farhat's no-tag [98 articles] Export

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	Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W199-203. by Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole posted to no-tag by farhat on 2009-11-18 04:33:58 as along with 8 people Dulce wowalz coldmeadow djkt dquest xiaobeizhao dandaman bryankr
	W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3191-3193. by Victor X. Jin, Jeff Apostolos, Naga S. Nagisetty, Peggy J. Farnham posted to no-tag by farhat on 2009-11-18 04:16:46 as along with 3 people idonaldson nklee maximilianh
	MOODS: fast search for position weight matrix matches in DNA sequences [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3181-3182. by Janne Korhonen, Petri Martinmaki, Cinzia Pizzi, Pasi Rastas, Esko Ukkonen posted to no-tag by farhat on 2009-11-18 04:11:51 as along with 4 people and 2 groups Stew idonaldson ppgardne djkt Bioinformatics - CRUK Journal picks
	Genome analysis with inter-nucleotide distances [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3064-3070. by Vera Afreixo, Carlos A. C. Bastos, Armando J. Pinho, Sara P. Garcia, Paulo J. S. G. Ferreira posted to no-tag by farhat on 2009-11-18 03:35:40 as along with 3 people operon rschulz druvus
	Time to Organize the Bioinformatics Resourceome [My Copy] PLoS Comput Biol, Vol. 1, No. 7. (30 December 2005), e76. by Nicola Cannata, Emanuela Merelli, Russ B. Altman posted to no-tag by farhat on 2009-11-12 05:30:30 as along with 5 people and 1 group thegoose2 daforerog yas dullhunk tharris T_lab
	Divergence of exonic splicing elements after gene duplication and the impact on gene structures [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R120. by Zhenguo Zhang, Li Zhou, Ping Wang, et al.Yang Liu, Xianfeng Chen, Landian Hu, Xiangyin Kong posted to no-tag by farhat on 2009-11-08 12:16:43 as along with 3 people and 1 group yogita bdessailly bpcusack Orengo Group Journal Picks
	Highly specific gene silencing by artificial microRNAs in Arabidopsis. [My Copy] The Plant cell, Vol. 18, No. 5. (1 May 2006), pp. 1121-1133. by Rebecca Schwab, Stephan Ossowski, Markus Riester, Norman Warthmann, Detlef Weigel posted to no-tag by farhat on 2009-11-06 05:39:28 as along with 4 people and 1 group megraw natstreet cdawson braingrind GIG
	An Open Access Database of Genome-wide Association Results [My Copy] BMC Medical Genetics, Vol. 10, No. 1. (22 January 2009), 6. by Andrew Johnson, Christopher O'Donnell posted to no-tag by farhat on 2009-09-26 20:45:49 as along with 11 people and 2 groups ongenetics gderwin daforerog guhjy lptolik A_Olympia Zephyrus neils mchelen djkt akmanning logics of knowledge Roswell Cancer Crosstalk
	Reconstructing Indian population history [My Copy] Nature, Vol. 461, No. 7263. (24 September 2009), pp. 489-494. by David Reich, Kumarasamy Thangaraj, Nick Patterson, Alkes L. Price, Lalji Singh posted to no-tag by farhat on 2009-09-24 15:32:35 as along with 10 people and 1 group engelhardt Geknitics psique PaperCollector ommachi qayub daforerog neils djkt diomede Journal picks
	mGene: accurate SVM-based gene finding with an application to nematode genomes. [My Copy] Genome research, Vol. 19, No. 11. (29 November 2009), pp. 2133-2143. by Gabriele Schweikert, Alexander Zien, Georg Zeller, et al.Jonas Behr, Christoph Dieterich, Cheng Soon S. Ong, Petra Philips, Fabio De Bona, Lisa Hartmann, Anja Bohlen, Nina Krüger, Sören Sonnenburg, Gunnar Rätsch posted to no-tag by farhat on 2009-09-17 06:55:29 as along with 4 people rshe dakelley kshameer natstreet
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to no-tag by farhat on 2009-09-16 13:16:12 as along with 17 people and 3 groups wowalz aprasad cajunsushi treangen druvus ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson yevishere isimpson structural_bioinformatics Bioinformatics EBI-regulation
	Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network [My Copy] Genome Biology, Vol. 10, No. 9. (03 September 2009), R91. by Bolan Linghu, Evan Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi posted to no-tag by farhat on 2009-09-09 20:32:02 as along with 6 people and 1 group mchelen fstrozzi bdessailly saket daforerog barriot Orengo Group Journal Picks
	Structural divergence between the human and chimpanzee genomes. [My Copy] Human genetics, Vol. 120, No. 6. (February 2007), pp. 759-778. by Hildegard Kehrer-Sawatzki, David N. Cooper posted to no-tag by farhat on 2009-09-09 06:02:42 as along with 1 person and 1 group hpaces Bioinformatics
	Identifying target sites for cooperatively binding factors. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 7. (July 2001), pp. 608-621. by D. GuhaThakurta, G. D. Stormo posted to no-tag by farhat on 2009-09-08 14:22:43 as along with 1 person dquest
	Genome-wide Co-occurrence of Promoter Elements Reveals a cis-Regulatory Cassette of rRNA Transcription Motifs in Saccharomyces cerevisiae [My Copy] Genome Research, Vol. 12, No. 11. (1 November 2002), pp. 1723-1731. by Priya Sudarsanam, Yitzhak Pilpel, George M. Church posted to no-tag by farhat on 2009-09-08 13:55:54 as
	BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2001), pp. 127-138. by X. Liu, D. L. Brutlag, J. S. Liu posted to no-tag by farhat on 2009-09-07 12:11:46 as along with 4 people isimpson wowalz heliopais dquest
	Identifying regulatory networks by combinatorial analysis of promoter elements [My Copy] Nature Genetics, Vol. 29, No. 2. (10 September 2001), pp. 153-159. by Yitzhak Pilpel, Priya Sudarsanam, George M. Church posted to no-tag by farhat on 2009-09-07 12:10:46 as along with 8 people and 1 group ipark-kaist imouthesmp troels_marstrand xwbcn wnpx noano koller windman83 Bioinformatics
	jPREdictor: a versatile tool for the prediction of cis-regulatory elements. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by Thomas Fiedler, Marc Rehmsmeier posted to no-tag by farhat on 2009-08-26 06:50:28 as
	CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 495. by Matthew S. Hestand, Michiel van Galen, Michel P. Villerius, Gert-Jan J. van Ommen, Johan T. den Dunnen, Peter A. 't Hoen posted to no-tag by farhat on 2009-08-21 07:00:19 as along with 9 people and 1 group avilella heliopais lptolik nklee nuin GustavoLacerda natstreet maximilianh druvus Ensembl Compara citations
	MATCH: A tool for searching transcription factor binding sites in DNA sequences. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3576-3579. by A. E. Kel, E. Gössling, I. Reuter, E. Cheremushkin, O. V. Kel-Margoulis, E. Wingender posted to no-tag by farhat on 2009-08-21 06:59:07 as along with 7 people setar aprasad reidy nklee danish_punter maximilianh emptyhb
	Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 2. (22 January 2002), pp. 757-762. by Benjamin P. Berman, Yutaka Nibu, Barret D. Pfeiffer, et al.Pavel Tomancak, Susan E. Celniker, Michael Levine, Gerald M. Rubin, Michael B. Eisen posted to no-tag by farhat on 2009-08-20 12:37:08 as along with 4 people and 1 group indigoviolet Stew emptyhb csdhwang EisenLab
	An index to quantify an individual's scientific research output [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 46. (15 November 2005), pp. 16569-16572. by J. E. Hirsch posted to no-tag by farhat on 2009-08-20 12:35:55 as along with 25 people and 1 group hughesro ajholanda diod biologyeditors jtownson msampson mcentyre wmatsui daforerog syah paulm A_Olympia stevanspringer cmmorel junwang4 dullhunk eyliu fitzgeraldp2 sergut amarois yakovenko aspen barriot sci91078 Asur FAB-lab
	The most influential journals: Impact Factor and Eigenfactor. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 17. (28 April 2009), pp. 6883-6884. by Alan Fersht posted to no-tag by farhat on 2009-08-20 12:35:01 as along with 8 people rdiaz inesdesantiago vpersy dullhunk daforerog marcio awest_y Maywa
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to no-tag by farhat on 2009-08-19 19:42:04 as along with 13 people and 2 groups heliopais dakelley lp2 megraw rdiaz torfinnnome djkt n00c druvus polivares stajich fpattyn jbhiatt BergmanLab Mycology
	Genome-wide analysis of Polycomb targets in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 6. (28 May 2006), pp. 700-705. by Yuri B. Schwartz, Tatyana G. Kahn, David A. Nix, et al.Xiao-Yong Li, Richard Bourgon, Mark Biggin, Vincenzo Pirrotta posted to no-tag by farhat on 2009-08-05 10:38:02 as along with 5 people humburg caseybrown RMGraze eukfn elzodw
	Optimal DNA sequence recognition by the Ultrabithorax homeodomain of Drosophila. [My Copy] The EMBO journal, Vol. 10, No. 5. (May 1991), pp. 1179-1186. by S. C. Ekker, K. E. Young, D. P. von Kessler, P. A. Beachy posted to no-tag by farhat on 2009-08-03 08:14:18 as
	Qualifying the relationship between sequence conservation and molecular function [My Copy] Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205. by Gregory M. Cooper, Christopher D. Brown posted to no-tag by farhat on 2009-06-25 07:22:22 as along with 7 people emptyhb aprasad brant djkt xingxu bpcusack nklee
	Profile hidden Markov models [My Copy] Bioinformatics, Vol. 14, No. 9. (1 October 1998), pp. 755-763. by S. R. Eddy posted to no-tag by farhat on 2009-06-22 10:37:38 as along with 14 people ldiambra BioNica druvus albert_swart miguel chad_davis eweaver dgront rabio cjeans suizan nklee yoanjacquemin ca3295
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to no-tag by farhat on 2009-06-18 09:39:42 as along with 26 people and 6 groups hzoltan agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2074-2075. by Kathryn E. Holt, Yik Y. Teo, Heng Li, et al.Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill posted to no-tag by farhat on 2009-06-18 08:42:04 as along with 7 people and 2 groups jsatkosk jandot stajich djkt guhjy sandfire druvus Mycology iSEEM
	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to no-tag by farhat on 2009-06-17 13:22:52 as along with 27 people and 2 groups cthachuk hzoltan seb1 heliopais urgi idonaldson GustavoLacerda stubrown cassj kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai operon AlexBateman chrisamiller nuin n00c natstreet sandfire druvus BergmanLab Journal picks
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted to no-tag by farhat on 2009-06-05 12:34:41 as along with 18 people and 1 group seb1 rdowell timflutre natstreet n00c yylin aprasad Gorzomagnificent guhjy dakelley reyez rec3141 operon bmduggan nuin AlexBateman djkt druvus Journal picks
	FlyBase: genomes by the dozen [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D486-D491. by Crosby, A. Madeline, Goodman, et al.L. Joshua, Strelets, B. Victor, Zhang, Peili, Gelbart, M. William posted to no-tag by farhat on 2009-06-05 12:33:59 as along with 1 person CharlesM
	The UBX-regulated network in the haltere imaginal disc of D. melanogaster. [My Copy] Dev Biol (10 November 2006) by Bradley M M. Hersh, Craig E E. Nelson, Samantha J J. Stoll, Jason E E. Norton, Thomas J J. Albert, Sean B B. Carroll posted to no-tag by farhat on 2009-06-04 09:34:37 as along with 1 person and 1 group adepace EisenLab
	Fewer permutations, more accurate P-values [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i161-168. by Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Ilya Shmulevich posted to no-tag by farhat on 2009-06-02 15:05:37 as along with 10 people and 1 group heliopais jfr rdiaz Ayest AlexBateman bmajoros idonaldson TRHvidsten djkt sameersoi Journal picks
	Widespread Genomic Signatures of Natural Selection in Hominid Evolution [My Copy] PLoS Genet, Vol. 5, No. 5. (8 May 2009), e1000471. by Graham Mcvicker, David Gordon, Colleen Davis, Phil Green posted to no-tag by farhat on 2009-05-27 10:19:39 as along with 8 people and 1 group bhengeveld jbhiatt gjuggler lp2 ilyashl stajich djkt sameersoi Mycology
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to no-tag by farhat on 2009-05-25 17:33:14 as along with 23 people and 4 groups Julien_Fayolle heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew humburg kshameer operon stajich GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics. [My Copy] BMC Bioinformatics, Vol. 5 (23 June 2004) by B. R. Zeeberg, J. Riss, D. W. Kane, et al.K. J. Bussey, E. Uchio, W. M. Linehan, J. C. Barrett, J. N. Weinstein posted to no-tag by farhat on 2009-05-21 15:23:37 as along with 8 people idonaldson fisherp Borelli fgibson neteler dullhunk dandaman frohike
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted to no-tag by farhat on 2009-05-19 11:04:57 as along with 20 people and 4 groups thegoose2 skembel alessandroparini tharris bpb aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
	Next-generation DNA sequencing. [My Copy] Nature biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to no-tag by farhat on 2009-05-15 20:01:18 as along with 46 people and 3 groups Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm idoerg mhz mmartin antonkratz jbhiatt yupu behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk Oxford Virology
	Identification of common molecular subsequences [My Copy] Journal of Molecular Biology, Vol. 147, No. 1. (25 March 1981), pp. 195-197. by T. Smith posted to no-tag by farhat on 2009-05-15 19:58:34 as along with 6 people stharward alessandroparini sebk BioNica jofiel elfar
	The essence of SNPs [My Copy] Gene, Vol. 234, No. 2. (8 July 1999), pp. 177-186. by A. Brookes posted to no-tag by farhat on 2009-05-14 11:58:10 as
	The UCSC Table Browser data retrieval tool. [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004) by D. Karolchik, A. S. Hinrichs, T. S. Furey, et al.K. M. Roskin, C. W. Sugnet, D. Haussler, W. J. Kent posted to no-tag by farhat on 2009-05-13 08:00:45 as along with 4 people aprasad miguel olympos heliopais
	QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (09 October 2006), 438. by Jifeng Tang, Ben Vosman, Roeland Voorrips, C. Gerard van der Linden, Jack Leunissen posted to no-tag by farhat on 2009-05-13 06:32:12 as along with 5 people and 1 group rs orzenil csrocha guhjy Ayest Bioinformatics
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to no-tag by farhat on 2009-04-29 12:33:38 as along with 38 people and 6 groups mpizbioinfo megraw Dulce wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Limitations and potentials of current motif discovery algorithms [My Copy] Nucl. Acids Res., Vol. 33, No. 15. (2 September 2005), pp. 4899-4913. by Jianjun Hu, Bin Li, Daisuke Kihara posted to no-tag by farhat on 2009-04-29 12:32:22 as along with 6 people and 1 group Dulce wowalz Stew bryankr gpalidwor dquest Bioinformatics - CRUK
	NR-grep: a fast and flexible pattern-matching tool [My Copy] Software: Practice and Experience, Vol. 31, No. 13. (2001), pp. 1265-1312. by Gonzalo Navarro posted to no-tag by farhat on 2009-04-24 14:39:42 as
	PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3608-3612. by Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisa, Graziano Pesole posted to no-tag by farhat on 2009-04-23 15:31:17 as along with 1 person dquest
	Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA [My Copy] Comput. Appl. Biosci., Vol. 6, No. 4. (1 October 1990), pp. 325-331. by Daniel Gautheret, Francois Major, Robert Cedergren posted to no-tag by farhat on 2009-04-23 15:25:48 as along with 1 person arcticrasta
	MotifViz: an analysis and visualization tool for motif discovery [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W420-423. by Yutao Fu, Martin C. Frith, Peter M. Haverty, Zhiping Weng posted to no-tag by farhat on 2009-04-23 15:25:02 as along with 2 people stharward dquest

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bibtex-import	123
genome-wide	3
association	2
evolution	2
genetic	2
genotype	2
human	2
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polymorphism	2
programming	2
protein	2
sequencing	2
short-read	2
snp	2
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am	1
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single	1
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substitution_matrices	1
taocp	1
techniques	1
therapy	1
toxin	1
treatment	1
virologic	1
wall	1

farhat's no-tag [98 articles] Export

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