felsani's library 29 articles Export

	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to bioinformatics deep-sequencing socs by felsani on 2009-02-17 18:28:02 as along with 17 people hzoltan bozdagd fishtank burak ThomasDOtto n00c mmartin natstreet adijr druvus xingxu azazello orzenil dswan pengchy cthachuk nuin
	High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi [My Copy] Nature Genetics, Vol. 40, No. 8. (27 July 2008), pp. 987-993. by Kathryn E. Holt, Julian Parkhill, Camila J. Mazzoni, et al.Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J. Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan posted to no-tag by felsani on 2009-02-17 18:23:20 as along with 10 people azazello usagi-kirin lewista treangen abizar druvus caseybrown pengchy Stew aconesa
	Inferring causal relationships among different histone modifications and gene expression [My Copy] Genome Research, Vol. 18, No. 8. (18 August 2008), pp. 1314-1324. by Hong Yu, Shanshan Zhu, Bing Zhou, Huiling Xue, Jing-Dong J. Han posted to chip-seq deep-sequencing gene_expression histone_modification transcriptional_regulation by felsani on 2009-02-17 18:14:09 as along with 10 people daveGerrard mingzhi suizifish fpattyn rschulz ptrobajo bootsy bcondon sharmapank klo
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted to deep-sequencing new-technology rna-seq stem_cells transcriptome by felsani on 2009-02-17 18:09:14 as along with 21 people hzoltan jwfoley heliopais jmanning2k stubrown cassj n00c burak natstreet poschm jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	Guilt beyond a reasonable doubt [My Copy] Nature Genetics, Vol. 39, No. 7., pp. 813-815. by David Altshuler, Mark Daly posted to no-tag by felsani on 2009-02-08 16:16:13 as along with 6 people jessopher hpiwowar vplagnol jasonbobe mimulus_99 jasonflannick
	Genome-wide in situ exon capture for selective resequencing [My Copy] Nat Genet, Vol. 39, No. 12. (04 November 2007), pp. 1522-1527. by Emily Hodges, Zhenyu Xuan, Vivekanand Balija, et al.Melissa Kramer, Michael N. Molla, Steven W. Smith, Christina M. Middle, Matthew J. Rodesch, Thomas J. Albert, Gregory J. Hannon, W. Richard McCombie posted to deep-sequencing microarray new-technology protocol by felsani on 2009-02-08 16:05:32 as along with 7 people jmanning2k dpsuslo8 vmsr kintoki giovanni jo_davies guhjy
	DNA methylation profiles in monozygotic and dizygotic twins [My Copy] Nat Genet, Vol. 41, No. 2. (18 January 2009), pp. 240-245. by Zachary A. Kaminsky, Thomas Tang, Sun-Chong Wang, et al.Carolyn Ptak, Gabriel H. T. Oh, Albert H. C. Wong, Laura A. Feldcamp, Carl Virtanen, Jonas Halfvarson, Curt Tysk, Allan F. McRae, Peter M. Visscher, Grant W. Montgomery, Irving I. Gottesman, Nicholas G. Martin, Art Petronis posted to dna_methylation by felsani on 2009-02-08 15:50:41 as along with 9 people and 1 group sf11 marywaye fenghezi jakekei suizifish clearbluespring Zephyrus misonneh djkt Roswell Cancer Crosstalk
	Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. [My Copy] Nature genetics (18 January 2009) by Bo Wen, Hao Wu, Yoichi Shinkai, Rafael A A. Irizarry, Andrew P P. Feinberg posted to cancer cell_differentiation histone_methylation stem_cells by felsani on 2009-02-08 15:47:25 as along with 3 people fenghezi inesdesantiago djkt
	The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores [My Copy] Nat Genet, Vol. 41, No. 2. (18 February 2009), pp. 178-186. by Rafael A. Irizarry, Christine Ladd-Acosta, Bo Wen, et al.Zhijin Wu, Carolina Montano, Patrick Onyango, Hengmi Cui, Kevin Gabo, Michael Rongione, Maree Webster, Hong Ji, James B. Potash, Sarven Sabunciyan, Andrew P. Feinberg posted to cancer colon_cancer dna_methylation methylome transcriptional_regulation transcriptome by felsani on 2009-02-08 15:43:52 as along with 5 people saravana jfr suizifish wpuszyk misonneh
	Repeatability of published microarray gene expression analyses [My Copy] Nature Genetics, Vol. 41, No. 2. (28 January 2008), pp. 149-155. by John P. A. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedin C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted to deep-sequencing microarray new-technology by felsani on 2009-02-08 15:39:05 as along with 21 people and 1 group hzoltan heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko jfr rdiaz zufar ptrobajo floatingpoint nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago djkt paszkows Roswell Cancer Crosstalk
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. [My Copy] Nucleic acids research, Vol. 36, No. 21. (1 December 2008), e141. by Peter A. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. Vossen, Renée X. de Menezes, Judith M. Boer, Gert-Jan J. van Ommen, Johan T. den Dunnen posted to deep-sequencing microarray new-technology transcriptome by felsani on 2009-02-08 11:18:25 as along with 24 people hzoltan GustavoLacerda stubrown GeeSharpMinor n00c guhjy hcoller daed poschm stsaft azazello jfr slevy03 usagi-kirin shikin coela cthachuk ojabado caseybrown abizar natstreet druvus rschulz pengchy
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted to deep-sequencing new-technology transcriptional_regulation transcriptome by felsani on 2009-02-08 11:10:35 as along with 22 people and 1 group hzoltan ajbattle stubrown jonilaserson tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu wimufi Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar Roswell Cancer Crosstalk
	Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2 September 2008), pp. 13081-13086. by Peter J. Campbell, Erin D. Pleasance, Philip J. Stephens, et al.Ed Dicks, Richard Rance, Ian Goodhead, George A. Follows, Anthony R. Green, P. Andy Futreal, Michael R. Stratton posted to cancer deep-sequencing new-technology by felsani on 2009-02-08 11:01:40 as along with 4 people Annab heliopais frohike gjuggler
	Advanced sequencing technologies and their wider impact in microbiology [My Copy] J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1518-1525. by Neil Hall posted to deep-sequencing microbiology review by felsani on 2009-02-08 10:57:05 as along with 5 people Pascalichouchou xingxu rschulz kmdaily bozdagd
	Adenovirus E1A targets p400 to induce the cellular oncoprotein Myc. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 16. (22 April 2008), pp. 6103-6108. by K. A. Tworkowski, A. A. Chakraborty, A. V. Samuelson, et al.Y. R. Seger, M. Narita, G. J. Hannon, S. W. Lowe, W. P. Tansey posted to e1a myc p400 transcriptional_regulation by felsani on 2009-01-10 17:40:54 as
	Adenoviral E1A function through Myc. [My Copy] Cancer research, Vol. 69, No. 1. (1 January 2009), pp. 6-9. by A. A. Chakraborty, W. P. Tansey posted to e1a myc review transcriptional_regulation by felsani on 2009-01-10 17:25:14 as
	The noncoding RNA, miR-126, suppresses the growth of neoplastic cells by targeting phosphatidylinositol 3-kinase signaling and is frequently lost in colon cancers. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 11. (November 2008), pp. 939-946. by Chunguang Guo, Jerome F. Sah, Lydia Beard, James K. Willson, Sanford D. Markowitz, Kishore Guda posted to cancer colon_cancer mir-126 mirna by felsani on 2009-01-10 17:20:25 as along with 2 people and 1 group tibbitts jfr microRNA
	Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2999-3004. by G. A. Calin, C. Sevignani, C. D. Dumitru, et al.T. Hyslop, E. Noch, S. Yendamuri, M. Shimizu, S. Rattan, F. Bullrich, M. Negrini, C. M. Croce posted to cancer mirna mirna_targets by felsani on 2009-01-10 17:16:28 as along with 6 people and 2 groups pengchy jfr mtagaya ealloza Garamonfok cbichsel microRNA BioinfoCIPF
	Measuring microRNAs: Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods [My Copy] BMC Biotechnology, Vol. 8 (11 September 2008), 69. by Robert A. Ach, Hui Wang, Bo Curry posted to microarray mirna protocol qpcr rna_preparation by felsani on 2009-01-10 17:14:54 as along with 7 people and 1 group mchelen jfr jsnowdon druvus pengchy guhjy giovenko microRNA
	A truth serum for cancer--microRNAs have major potential as cancer biomarkers. [My Copy] Cell research, Vol. 18, No. 10. (October 2008), pp. 983-984. by L. J. Chin, F. J. Slack posted to cancer mirna mirna_targets review signature by felsani on 2009-01-10 17:12:42 as along with 4 people and 1 group Zephyrus jfr valeriehilgers jsnowdon microRNA
	Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes [My Copy] Proceedings of the National Academy of Sciences (2008) by Michal Rabani, Michael Kertesz, Eran Segal posted to mirna mirna_targets software transcriptome by felsani on 2009-01-10 17:10:28 as along with 3 people and 2 groups jfr valeriehilgers erel10 microRNA BenosLab
	MicroRNA target site polymorphisms and human disease. [My Copy] Trends in genetics : TIG, Vol. 24, No. 10. (October 2008), pp. 489-497. by Praveen Sethupathy, Francis S. Collins posted to mirna mirna_targets review snp by felsani on 2009-01-10 17:06:18 as along with 5 people and 1 group songpku daforerog Zephyrus jfr guhjy microRNA
	Distinct microRNA expression profiles in acute myeloid leukemia with common translocations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 40. (7 October 2008), pp. 15535-15540. by Z. Li, J. Lu, M. Sun, et al.S. Mi, H. Zhang, R. T. Luo, P. Chen, Y. Wang, M. Yan, Z. Qian, M. B. Neilly, J. Jin, Y. Zhang, S. K. Bohlander, D. E. Zhang, R. A. Larson, M. M. Le Beau, M. J. Thirman, T. R. Golub, J. D. Rowley, J. Chen posted to cancer mirna signature transcriptome by felsani on 2009-01-10 17:03:29 as along with 1 person and 1 group jfr microRNA
	MicroRNAs in cancer. [My Copy] Annual review of pathology, Vol. 4 (25 September 2009), pp. 199-227. by Yong Sun S. Lee, Anindya Dutta posted to cancer mirna review transcriptome by felsani on 2009-01-10 16:58:31 as along with 5 people and 2 groups qfwills Zephyrus jfr guhjy jsnowdon Roswell Cancer Crosstalk microRNA
	Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. [My Copy] EMBO reports, Vol. 7, No. 12. (December 2006), pp. 1216-1222. by M. Lapidot, Y. Pilpel posted to transcriptome by felsani on 2009-01-10 16:55:23 as along with 3 people fhalbrit balicea shikin
	SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses [My Copy] Bioinformatics (6 January 2009), btp011. by Michael S. Barker, Katrina M. Dlugosch, Reddy, Sarah N. Amyotte, Loren H. Rieseberg posted to deep-sequencing software by felsani on 2009-01-10 01:45:24 as along with 5 people semrich jmeppley druvus jasontsai djkt
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to deep-sequencing illumina rna-seq by felsani on 2009-01-10 01:39:13 as along with 46 people and 2 groups cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda SIMR bioinformatics Mycology
	Most mammalian mRNAs are conserved targets of microRNAs [My Copy] Genome Research, Vol. 19, No. 1. (27 January 2009), pp. 92-105. by Robin C. Friedman, Kyle K. Farh, Christopher B. Burge, David P. Bartel posted to mirna by felsani on 2009-01-08 23:38:24 as along with 17 people and 2 groups hzoltan giovenko gbloeb sterovetta gdb guhjy jfr qfwills pengchy druvus heliopais dchughes valeriehilgers Stew fpattyn MSchipper samgj microRNA Bioinformatics - CRUK
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted to deep-sequencing new-technology by felsani on 2009-01-08 23:32:22 as along with 38 people and 3 groups hzoltan operon n00c kinestetika mtagaya jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus samjlord Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown iSEEM moernerlab Bioinformatics - CRUK

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deep-sequencing	12
mirna	9
cancer	8
transcriptome	8
new-technology	7
review	5
transcriptional_regulation	5
microarray	4
mirna_targets	4
colon_cancer	2
dna_methylation	2
e1a	2
myc	2
protocol	2
rna-seq	2
signature	2
software	2
stem_cells	2
bioinformatics	1
cell_differentiation	1
chip-seq	1
gene_expression	1
histone_methylation	1
histone_modification	1
illumina	1
methylome	1
microbiology	1
mir-126	1
p400	1
qpcr	1
rna_preparation	1
snp	1
socs	1

felsani's library 29 articles Export

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