The Sequence Alignment/Map format and SAMtools Export

@article{citeulike:4778506, abstract = {Summary: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compact in size, efficient in random access and is the format in which alignments from the 1000 Genomes Project are released. SAMtools implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments. Availability: http://samtools.sourceforge.net Contact: rd@sanger.ac.uk 10.1093/bioinformatics/btp352}, author = {Li, Heng and Handsaker, Bob and Wysoker, Alec and Fennell, Tim and Ruan, Jue and Homer, Nils and Marth, Gabor and Abecasis, Goncalo and Durbin, Richard and 1000 Genome Project Data Processing Subgroup}, citeulike-article-id = {4778506}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp352}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/25/16/2078.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/25/16/2078.full.pdf}, citeulike-linkout-3 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/16/2078}, citeulike-linkout-4 = {http://view.ncbi.nlm.nih.gov/pubmed/19505943}, citeulike-linkout-5 = {http://www.hubmed.org/display.cgi?uids=19505943}, doi = {10.1093/bioinformatics/btp352}, issn = {1460-2059}, journal = {Bioinformatics}, month = {August}, number = {16}, pages = {2078--2079}, posted-at = {2009-06-17 13:22:52}, priority = {2}, title = {The Sequence Alignment/Map format and SAMtools}, url = {http://dx.doi.org/10.1093/bioinformatics/btp352}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:4778506 L3 - citeulike-article-id:4778506 N2 - Summary: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compact in size, efficient in random access and is the format in which alignments from the 1000 Genomes Project are released. SAMtools implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments. Availability: http://samtools.sourceforge.net Contact: rd@sanger.ac.uk 10.1093/bioinformatics/btp352 IS - 16 JF - Bioinformatics SN - 1460-2059 EP - 2079 TI - The Sequence Alignment/Map format and SAMtools VL - 25 SP - 2078 AU - Li, Heng AU - Handsaker, Bob AU - Wysoker, Alec AU - Fennell, Tim AU - Ruan, Jue AU - Homer, Nils AU - Marth, Gabor AU - Abecasis, Goncalo AU - Durbin, Richard AU - 1000 Genome Project Data Processing Subgroup PY - 2009/08/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp352 ER -