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	Folding simulations of three proteins having all &agr;-helix, all &b.beta;-strand and &agr;/&b.beta;-structures [My Copy] Molecular Simulation (2009) by Yoshitake Sakae, Yuko Okamoto posted to folding by flbarroso on 2009-12-21 12:40:45 as
	Protein folding: where is the paradox? [My Copy] Journal of biomolecular structure & dynamics, Vol. 20, No. 3. (December 2002), pp. 331-332. by Ariel Fernández, Alejandro Belinky, María de las Mercedes d. e. . L. Boland posted to folding by flbarroso on 2009-12-20 17:10:58 as
	Polymer principles and protein folding. [My Copy] Protein science : a publication of the Protein Society, Vol. 8, No. 6. (1 June 1999), pp. 1166-1180. by K. A. Dill posted to folding by flbarroso on 2009-12-20 17:08:30 as along with 3 people mijam doktornoe sikorski
	Levinthal's paradox. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 1. (1 January 1992), pp. 20-22. by R. Zwanzig, A. Szabo, B. Bagchi posted to folding by flbarroso on 2009-12-20 17:08:22 as along with 1 person Diego_Prada
	NMR spectroscopy brings invisible protein states into focus [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (19 October 2009), pp. 808-814. by Andrew J. Baldwin, Lewis E. Kay posted to md folding by flbarroso on 2009-11-04 17:28:19 as along with 1 person paulschlesinger
	The folding, stability and conformational dynamics of [small beta]-barrel fluorescent proteins [My Copy] Chem. Soc. Rev., Vol. 38, No. 10. (2009), pp. 2951-2965. by Shang-Te D. Hsu, Georg Blaser, Sophie E. Jackson posted to folding by flbarroso on 2009-10-19 15:59:25 as
	Interaction of bovine -lactalbumin with fatty acids as determined by partition equilibrium and fluorescence spectroscopy [My Copy] International Dairy Journal, Vol. 16, No. 1. (January 2006), pp. 18-25. by C. Barbana, M. Perez, L. Sanchez, et al.M. Dalgalarrondo, J. Chobert, T. Haertle, M. Calvo posted to spectroscopy folding beta-lactoglobulin by flbarroso on 2009-08-14 18:22:55 as
	The molten globule state of alpha-lactalbumin [My Copy] FASEB J., Vol. 10, No. 1. (1 January 1996), pp. 102-109. by K. Kuwajima posted to folding alfa-lactalbumin by flbarroso on 2009-08-14 18:13:13 as
	Carboxyl pK(a) values, ion pairs, hydrogen bonding, and the pH-dependence of folding the hyperthermophile proteins Sac7d and Sso7d. [My Copy] Journal of molecular biology, Vol. 372, No. 4. (28 September 2007), pp. 992-1008. by A. T. Clark, K. Smith, R. Muhandiram, S. P. Edmondson, J. W. Shriver posted to folding nmr pka protein titration by flbarroso on 2009-07-29 15:25:06 as
	Charge-charge interactions influence the denatured state ensemble and contribute to protein stability. [My Copy] Protein science : a publication of the Protein Society, Vol. 9, No. 7. (July 2000), pp. 1395-1398. by C. N. Pace, R. W. Alston, K. L. Shaw posted to electrostatics folding ionic-strength ph-effect ribonuclease stability by flbarroso on 2009-07-21 18:59:00 as
	Measurement of electrostatic interactions in protein folding with the use of protein charge ladders. [My Copy] Journal of the American Chemical Society, Vol. 124, No. 12. (27 March 2002), pp. 2911-2916. by R. S. Negin, J. D. Carbeck posted to alfa-lactalbumin electrophoresis electrostatics folding by flbarroso on 2009-07-21 18:56:14 as
	Downhill protein folding: evolution meets physics [My Copy] Comptes Rendus Biologies, Vol. 328, No. 8. (August 2005), pp. 701-712. by M. Gruebele posted to folding reviews by flbarroso on 2009-07-21 15:53:33 as
	Protein folding via binding and [My Copy] Folding and Design, Vol. 3, No. 4. (August 1998), pp. R71-R80. by C. Tsai posted to binding folding reviews by flbarroso on 2009-07-21 15:53:12 as
	[26] Effect of point mutations of the folding of globular proteins [My Copy] In Recombinant DNA Part E, Vol. 154 (1987), pp. 498-511. by C. Matthews posted to folding by flbarroso on 2009-07-21 15:52:48 as
	[1] Electrostatic effects in protein folding, stability, and function [My Copy] In Molecular Design and Modeling: Concepts and Applications Part A: Proteins, Peptides, and Enzymes, Vol. 202 (1991), pp. 3-19. by N. Allewell, H. Oberoi posted to electrostatics folding stability by flbarroso on 2009-07-21 15:51:44 as along with 1 person scampos
	Classification of protein folds [My Copy] Current Opinion in Structural Biology, Vol. 4, No. 3. (June 1994), pp. 429-440. by C. Orengo posted to folding by flbarroso on 2009-07-21 15:23:06 as
	Barnase and barstar: two small proteins to fold and fit together. [My Copy] Trends in biochemical sciences, Vol. 14, No. 11. (November 1989), pp. 450-454. by R. W. Hartley posted to barnase barstar binding folding protein-protein by flbarroso on 2009-07-19 19:25:29 as
	Computational design of proteins stereochemically optimized in size, stability, and folding speed. [My Copy] Biopolymers, Vol. 83, No. 2. (5 October 2006), pp. 122-134. by S. Joshi, S. Rana, P. Wangikar, S. Durani posted to folding by flbarroso on 2009-07-19 18:57:57 as
	An amino acid code for protein folding. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 1. (2 January 2001), pp. 105-112. by J. Rumbley, L. Hoang, L. Mayne, S. W. Englander posted to folding by flbarroso on 2009-07-19 18:56:41 as
	Understanding the role of the topology in protein folding by computational inverse folding experiments. [My Copy] Computational biology and chemistry, Vol. 32, No. 4. (August 2008), pp. 233-239. by A. Mucherino, S. Costantini, D. di Serafino, M. D'Apuzzo, A. Facchiano, G. Colonna posted to folding by flbarroso on 2009-07-19 18:56:29 as along with 1 person zwang
	In silico study of amyloid beta-protein folding and oligomerization. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 50. (14 December 2004), pp. 17345-17350. by B. Urbanc, L. Cruz, S. Yun, et al.S. V. Buldyrev, G. Bitan, D. B. Teplow, H. E. Stanley posted to amyloid folding protein-protein by flbarroso on 2009-07-19 18:54:13 as along with 2 people chiufanlee cactus
	Role of electrostatic interactions in amyloid beta-protein (A beta) oligomer formation: a discrete molecular dynamics study. [My Copy] Biophysical journal, Vol. 92, No. 11. (1 June 2007), pp. 4064-4077. by S. Yun, B. Urbanc, L. Cruz, G. Bitan, D. B. Teplow, H. E. Stanley posted to amyloid electrostatics folding md protein-protein by flbarroso on 2009-07-19 18:53:42 as
	The folding of an enzyme. VI. The folding pathway of barnase: comparison with theoretical models. [My Copy] Journal of molecular biology, Vol. 224, No. 3. (5 April 1992), pp. 847-859. by L. Serrano, A. Matouschek, A. R. Fersht posted to barnase folding by flbarroso on 2009-07-19 18:52:54 as along with 1 person and 1 group cat_worth structural_bioinformatics
	Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid. [My Copy] The Journal of chemical physics, Vol. 120, No. 3. (15 January 2004), pp. 1602-1612. by A. Mukherjee, B. Bagchi posted to alzheimer bd fluorescence folding mc peptide by flbarroso on 2009-07-19 18:52:25 as along with 2 people and 2 groups ana choonpeng structural_bioinformatics Bioinformatics
	Protein folding and the organization of the protein topology universe. [My Copy] Trends in biochemical sciences, Vol. 30, No. 1. (January 2005), pp. 13-19. by K. Lindorff-Larsen, P. Røgen, E. Paci, M. Vendruscolo, C. M. Dobson posted to folding by flbarroso on 2009-07-19 18:50:51 as along with 3 people and 2 groups ana baaden allmensch structural_bioinformatics Bioinformatics
	Computer simulations of Alzheimer's amyloid beta-protein folding and assembly. [My Copy] Current Alzheimer research, Vol. 3, No. 5. (December 2006), pp. 493-504. by B. Urbanc, L. Cruz, D. B. Teplow, H. E. Stanley posted to alzheimer amyloid folding protein-protein by flbarroso on 2009-07-19 18:49:47 as
	Ab initio discrete molecular dynamics approach to protein folding and aggregation. [My Copy] Methods in enzymology, Vol. 412 (2006), pp. 314-338. by B. Urbanc, J. M. Borreguero, L. Cruz, H. E. Stanley posted to alzheimer amyloid folding md protein-protein by flbarroso on 2009-07-19 18:49:27 as
	Protein modeling with reduced representation: statistical potentials and protein folding mechanism. [My Copy] Acta biochimica Polonica, Vol. 52, No. 4. (2005), pp. 741-748. by Dariusz Ekonomiuk, Marcin Kielbasinski, Andrzej Kolinski posted to folding immunoglobulin mc protein statistical_potentials by flbarroso on 2009-07-19 18:47:55 as along with 1 person saunders
	Analysis of fragments induced by simulated lattice protein folding. [My Copy] Comptes rendus biologies, Vol. 327, No. 5. (May 2004), pp. 431-443. by J. Chomilier, M. Lamarine, J. P. Mornon, J. H. Torres, E. Eliopoulos, N. Papandreou posted to folding lattice_models by flbarroso on 2009-07-19 18:47:26 as
	Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution. [My Copy] Science (New York, N.Y.), Vol. 282, No. 5389. (23 October 1998), pp. 740-744. by Y. Duan, P. A. Kollman posted to folding md protein by flbarroso on 2009-07-19 18:46:42 as along with 7 people krapnik doktornoe Diego_Prada j3xucite allmensch RamuAnandakrishnan choonpeng
	Ab initio protein folding using LINUS. [My Copy] Methods in enzymology, Vol. 383 (2004), pp. 48-66. by R. Srinivasan, P. J. Fleming, G. D. Rose posted to folding prediction by flbarroso on 2009-07-19 18:45:04 as
	PROTEIN FOLDING:A Glimpse of the Holy Grail? [My Copy] Science, Vol. 282, No. 5389. (23 October 1998), pp. 642-643. by Herman J. C. Berendsen posted to folding md simulation by flbarroso on 2009-07-19 18:44:16 as
	Titration properties and thermodynamics of the transition state for folding: comparison of two-state and multi-state folding pathways. [My Copy] Journal of molecular biology, Vol. 264, No. 2. (29 November 1996), pp. 377-389. by Y. J. Tan, M. Oliveberg, A. R. Fersht posted to folding titration by flbarroso on 2009-07-19 18:30:13 as
	Valence and anion binding of bovine ribonuclease A between pH 6 and 8 [My Copy] Analytical Biochemistry, Vol. 336, No. 2. (15 January 2005), pp. 243-252. by Thomas P. Moody, Jonathan S. Kingsbury, Jennifer A. Durant, Timothy J. Wilson, Susan F. Chase, Thomas M. Laue posted to debye-huckel electrophoresis folding ion-binding ribonuclease stability by flbarroso on 2009-07-19 18:27:03 as
	A reduced protein model with accurate native-structure identification ability. [My Copy] Proteins, Vol. 53, No. 4. (1 December 2003), pp. 889-907. by M. R. Betancourt posted to folding modeling prediction by flbarroso on 2009-07-19 02:17:02 as
	Fold recognition methods. [My Copy] Methods of biochemical analysis, Vol. 44 (2003), pp. 525-546. by A. Godzik posted to folding by flbarroso on 2009-07-19 02:16:26 as along with 2 people and 2 groups marcius janasont BioinfoCIPF SGU-CIPF
	Development of novel statistical potentials for protein fold recognition. [My Copy] Current opinion in structural biology. , Vol. 14, No. 2. (April 2004), pp. 225-232. by N. V. Buchete, J. E. Straub, D. Thirumalai posted to folding statistical_potentials by flbarroso on 2009-07-19 02:10:02 as along with 3 people krapnik thamelry mirzazadeh
	Peptide and Protein Folding and Conformational Equilibria: Theoretical Treatment of Electrostatics and Hydrogen Bonding with Implicit Solvent Models [My Copy] Adv Protein Chem In Peptide Solvation and H‐Bonds, Vol. 72 (2005), pp. 173-198. by W. Im, J. Chen, C. Brooksiii posted to born continnum electrostatics folding by flbarroso on 2009-07-19 01:57:56 as along with 1 person allmensch
	Protein Folding and Binding: Effective Potentials, Replica Exchange Simulations, and Network Models [My Copy] Water and Biomolecules (2009), pp. 97-121. by A. K. Felts, M. Andrec, E. Gallicchio, R. M. Levy posted to binding effective-potentials folding simulation by flbarroso on 2009-07-19 00:59:58 as
	Minimalist models for protein folding and design [My Copy] Current Opinion in Structural Biology, Vol. 13, No. 2. (April 2003), pp. 160-167. by Teresa Head-Gordon, Scott Brown posted to folding modeling by flbarroso on 2009-07-18 15:19:36 as along with 1 person iantunbridge
	Recent developments in methodologies for calculating the entropy and free energy of biological systems by computer simulation. [My Copy] Current opinion in structural biology In Theory and simulation / Macromolecular assemblages, Vol. 17, No. 2. (April 2007), pp. 181-186. by Hagai Meirovitch posted to entropy folding free_energy protein simulation by flbarroso on 2009-07-17 00:08:38 as along with 5 people and 1 group xdeupi sunhwan aqeel dmobley cchang Chang group
	Computer simulation of protein folding. [My Copy] Nature, Vol. 253, No. 5494. (27 February 1975), pp. 694-698. by M. Levitt, A. Warshel posted to folding by flbarroso on 2009-07-17 00:08:03 as along with 3 people nigham baaden dgront
	Energetics of Protein Folding [My Copy] Journal of Molecular Biology, Vol. 371, No. 2. (10 August 2007), pp. 283-301. by Robert L. Baldwin posted to folding by flbarroso on 2009-07-15 04:22:15 as along with 6 people melo_mcr higueruelo mijam yarikson choonpeng cat_worth
	Folding simulations of alanine-based peptides with lysine residues [My Copy] Biophysical Journal, Vol. 68, No. 3. (March 1995), pp. 826-834. by S. Sung posted to folding by flbarroso on 2009-07-15 04:20:19 as
	Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models [My Copy] Accounts of Chemical Research, Vol. 33, No. 12. (1 December 2000), pp. 889-897. by Peter A. Kollman, Irina Massova, Carolina Reyes, et al.Bernd Kuhn, Shuanghong Huo, Lillian Chong, Matthew Lee, Taisung Lee, Yong Duan, Wei Wang, Oreola Donini, Piotr Cieplak, Jaysharee Srinivasan, David A. Case, Thomas E. Cheatham posted to continnum electrostatics folding free_energy md protein-protein by flbarroso on 2009-07-15 04:19:56 as along with 2 people edws Lombardo_7
	Structural origins of pH and ionic strength effects on protein stability. Acid denaturation of sperm whale apomyoglobin. [My Copy] Journal of molecular biology, Vol. 237, No. 5. (15 April 1994), pp. 602-614. by A. S. Yang, B. Honig posted to electrostatics folding myoglobin pka stability titration by flbarroso on 2009-07-15 04:13:31 as along with 2 people and 1 group cat_worth onufriev structural_bioinformatics
	Acquisition and use of calorimetric data for prediction of the thermodynamics of ligand-binding and folding reactions of proteins [My Copy] Current Opinion in Biotechnology, Vol. 5, No. 4. (August 1994), pp. 381-388. by P. Connelly posted to binding calorimetry folding by flbarroso on 2009-07-15 04:11:37 as
	Entropy in protein folding and in protein—protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 7, No. 2. (April 1997), pp. 215-221. by G. Brady posted to entropy folding protein-protein by flbarroso on 2009-07-15 04:10:41 as along with 1 person krapnik
	Modelling protein folding: the beauty and power of simplicity [My Copy] Folding and Design, Vol. 1, No. 3. (June 1996), pp. R50-R54. by E. Shakhnovich posted to folding by flbarroso on 2009-07-15 04:08:45 as
	Free Energy Determinants of Secondary Structure Formation: II. Antiparallel β-Sheets [My Copy] Journal of Molecular Biology, Vol. 252, No. 3. (22 September 1995), pp. 366-376. by A. Yang posted to electrostatics folding free_energy pb prediction by flbarroso on 2009-07-15 03:48:00 as along with 1 person chiufanlee

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electrostatics	445
protein-protein	235
protein	179
folding	176
bioinformatics	117
md	116
binding	114
beta-lactoglobulin	87
protein-polyelectrolyte	82
pb	70
drug-design	68
continnum	67
force-fields	65
applications	62
solvation	56
lysozyme	56
docking	55
free_energy	54
calcium-binding	52
pka	50
water	50
prediction	48
modeling	45
hydrophobicity	43
database	39
whey	39
ph	36
titration	35
polyelectrolytes	32
albumin	31
mc	31
system_biology	31
calmodulin	31
protein-surface	30
alfa-lactalbumin	30
liquids	30
chitosan	29
aggregation	28
virial	28
dielectric	26
drug-delivery	26
reviews	25
membrane	25
coacervate	25
crystallization	25
simulation	24
complexation	24
charge-regulation	23
electrophoresis	21
born	21
polarizable	21
amyloid	20
colloids	20
enzyme	19
ion-binding	17
polymer	17
rmc	17
alzheimer	17
milk	17
light-scattering	16
peptide	16
barnase	16
pectin	15
dna	15
nanoparticles	14
microcapsules	14
cancer	14
van-der-waals	14
lactoferrin	13
ionic-strength	13
thrombin	12
hemoglobin	12
barstar	12
qmmm	11
antibody-antigen	10
acacia	10
solvent_accessible_surface	10
lattice_models	10
stability	10
channel	9
micelles	9
chromatography	9
sampling	9
hirudin	9
caseins	9
structural-changes	8
evolutive	8
calorimetry	8
mc-sampling	8
entropy	8
calbindin	8
nmr	8
protein-drug	8
strategic_planning	7
hpmodel	7
flexibility	7
protein-peptide	7
solubility	7
hiv	6
soft_matter	6
ph-effect	6
double_layer	6
pk	6
effective-potentials	6
x-ray	6
discontinuities	6
trypsin	6
actin	6
pi	6
activity_coefficients	5
protein-dna	5
immunoglobulin	5
osmotic	5
like-charged	5
hofmeister	5
homology	5
prion	5
molecular_dynamics_package	5
thermodynamics	5
separation	5
ribonuclease	5
ion-pairs	5
intermolecular-forces	5
patch	5
emulsions	5
fluid	5
myosin	5
ovalbumin	4
nacl	4
chymotrypsin	4
on-the-wrong-side	4
validation_protein	4
hamaker	4
spectroscopy	4
ion-ion_correlation	4
ca_chain_models	4
design	4
cytochrome	4
concentration-effect	4
chymotrypsinogen	3
statistical_potentials	3
myoglobin	3
nanostructure	3
ca	3
thrombomodulin	3
debye-huckel	3
genomics	3
protein_structure	3
afm	3
multiscale_modeling	3
protein_families	3
spectrometry	3
diseases	3
lie	3
widom	3
biological_physics	3
similarity	3
fluorescence	3
sedimentation	2
thioredoxin	2
non-electrostatic	2
nanotechnology	2
bacteria	2
allostery	2
igg	2
zeta-potential	2
cholesterol	2
protein-family	2
coarse_grain	2
amorphous	2
brushes	2
heparin	2
precipitation	2
fatty-acids	2
ferritin	2
influenza	2
gels	2
antioxidant	2
lectin	2
xanthan	2
chromatin	2
dvlo	2
sod	2
anesthetics	2
bd	2
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fibril	2
hyaluronic	2
oppositely-charged	2
mineral	2
chemistry2	2
food	2
clays	2
coarse-graining	2
nanotubes	2
sir	2
alignment	2
trichosurin	1
transferases	1
fructose	1
acetylcholinesterase	1
tanford-kirkwood	1
turbidity	1
rnasea	1
drude	1
prion_proteins	1
toxin	1
multi-objective	1
crambin	1
lidocaine	1
gel-filtration	1
cyclodextrin	1
protease	1
pvs	1
ovomucoid	1
epr	1
hydration	1
bapta	1
pectase	1
fasciculin	1
antimicrobial	1
diffraction	1
spectophotometry	1
ab_initio	1
cathepsin	1
science	1
zeolites	1
melatonin	1
cements	1
kallikrein	1
fulleran	1
aot	1
gramicidin	1
synechococcus	1
ionic_liquids	1
qsar	1
lipid_bilayers	1
microtubules	1
structural_genomics	1
calspermin	1
geometry	1
percolation	1
microscopic	1
p53	1
pollen	1
protein_g	1
dissociation	1
paa	1
potential_energy	1
alginate	1
proteome	1
raman	1
diabetes	1
interaction_forces	1
copper_proteins	1
generalized	1
lattice_boltzmann	1
ubiquitin	1
histone	1
ribosome	1
tyrosinase	1
dispersion	1
phase_diagram	1
contact_map	1
encapsulation	1
quantum_chemistry	1
pdmdaac	1
three-body	1
rhodamine	1
virus_structure_and_assembly	1
nmr_experiments	1
lennard_jones	1
vaccines	1
trifluoperazine	1
random_numbers	1
tryptase	1
lactoperoxidase	1
mean_field	1
peroxidase	1
antibiotics	1
surface_area	1
genomes	1
history	1
fibroin	1
transferrin	1
scattering	1
dendrimer	1
anemia	1
proteomics	1
chelator	1
peg	1
collagen	1
surfaces	1
coagulation	1
electron-transfer	1
peptides	1
tubulin	1
quantum_chemical	1
gama-globulin	1
tetracene	1
vesicle	1
enkephalin	1
silica_material	1
argon_gas	1
attractive_forces	1
crowding	1
psoriasin	1
histidines	1
calcyclin	1
polysaccharide	1
parallelization	1
pss	1
counterion-condensation	1
ras-raf	1
tannins	1
parkinson	1

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