikraman on 2009-11-11 09:35:43 as
	Reverse engineering a signaling network using alternative inputs. [My Copy] PloS one, Vol. 4, No. 10. (2009) by Hiromasa Tanaka, Tau-Mu M. Yi posted to systems_biology signalling by karthikraman on 2009-11-11 09:35:18 as
	A systems view of host defense [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 999-1001. by Daniel E. Zak, Alan Aderem posted to systems_biology host_defense host-pathogen by karthikraman on 2009-11-11 09:31:50 as
	Industrial systems biology. [My Copy] Biotechnology and bioengineering (4 November 2009) by José Manuel M. Otero, Jens Nielsen posted to systems_biology review metabolic_engineering by karthikraman on 2009-11-11 09:29:59 as
	Algebraic models of biochemical networks. [My Copy] Methods in enzymology, Vol. 467 (2009), pp. 163-196. by Reinhard Laubenbacher, Abdul Salam S. Jarrah posted to systems_biology mathematical_models boolean by karthikraman on 2009-11-11 09:28:57 as
	Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 14. (2009), S6. by Vincent Smith, Simon Rycroft, Kehan Harman, Ben Scott, David Roberts posted to social research bioinformatics biodiversity by operon on 2009-11-11 03:53:05 as along with 3 people gthorisson dullhunk dgovoni
	Designing Efficient User-Friendly Biological Data Management Systems [My Copy] OMICS: A Journal of Integrative Biology, Vol. 7, No. 1. (January 2003), pp. 113-115. by Zoe Lacroix posted to bioinformatics by tjtaylor on 2009-11-10 22:25:10 as
	UniMaP: finding unique mass and peptide signatures in the human proteome [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3035-3037. by Anastasia Alexandridou, George T. Tsangaris, Konstantinos Vougas, Konstantina Nikita, George Spyrou posted to spec proteomics mass by davidmam on 2009-11-10 18:01:51 as along with 1 person brianb
	Improving peptide identification with single-stage mass spectrum peaks [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2969-2974. by Zengyou He, Weichuan Yu posted to spec proteomics mass by davidmam on 2009-11-10 18:00:05 as along with 2 people neilswainston nuin
	The Biomolecular Interaction Network Database and related tools 2005 update [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_1. (1 January 2005), pp. D418-424. by C. Alfarano, C. E. Andrade, K. Anthony, et al.N. Bahroos, M. Bajec, K. Bantoft, D. Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, I. Donaldson, D. Dorairajoo, M. J. Dumontier, M. R. Dumontier, V. Earles, R. Farrall, H. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, R. Haw, A. Hrvojic, L. Hurrell, R. Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, B. Parker, G. Pintilie, R. Pirone, J. J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, K. Snyder, R. Stasiuk, D. Strumpf, B. Tuekam, S. Tao, Z. Wang, M. White, R. Willis, C. Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, S. Zhang, K. Zheng, T. Pawson, B. F. F. Ouellette, C. W. V. Hogue posted to protein-protein bioinformatics by flbarroso on 2009-11-10 16:49:30 as
	Proteomics: quantitative and physical mapping of cellular proteins [My Copy] Trends in Biotechnology, Vol. 17, No. 3. (1 March 1999), pp. 121-127. by W. Blackstock posted to proteomics electrophoresis by flbarroso on 2009-11-10 16:48:39 as

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case_imported	44
proteomics	44
software	34
machine_learning	31
db	24
systems_biology	19
enzymes	17
metagenomics	15
pathway_prediction	12
bioalgorithms	10
barbara	8
protein_structure	8
pathway_general	5
rna	5
epsilon_proteobacteria	4
phylogenetics	4
applied_analysis	3
combinatorial_bioinformatics	3
interface_design	3
philosophy_of_bioscience	2
procedure	2
survey	2
zzz_missing	2
bacteria	1
blast	1
books	1
campylobacterales	1
data_extraction	1
dbi	1
gene_finding	1
helicobacter_pylori	1
kegg	1
pharmaceuticals	1
prediction	1
sargasso	1
transfer	1
uncultivated_archaea	1
verification	1
visualization	1
zzz_not_useful	1

eweaver's watchlist [more than 800 articles] Export

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