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farhat's library [171 articles]

Recent papers added to farhat's library.
  • Mapping short DNA sequencing reads and calling variants using mapping quality scores.
    Genome research (19 August 2008)
    by Heng Li, Jue Ruan, Richard Durbin
    posted to alignment sequencing short-read by farhat on 2008-08-27 17:48:32 as ** along with 2 people bpb gdb
  • Reward, motivation, and emotion systems associated with early-stage intense romantic love.
    J Neurophysiol, Vol. 94, No. 1. (July 2005), pp. 327-337.
    by A Aron, H Fisher, DJ Mashek, G Strong, H Li, LL Brown
    posted to no-tag by farhat on 2008-08-19 06:15:37 as ** along with 3 people and 1 group brian suizan lilith Functional_Imaging
  • The neural correlates of maternal and romantic love.
    NeuroImage, Vol. 21, No. 3. (March 2004), pp. 1155-1166.
    by A Bartels, S Zeki
    posted to no-tag by farhat on 2008-08-19 06:15:23 as **
  • Human fronto-mesolimbic networks guide decisions about charitable donation
    PNAS (9 October 2006), 0604475103.
    by Jorge Moll, Frank Krueger, Roland Zahn, Matteo Pardini, Ricardo de Oliveira-Souza, Jordan Grafman
    posted to no-tag by farhat on 2008-08-19 06:15:06 as ** along with 1 person mauricelee
  • Neural correlates of trust
    Proceedings of the National Academy of Sciences, Vol. 104, No. 50. (11 December 2007), pp. 20084-20089.
    by Frank Krueger, Kevin Mccabe, Jorge Moll, Nikolaus Kriegeskorte, Roland Zahn, Maren Strenziok, Armin Heinecke, Jordan Grafman
    posted to no-tag by farhat on 2008-08-19 06:14:49 as ** along with 3 people and 2 groups adriandefroment suizan kaniko Functional_Imaging Neuroscience
  • Discrete coding of reward probability and uncertainty by dopamine neurons.
    Science, Vol. 299, No. 5614. (21 March 2003), pp. 1898-1902.
    by CD Fiorillo, PN Tobler, W Schultz
    posted to no-tag by farhat on 2008-08-19 06:14:30 as ** along with 8 people and 4 groups klouie stefanherzog benoithv ifat krista phystor awooga nishiokov Glimcher_Lab CLIC logical_cognition ACS-Basel
  • Selecting a Maximally Informative Set of Single-Nucleotide Polymorphisms for Association Analyses Using Linkage Disequilibrium
    The American Journal of Human Genetics, Vol. 74, No. 1. (January 2004), pp. 106-120.
    by Christopher S Carlson, Michael A Eberle, Mark J Rieder, Qian Yi, Leonid Kruglyak, Deborah A Nickerson
    posted to no-tag by farhat on 2008-08-13 18:41:22 as ***
  • Quality and completeness of SNP databases.
    Nature genetics, Vol. 33, No. 4. (April 2003), pp. 457-458.
    by DE Reich, SB Gabriel, D Altshuler
    posted to no-tag by farhat on 2008-08-13 18:23:15 as **
  • notes Attention and awareness in stage magic: turning tricks into research
    Vol. advanced online publication (30 July 2008)
    by Stephen L Macknik, Mac King, James Randi, Apollo Robbins, Teller, John Thompson, Susana Martinez-Conde
    posted to magic neuroscience by farhat on 2008-08-13 03:10:44 as ***
  • Large scale genotype-phenotype correlation analysis based on phylogenetic trees.
    Bioinformatics (31 January 2007)
    by Farhat Habib, Andrew D D Johnson, Ralf Bundschuh, Daniel Janies
    posted to no-tag by farhat on 2008-08-06 01:22:47 as read along with 4 people djkt shigepong smbe2008 balicea
  • Believe it or not, QTLs are accurate!
    Trends Plant Sci, Vol. 11, No. 5. (May 2006), pp. 213-216.
    by AH Price
    posted to no-tag by farhat on 2008-06-13 20:52:42 as ** along with 1 person ArtemPankin
  • Whole-genome sequencing and variant discovery in C. elegans.
    Nat Methods (20 January 2008)
    by Ladeana W W Hillier, Gabor T T Marth, Aaron R R Quinlan, David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I I Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J J Magrini, Ryan J J Richt, Sacha N N Sander, Donald A A Stewart, Michael Stromberg, Eric F F Tsung, Todd Wylie, Tim Schedl, Richard K K Wilson, Elaine R R Mardis
    posted to no-tag by farhat on 2008-06-10 23:35:46 as ** along with 3 people orzenil mdimon tharris
  • novoSNP, a novel computational tool for sequence variation discovery.
    Genome Res, Vol. 15, No. 3. (March 2005), pp. 436-442.
    by S Weckx, J Del-Favero, R Rademakers, L Claes, M Cruts, P De Jonghe, C Van Broeckhoven, P De Rijk
    posted to no-tag by farhat on 2008-06-10 16:18:27 as ** along with 1 person Ayest
  • A general approach to single-nucleotide polymorphism discovery.
    Nat Genet, Vol. 23, No. 4. (December 1999), pp. 452-456.
    by GT Marth, I Korf, MD Yandell, RT Yeh, Z Gu, H Zakeri, NO Stitziel, L Hillier, PY Kwok, WR Gish
    posted to no-tag by farhat on 2008-06-10 15:37:07 as **** along with 3 people and 1 group gpappas Ayest azazello gatech-compgenomics
  • Evolution of genomes, host shifts and the geographic spread of SARS-CoV and related coronaviruses
    Cladistics, Vol. 24, No. 2. (2008), pp. 111-130.
    by Daniel Janies, Farhat Habib, Boyan Alexandrov, Andrew Hill, Diego Pol
    posted to no-tag by farhat on 2008-06-04 05:45:20 as **
  • Extending Genomics to Natural Communities and Ecosystems
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 492-495.
    by Thomas G Whitham, Stephen P Difazio, Jennifer A Schweitzer, Stephen M Shuster, Gery J Allan, Joseph K Bailey, Scott A Woolbright
    posted to no-tag by farhat on 2008-06-04 02:01:48 as ** along with 6 people and 3 groups natstreet ArtemPankin neteler brant jago jlgreen Khavkin's lab Green Lab iSEEM
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
    posted to no-tag by farhat on 2008-05-29 23:00:04 as read along with 23 people and 5 groups bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin azazello beatrizfernandez wenhan xingxu erbon tpreeprem carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
  • Advanced sequencing technologies: methods and goals.
    Nature reviews. Genetics, Vol. 5, No. 5. (May 2004), pp. 335-344.
    by J Shendure, RD Mitra, C Varma, GM Church
    posted to no-tag by farhat on 2008-05-29 21:09:24 as ** along with 1 person bozdagd
  • Life with 6000 genes.
    Science, Vol. 274, No. 5287. (25 October 1996)
    by A Goffeau, BG Barrell, H Bussey, RW Davis, B Dujon, H Feldmann, F Galibert, JD Hoheisel, C Jacq, M Johnston, EJ Louis, HW Mewes, Y Murakami, P Philippsen, H Tettelin, SG Oliver
    posted to no-tag by farhat on 2008-05-29 20:39:35 as **** along with 6 people sdinka Cortel rebeccahainess arcticrasta treangen yulian2108
  • Using quality scores and longer reads improves accuracy of Solexa read mapping
    BMC Bioinformatics, Vol. 9 (28 February 2008), 128.
    by Andrew D Smith, Zhenyu Xuan, Michael Q Zhang
    posted to sequencing short-read by farhat on 2008-05-28 21:10:45 as **** along with 5 people ghattem mdimon kmdaily heliopais caseybrown
  • The expanding transcriptome: the genome as the 'Book of Sand'
    The EMBO Journal, Vol. aop, No. current. (02 March 2006)
    by Luis, Juan Valcarcel
    posted to no-tag by farhat on 2008-05-16 20:55:56 as *** along with 4 people and 1 group balajis nickluscombe JeffR100 heliopais EBI-regulation
  • Velvet: Algorithms for De Novo Short Read Assembly Using De Bruijn Graphs
    Genome Res. (18 March 2008), gr.074492.107.
    by Daniel Zerbino, Ewan Birney
    posted to no-tag by farhat on 2008-05-16 20:27:57 as *** along with 7 people and 1 group stajich iris42 tharris Neeperando sharpton GustavoLacerda gdb Berkeley Mycology
  • Markers and mapping: we are all geneticists now
    New Phytologist, Vol. 137, No. 1. (1997), pp. 165-177.
    by NEIL Jones, Helen Ougham, Howard Thomas
    posted to no-tag by farhat on 2008-05-16 17:49:01 as ***
  • The generic genome browser: a building block for a model organism system database.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1599-1610.
    by LD Stein, C Mungall, S Shu, M Caudy, M Mangone, A Day, E Nickerson, JE Stajich, TW Harris, A Arva, S Lewis
    posted to no-tag by farhat on 2008-05-14 18:44:22 as *** along with 7 people and 1 group Cortel indigoviolet dquest stajich natstreet dullhunk tharris EisenLab
  • Entropy estimates of small data sets
    (29 Apr 2008)
    by Juan A Bonachela, Haye Hinrichsen, Miguel A Munoz
    posted to no-tag by farhat on 2008-05-13 17:38:40 as *** along with 5 people josepe ansobol tjpp dpf orahcio
  • Genomic mapping by fingerprinting random clones: a mathematical analysis.
    Genomics, Vol. 2, No. 3. (April 1988), pp. 231-239.
    by ES Lander, MS Waterman
    posted to no-tag by farhat on 2008-05-06 16:25:57 as ** along with 4 people and 1 group ggrot RMGraze joshuashen bluto Bioinformatics
  • On Covariances from Overlapping Samples
    The American Statistician, Vol. 38, No. 4. (1984), pp. 288-289.
    by SM Tam
    posted to no-tag by farhat on 2008-05-05 17:09:14 as **
  • SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by R Andreson, T Puurand, M Remm
    posted to no-tag by farhat on 2008-04-24 18:48:07 as *** along with 1 person jyuh
  • A Case Study of Gender Bias at the Postdoctoral Level in Physics, and its Resulting Impact on the Academic Career Advancement of Females
    (17 Apr 2008)
    by S Towers
    posted to no-tag by farhat on 2008-04-19 07:31:03 as **
  • A Malaria Fingerprint in the Human Genome?
    N Engl J Med (16 April 2008), NEJMe0801414.
    by Johanna P Daily, Pardis Sabeti
    posted to no-tag by farhat on 2008-04-18 20:53:35 as ***
  • Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data
    BMC Bioinformatics, Vol. 8 (08 June 2007), 191.
    by Thomas Hladish, Vivek Gopalan, Chengzhi Liang, Weigang Qiu, Peter Yang, Arlin Stoltzfus
    posted to no-tag by farhat on 2008-04-07 08:26:30 as read along with 1 person jyuh
  • Bookworms versus nerds: Exposure to fiction versus non-fiction, divergent associations with social ability, and the simulation of fictional social worlds
    Journal of Research in Personality, Vol. 40, No. 5. (October 2006), pp. 694-712.
    by Raymond A Mar, Keith Oatley, Jacob Hirsh, Dela, Jordan B Peterson
    posted to no-tag by farhat on 2008-04-04 05:19:27 as ***
  • Sorghum genome sequencing by methylation filtration.
    PLoS Biol, Vol. 3, No. 1. (January 2005)
    by JA Bedell, MA Budiman, A Nunberg, RW Citek, D Robbins, J Jones, E Flick, T Rholfing, J Fries, K Bradford, J McMenamy, M Smith, H Holeman, BA Roe, G Wiley, IF Korf, PD Rabinowicz, N Lakey, WR McCombie, JA Jeddeloh, RA Martienssen
    posted to no-tag by farhat on 2008-03-20 05:50:22 as **
  • Efficient parsimony-based methods for phylogenetic network reconstruction
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e123-e128.
    by Jin, Guohua, Nakhleh, Luay, Snir, Sagi, Tuller, Tamir
    posted to no-tag by farhat on 2008-03-07 05:07:18 as ****
  • Jane: Suggesting Journals, Finding Experts.
    Bioinformatics (28 January 2008)
    by Martijn J J Schuemie, Jan A A Kors
    posted to no-tag by farhat on 2008-03-04 11:35:06 as ** along with 7 people jyuh chad_davis dullhunk idonaldson renatomilani Barend merj
  • Analyzing micro-RNA expression using microarrays.
    Methods Enzymol, Vol. 411 (2006), pp. 14-34.
    by TS Davison, CD Johnson, BF Andruss
    posted to no-tag by farhat on 2008-02-27 21:54:21 as read
  • Aspects of the design and analysis of high-dimensional SNP studies for disease risk estimation
    Biostatistics, Vol. 7, No. 3. (July 2006), pp. 339-354.
    by Prentice, L Ross, Lihong Qi
    posted to no-tag by farhat on 2008-02-27 08:41:10 as **
  • Comparative analysis of haplotype association mapping algorithms.
    BMC Bioinformatics, Vol. 7 (2006)
    by P McClurg, MT Pletcher, T Wiltshire, AI Su
    posted to no-tag by farhat on 2007-11-24 18:02:51 as **
  • Common sense for our genomes
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 783-784.
    by Steven E Brenner
    posted to no-tag by farhat on 2007-10-24 03:57:54 as *** along with 9 people skhadar dchughes dullhunk wenhan jasonbobe ibuch barriot psique hpaces
  • Whole-genome sequence assembly for mammalian genomes: Arachne 2.
    Genome Res, Vol. 13, No. 1. (January 2003), pp. 91-96.
    by DB Jaffe, J Butler, S Gnerre, E Mauceli, K Lindblad-Toh, JP Mesirov, MC Zody, ES Lander
    posted to no-tag by farhat on 2007-10-16 18:15:57 as read along with 4 people and 1 group bpb indigoviolet AaronDarling wenhan EisenLab
  • TRAF1-C5 as a Risk Locus for Rheumatoid Arthritis -- A Genomewide Study.
    N Engl J Med (5 September 2007)
    by Robert M M Plenge, Mark Seielstad, Leonid Padyukov, Annette T T Lee, Elaine F F Remmers, Bo Ding, Anthony Liew, Houman Khalili, Alamelu Chandrasekaran, Leela R L R Davies, Wentian Li, Adrian K S K Tan, Carine Bonnard, Rick T H T Ong, Anbupalam Thalamuthu, Sven Pettersson, Chunyu Liu, Chao Tian, Wei V V Chen, John P P Carulli, Evan M M Beckman, David Altshuler, Lars Alfredsson, Lindsey A A Criswell, Christopher I I Amos, Michael F F Seldin, Daniel L L Kastner, Lars Klareskog, Peter K K Gregersen
    posted to no-tag by farhat on 2007-09-07 19:03:26 as ***
  • Varying environments can speed up evolution
    PNAS (14 August 2007), 0611630104.
    by Nadav Kashtan, Elad Noor, Uri Alon
    posted to evolution programming by farhat on 2007-08-16 09:30:22 as **** along with 5 people and 2 groups mattjb zwang cwr phreeza chrys ComplexAdaptiveSystems DSTO-CAS
  • Mining complex genotypic features for predicting HIV-1 drug resistance
    Bioinformatics (13 August 2007), btm353.
    by Hiroto Saigo, Takeaki Uno, Koji Tsuda
    posted to no-tag by farhat on 2007-08-14 13:19:23 as **** along with 1 person niallhaslam
  • Network medicine--from obesity to the "diseasome".
    N Engl J Med, Vol. 357, No. 4. (26 July 2007), pp. 404-407.
    by AL Barabási
    posted to genome-wide genotype human nucleotide obesity polymorphism snp by farhat on 2007-08-05 01:06:47 as *** along with 3 people jyuh dejori nolodie
  • A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e139.
    by Konstantin B Zeldovich, Peiqiu Chen, Boris E Shakhnovich, Eugene I Shakhnovich
    posted to evolution protein by farhat on 2007-08-05 00:58:26 as ** along with 6 people and 1 group BioNica grahamc cjeans zwang Jporci biinins ParkinsonLab_at_MaRS
  • Replicating genotypeâphenotype associations
    Nature, Vol. 447, No. 7145. (06 June 2007), pp. 655-660.
    by Stephen J Chanock, Teri Manolio, Michael Boehnke, Eric Boerwinkle, David J Hunter, Gilles Thomas, Joel N Hirschhorn, Goncalo Abecasis, David Altshuler, Joan E Bailey-Wilson, Lisa D Brooks, Lon R Cardon, Mark Daly, Peter Donnelly, Joseph F Fraumeni, Nelson B Freimer, Daniela S Gerhard, Chris Gunter, Alan E Guttmacher, Mark S Guyer, Emily L Harris, Josephine Hoh, Robert Hoover, Augustine C Kong, Kathleen R Merikangas, Cynthia C Morton, Lyle J Palmer, Elizabeth G Phimister, John P Rice, Jerry Roberts, Charles Rotimi, Margaret A Tucker, Kyle J Vogan, Sholom Wacholder, Ellen M Wijsman, Deborah M Winn, Francis S Collins
    posted to association genome-wide genotype phenotype study by farhat on 2007-08-05 00:23:25 as **** along with 1 person jyuh
  • GENETICS: More Means of Regulating Genes
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1126-1127.
    by Armelle Corpet, Genevieve Almouzni
    posted to epigenetic genetic by farhat on 2007-07-25 21:40:21 as ***
  • Inferring Phylogenies
    (04 September 2003)
    by Joseph Felsenstein
    posted to no-tag by farhat on 2007-07-25 16:29:54 as **** along with 4 people and 2 groups bayesian dpollard cmm dlizcano EisenLab FAB-lab
  • Polymorphisms in the Il12b gene affect structure and expression of IL-12 in NOD and other autoimmune-prone mouse strains
    Genes and Immunity, Vol. 3, No. 3. (May 2002), pp. 151-157.
    by SI Ymer, D Huang, G Penna, S Gregori, K Branson, L Adorini, G Morahan
    posted to bibtex-import by farhat on 2007-07-24 15:37:15 as read
  • Association of interleukin-12 p40 gene 3'-untranslated region polymorphism and outcome of HCV infection
    World J Gastroenterol, Vol. 10, No. 16. (August 2004), pp. 2330-2333.
    by Li M Yin, Wan F Zhu, Lai Wei, Xiao Y Xu, De G Sun, Yan B Wang, Wen M Fan, Min Yu, Xiu L Tian, Qi X Wang, Yan Gao, Hui Zhuang
    posted to bibtex-import by farhat on 2007-07-24 15:37:15 as read
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