fenghezi's motif [20 articles] Export

Recent papers added to fenghezi's library classified by the tag motif. You can also see everyone's motif.

	Improved visualization of protein consensus sequences by iceLogo [My Copy] Nature Methods In Nat Meth, Vol. 6, No. 11. (01 November 2009), pp. 786-787. by Niklaas Colaert, Kenny Helsens, Lennart Martens, Joel Vandekerckhove, Kris Gevaert posted to motif by fenghezi on 2009-12-08 16:42:24 as along with 2 people ngehlenborg gjuggler
	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature In Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to network motif integration by fenghezi on 2009-11-06 19:58:32 as along with 13 people idonaldson maximilianh cajunsushi emptyhb toszko roys inesdesantiago balabu iskathy djkt megraw TRHvidsten pedrobeltrao
	Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis [My Copy] Nature Neuroscience, Vol. 12, No. 9. (23 August 2009), pp. 1097-1105. by Tomoko Kuwabara, Jenny Hsieh, Alysson Muotri, et al.Gene Yeo, Masaki Warashina, Dieter C. Lie, Lynne Moore, Kinichi Nakashima, Makoto Asashima, Fred H. Gage posted to neurodev neuro motif development by fenghezi on 2009-09-04 22:26:39 as along with 1 person dchughes
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to network motif geneexp by fenghezi on 2009-09-01 14:41:21 as along with 12 people and 2 groups bsamal venancio aalibes idonaldson daveGerrard megraw scjparker maximilianh djkt isimpson Stew druvus BergmanLab Bioinformatics - CRUK
	DNA-binding specificity and in vivo targets of Caenorhabditis elegans nuclear factor I [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 29. (21 July 2009), pp. 12049-12054. by Christina M. Whittle, Elena Lazakovitch, Richard M. Gronostajski, Jason D. Lieb posted to geneexp motif by fenghezi on 2009-07-22 21:14:12 as
	Constructing transcriptional regulatory networks [My Copy] Genes & Development, Vol. 19, No. 13. (1 July 2005), pp. 1499-1511. by Alexandre Blais, Brian D. Dynlacht posted to motif network by fenghezi on 2009-07-18 04:41:14 as along with 9 people and 3 groups sergiun vertikalist brant balicea xico tabu braingrind lusk jtomasch BTS-PT-AS-CS EisenLab WetBiology
	Deciphering principles of transcription regulation in eukaryotic genomes [My Copy] Mol Syst Biol, Vol. 2, No. 1. (18 April 2006), pp. msb4100054-E1-msb4100054-E10. by Dat H. Nguyen, Patrik D'Haeseleer posted to motif network by fenghezi on 2009-07-18 04:38:33 as along with 6 people and 2 groups okarsligil pau koller reidy mikaelhuss isimpson Bioinformatics RNAtransport
	Eukaryotic transcription factor binding sites--modeling and integrative search methods [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1325-1331. by Sridhar Hannenhalli posted to integration motif by fenghezi on 2009-07-18 04:36:40 as along with 15 people bsamal isimpson wowalz cassj druvus nklee oannes hplatero maximilianh heliopais bootsy Ema sameetmehta guhjy chad_davis
	Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains [My Copy] Genome Research, Vol. 19, No. 1. (January 2009), pp. 24-32. by Suresh Cuddapah, Raja Jothi, Dustin E. Schones, Tae-Young Roh, Kairong Cui, Keji Zhao posted to histonemodification motif by fenghezi on 2009-07-10 22:58:51 as along with 13 people and 1 group aprickett suizifish gdb clearbluespring rschulz xingxu sebastien_vigneau cassj caseybrown polivares inesdesantiago oelemento maximilianh CTCF
	Transcriptional regulatory network analysis of developing human erythroid progenitors reveals patterns of coregulation and potential transcriptional regulators [My Copy] Physiol. Genomics, Vol. 28, No. 1. (13 December 2006), pp. 114-128. by M. A. Keller, S. Addya, R. Vadigepalli, et al.B. Banini, K. Delgrosso, H. Huang, S. Surrey posted to development geneexp motif by fenghezi on 2009-07-02 03:00:27 as along with 1 person Ao_Li2007
	E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites [My Copy] Genome Research, Vol. 18, No. 11. (3 November 2008), pp. 1763-1777. by Alina Rabinovich, Victor X. Jin, Roman Rabinovich, Xiaoqin Xu, Peggy J. Farnham posted to chipseq motif by fenghezi on 2009-06-30 18:21:46 as along with 1 person idonaldson
	Diversity and complexity in DNA recognition by transcription factors. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong F. Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to motif by fenghezi on 2009-06-26 20:25:36 as along with 24 people and 1 group bsamal sebastien_vigneau nklee sconlan isimpson jbhiatt daforerog absterga mingzhi galka8_diploma TRHvidsten ilyashl cambray rpatward tibbitts dpollard siebert JustinCrocker burak aalibes dipenps roys emptyhb tmmurali RockmanLab
	From DNA sequence to transcriptional behaviour: a quantitative approach. [My Copy] Nature reviews. Genetics, Vol. 10, No. 7. (01 July 2009), pp. 443-456. by Eran Segal, Jonathan Widom posted to integration motif by fenghezi on 2009-06-18 19:08:09 as along with 11 people and 1 group rdiaz ptrobajo guhjy dakelley megraw ilyashl francemirko talponer tonamswish clearbluespring TRHvidsten TranscriptionalRegulationWithThermodynamicModels
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to evo geneexp motif by fenghezi on 2009-06-16 16:53:03 as along with 22 people and 2 groups pradiptaray gdb dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nature genetics, Vol. 39, No. 6. (21 June 2007), pp. 730-732. by Duncan T. Odom, Robin D. Dowell, Elizabeth S. Jacobsen, et al.William Gordon, Timothy W. Danford, Kenzie D. MacIsaac, P. Alexander Rolfe, Caitlin M. Conboy, David K. Gifford, Ernest Fraenkel posted to evo geneexp motif by fenghezi on 2009-06-16 16:50:25 as along with 13 people and 4 groups vingron ajaymalik dpollard gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown yevishere gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	Detection of generic spaced motifs using submotif pattern mining. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 12. (15 June 2007), pp. 1476-1485. by E. Wijaya, K. Rajaraman, S. M. Yiu, W. K. Sung posted to evo motif by fenghezi on 2009-06-16 16:43:25 as along with 4 people wowalz grahamc cjeans xili03
	Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover [My Copy] Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1114-1121. by Emmanouil T. Dermitzakis, Andrew G. Clark posted to evo geneexp motif by fenghezi on 2009-06-16 16:36:01 as along with 6 people and 2 groups pradiptaray provero adepace cisevol emptyhb xili03 EisenLab cis-regulatory-evolution
	Frequent gain and loss of functional transcription factor binding sites. [My Copy] PLoS computational biology, Vol. 3, No. 5. (1 May 2007), e99. by Scott W. Doniger, Justin C. Fay posted to integration motif by fenghezi on 2009-06-16 16:33:14 as along with 12 people and 2 groups roys lusk JustinCrocker pradiptaray brant dpollard sebastien_vigneau zwang maximilianh cisevol xili03 emptyhb EisenLab cis-regulatory-evolution
	The Evolution of Combinatorial Gene Regulation in Fungi [My Copy] PLoS Biol, Vol. 6, No. 2. (26 February 2008), e38. by Brian B. Tuch, David J. Galgoczy, Aaron D. Hernday, Hao Li, Alexander D. Johnson posted to geneexp motif by fenghezi on 2009-06-16 03:52:57 as along with 5 people kiekyon emptyhb lusk tmmurali maximilianh
	MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4488-4497. by Jianfei Hu, Haiyan Hu, Xiaoman Li posted to geneexp motif by fenghezi on 2009-06-12 22:47:24 as along with 3 people bsamal wowalz maximilianh

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histonemodification	50
geneexp	48
technology	36
variation	36
smallrna	30
diseasegenes	28
development	26
motif	20
chipseq	19
mecg	18
evo	17
network	15
rnaseq	12
as	12
neurodev	10
genome_sequencing	9
integration	9
duplication	8
chip-seq	8
rna	8
autism	6
rest	6
deadgene	5
replication	4
monoallelicexp	4
plant	3
neuro	2
rnaedit	1
rna-seq	1
small	1

fenghezi's motif [20 articles] Export

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