SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses Export

@article{citeulike:3866050, abstract = {Summary: SCARF is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high quality reference sequences from related species. The program was created to knit together low coverage 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences. Availability: SCARF is freely available at http://msbarker.com/software.htm, and is released under the open source GPLv3 license (http://www.opensource.org/licenses/gpl-3.0.html). Contact: msbarker@indiana.edu 10.1093/bioinformatics/btp011}, author = {Barker, Michael S. and Dlugosch, Katrina M. and Reddy and Amyotte, Sarah N. and Rieseberg, Loren H.}, citeulike-article-id = {3866050}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp011}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/4/535?etoc}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19129211}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19129211}, day = {6}, doi = {10.1093/bioinformatics/btp011}, journal = {Bioinformatics}, keywords = {deep-sequencing, software}, month = {January}, pages = {btp011+}, posted-at = {2009-01-10 01:45:24}, priority = {2}, title = {SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses}, url = {http://dx.doi.org/10.1093/bioinformatics/btp011}, year = {2009} }

TY - JOUR ID - citeulike:3866050 L3 - citeulike-article-id:3866050 N2 - Summary: SCARF is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high quality reference sequences from related species. The program was created to knit together low coverage 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences. Availability: SCARF is freely available at http://msbarker.com/software.htm, and is released under the open source GPLv3 license (http://www.opensource.org/licenses/gpl-3.0.html). Contact: msbarker@indiana.edu 10.1093/bioinformatics/btp011 JF - Bioinformatics TI - SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses SP - btp011 KW - deep-sequencing KW - software AU - Barker, Michael AU - Dlugosch, Katrina AU - Reddy AU - Amyotte, Sarah AU - Rieseberg, Loren PY - 2009/01/06/ UR - http://dx.doi.org/10.1093/bioinformatics/btp011 ER -