fpattyn's library 202 articles Export

	Impact of Polyglutamation on Sensitivity to Raltitrexed and Methotrexate in Relation to Drug-induced Inhibition of de Novo Thymidylate and Purine Biosynthesis in CCRF-CEM Cell Lines [My Copy] Clinical Cancer Research, Vol. 5, No. 9. (September 1999), pp. 2548-2558. by Matthew J. Barnes, Edward J. Estlin, Gordon A. Taylor, et al.G. Wynne Aherne, A. Hardcastle, J. J. McGuire, Joanne A. Calvete, John Lunec, Andrew D. J. Pearson, David R. Newell posted to raltitrexed polyglutamination methotrexate folate by fpattyn on 2009-11-17 04:34:49 as along with 1 group Neuroblastoma
	Evidence for large diversity in the human transcriptome created by Alu RNA editing [My Copy] Nucl. Acids Res., Vol. 37, No. 20. (1 November 2009), pp. 6905-6915. by Michal Barak, Erez Y. Levanon, Eli Eisenberg, et al.Nurit Paz, Gideon Rechavi, George M. Church, Ramit Mehr posted to rna reference qpcr editing alu by fpattyn on 2009-11-16 09:15:40 as
	Myc-regulated microRNAs attenuate embryonic stem cell differentiation [My Copy] The EMBO Journal, Vol. 28, No. 20. (10 September 2009), pp. 3157-3170. by Chin-Hsing Lin, Aimee L. Jackson, Jie Guo, Peter S. Linsley, Robert N. Eisenman posted to target_genes qpcr myc mirna chip by fpattyn on 2009-10-28 18:02:16 as along with 2 people inesdesantiago valeriehilgers
	Global mapping of c-Myc binding sites and target gene networks in human B cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 47. (21 November 2006), pp. 17834-17839. by Karen I. Zeller, XiaoDong Zhao, Charlie W. Lee, et al.Kuo Ping P. Chiu, Fei Yao, Jason T. Yustein, Hong Sain S. Ooi, Yuriy L. Orlov, Atif Shahab, How Choong C. Yong, Yutao Fu, Zhiping Weng, Vladimir A. Kuznetsov, Wing-Kin K. Sung, Yijun Ruan, Chi V. Dang, Chia-Lin L. Wei posted to target_genes network myc chip_pet chip by fpattyn on 2009-10-28 17:10:35 as along with 3 people tonamswish jtomasch bryankr
	Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 6064-6075. by Benjamin Audit, Lamia Zaghloul, Cedric Vaillant, et al.Guillaume Chevereau, Yves d'Aubenton-Carafa, Claude Thermes, Alain Arneodo posted to transcription sites replication_origins replication_initiation fragile chromatin by fpattyn on 2009-10-23 10:26:11 as along with 2 people and 2 groups inesdesantiago sebastien_vigneau Epigenetics Journal picks
	Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 5969-5980. by Kang Tu, Hui Yu, You-Jia Hua, et al.Yuan-Yuan Li, Lei Liu, Lu Xie, Yi-Xue Li posted to target_genes secondary primary network mirna by fpattyn on 2009-10-23 10:03:46 as along with 7 people and 1 group aaron_webber heliopais tmmurali eshirdel pshuster guhjy valeriehilgers microRNA
	MSX1 induces the Wnt pathway antagonist genes DKK1, DKK2, DKK3, and SFRP1 in neuroblastoma cells, but does not block Wnt3 and Wnt5A signalling to DVL3. [My Copy] Cancer letters (6 October 2009) by Ingrid Revet, Gerda Huizenga, Jan Koster, et al.Richard Volckmann, Peter van Sluis, Rogier Versteeg, Dirk Geerts posted to wnt neuroblastoma dkk3 by fpattyn on 2009-10-13 15:23:49 as along with 1 group Neuroblastoma
	HIF-2alpha maintains an undifferentiated state in neural crest-like human neuroblastoma tumor-initiating cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 39. (29 September 2009), pp. 16805-16810. by Alexander Pietras, Loen M. Hansford, A. Sofie Johnsson, et al.Esther Bridges, Jonas Sjölund, David Gisselsson, Matilda Rehn, Siv Beckman, Rosa Noguera, Samuel Navarro, Jörg Cammenga, Erik Fredlund, David R. Kaplan, Sven Påhlman posted to stem_cell neuroblastoma hypoxia hif-2alpha by fpattyn on 2009-10-07 11:41:15 as along with 1 group Neuroblastoma
	N-myc downstream regulated gene-1/Cap43 may play an important role in malignant progression of prostate cancer, in its close association with E-cadherin. [My Copy] Human pathology (30 September 2009) by Yoohyun Song, Yoshinao Oda, Mikifumi Hori, et al.Kentaro Kuroiwa, Mayumi Ono, Fumihito Hosoi, Yuji Basaki, Shoji Tokunaga, Michihiko Kuwano, Seiji Naito, Masazumi Tsuneyoshi posted to prostate_cancer ndrg1 mycnot mycn by fpattyn on 2009-10-06 11:48:50 as along with 1 group Neuroblastoma
	Chromatin poises miRNA- and protein-coding genes for expression. [My Copy] Genome research, Vol. 19, No. 10. (27 October 2009), pp. 1742-1751. by Artem Barski, Raja Jothi, Suresh Cuddapah, et al.Kairong Cui, Tae-Young Y. Roh, Dustin E. Schones, Keji Zhao posted to protein poises mrna mirna expression chromatin chip_seq chip by fpattyn on 2009-10-02 00:25:19 as along with 9 people and 2 groups tonamswish heliopais samgj polivares megraw inesdesantiago djkt fenghezi idonaldson microRNA Neuroblastoma
	Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns [My Copy] Genome Research, Vol. 19, No. 10. (October 2009), pp. 1872-1883. by Christoph Kaleta, LuÃs F. de Figueiredo, Stefan Schuster posted to network metabolomics genome flux analysis by fpattyn on 2009-10-01 23:54:57 as along with 3 people and 1 group schwartzjmc daveGerrard TRHvidsten Neuroblastoma
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to nextgen lookseq browser by fpattyn on 2009-09-30 14:11:51 as along with 27 people and 2 groups hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire xianjun katholt stubrown orzenil operon guhjy kongl stajich n00c torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	Lysosomal-associated protein multispanning transmembrane 5 gene (LAPTM5) is associated with spontaneous regression of neuroblastomas. [My Copy] PloS one, Vol. 4, No. 9. (2009) by Jun Inoue, Akiko Misawa, Yukichi Tanaka, et al.Shizuko Ichinose, Yuriko Sugino, Hajime Hosoi, Tohru Sugimoto, Issei Imoto, Johji Inazawa posted to spontaneous regression neuroblastoma laptm5 autophagy 4s by fpattyn on 2009-09-30 11:45:21 as
	Patched1 deletion increases N-Myc protein stability as a mechanism of medulloblastoma initiation and progression [My Copy] Oncogene, Vol. 28, No. 13. (23 February 2009), pp. 1605-1615. by W. D. Thomas, J. Chen, Y. R. Gao, et al.B. Cheung, J. Koach, E. Sekyere, M. D. Norris, M. Haber, T. Ellis, B. Wainwright, G. M. Marshall posted to stability protein mycn medulloblastoma by fpattyn on 2009-09-29 10:40:51 as
	Comparative study of gene set enrichment methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 275. by Luca Abatangelo, Rosalia Maglietta, Angela Distaso, et al.Annarita D'Addabbo, Teresa Creanza, Sayan Mukherjee, Nicola Ancona posted to sets gsea gene expression enrichment differential comparison analysis by fpattyn on 2009-09-08 17:45:40 as along with 10 people shikin dswan zufar heliopais pengchy rdiaz daforerog arjun_citeulike barriot druvus
	A simple PCR method for rapid genotype analysis of the TH-MYCN transgenic mouse. [My Copy] PloS one, Vol. 4, No. 9. (2009) by Seiki Haraguchi, Akira Nakagawara posted to tyrosine_hydroxylase neuroblastoma mycn mouse genotype_analysis by fpattyn on 2009-09-07 09:10:06 as along with 1 group Neuroblastoma
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted to software chip_seq by fpattyn on 2009-09-03 17:22:18 as along with 18 people and 1 group hzoltan gdb huali ewilban1 fenghezi smiddha jfr bertelsen JeremyZucker cassj inesdesantiago dakelley ghattem abizar polivares idonaldson WanderingAengus guhjy SIMR bioinformatics
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to software chipsequencing chip_seq chip_chip chip by fpattyn on 2009-09-03 17:21:35 as along with 24 people and 3 groups hzoltan stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. [My Copy] Methods (San Diego, Calif.), Vol. 48, No. 3. (7 July 2009), pp. 240-248. by Dominic Schmidt, Michael D. Wilson, Christiana Spyrou, Gordon D. Brown, James Hadfield, Duncan T. Odom posted to protocol method chipsequencing by fpattyn on 2009-09-03 17:20:53 as along with 8 people samanthacooper roys guhjy gdb ewilban1 idonaldson rschulz clearbluespring
	Insights from genomic profiling of transcription factors [My Copy] Nature Reviews Genetics, Vol. 10, No. 9. (11 August 2009), pp. 605-616. by Peggy J. Farnham posted to transcription review farnham factor chip by fpattyn on 2009-09-03 17:20:25 as along with 17 people and 2 groups heliopais inesdesantiago fenghezi nklee samanthacooper druvus frohike stubrown qayub megraw TRHvidsten mkiyer ericrpaquet ilyashl jbhiatt idonaldson danmaclean Journal picks Chinnaiyan Lab
	Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation. [My Copy] Methods (San Diego, Calif.), Vol. 48, No. 4. (9 August 2009), pp. 398-408. by Daniel A. Gilchrist, David C. Fargo, Karen Adelman posted to transcription factor chipsequencing chip by fpattyn on 2009-09-03 17:19:49 as along with 5 people ewilban1 guhjy inesdesantiago sebastien_vigneau idonaldson
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to transcription_factor_binding_sites transcription factor chipsequencing chip binding by fpattyn on 2009-09-03 13:51:37 as along with 12 people and 1 group jfr tonamswish rdiaz jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg Journal picks
	Evaluation of the impact of single nucleotide polymorphisms and primer mismatches on quantitative PCR. [My Copy] BMC Biotechnology, Vol. 9, No. 1. (28 August 2009), 75. by Brian Boyle, Nancy Dallaire, John Mackay posted to snp qpcr primer mismatch efficiency by fpattyn on 2009-09-01 11:36:04 as along with 1 group Neuroblastoma
	QUBIC: a qualitative biclustering algorithm for analyses of gene expression data. [My Copy] Nucleic acids research, Vol. 37, No. 15. (1 August 2009), e101. by Guojun Li, Qin Ma, Haibao Tang, Andrew H. Paterson, Ying Xu posted to software gene expression biclustering analysis algorithm by fpattyn on 2009-08-26 17:25:43 as along with 7 people and 1 group marti davidalee meanerelk rdiaz gbloeb tmmurali yaredo Orengo Group Journal Picks
	DiProGB: The Dinucleotide Properties Genome Browser. [My Copy] Bioinformatics (Oxford, England) (15 July 2009), btp436. by Maik Friedel, Swetlana Nikolajewa, Jürgen Sühnel, Thomas Wilhelm posted to sites properties genome fragile chemical browser by fpattyn on 2009-08-19 22:17:48 as along with 2 people guhjy rschulz
	A stochastic model for identifying differential gene pair co-expression patterns in prostate cancer progression [My Copy] BMC Genomics, Vol. 10, No. 1. (29 July 2009), 340. by Wen Mo, Xu Fu, Xiao Han, et al.Guang Yang, Ji Zhang, Feng Guo, Yan Huang, Yu Mao, Yao Li, Yi Xie posted to profiling pattern pair model gene expression differential co-expression cancer algorithm by fpattyn on 2009-08-19 21:47:45 as along with 2 people nuin rdiaz
	Improved base calling for the Illumina Genome Analyzer using machine learning strategies [My Copy] Genome Biology, Vol. 10, No. 8. (14 August 2009), R83. by Martin Kircher, Udo Stenzel, Janet Kelso posted to nextgen mpi illumina ibis duitsland calling base by fpattyn on 2009-08-19 21:22:03 as along with 7 people and 1 group seb1 djkt reyez danmaclean ppgardne n00c druvus Journal picks
	A fast and efficient gene-network reconstruction method from multiple over-expression experiments [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (17 August 2009), 253. by Dejan Stokic, Rudolf Hanel, Stefan Thurner posted to systems network gene expression biology by fpattyn on 2009-08-19 20:54:18 as along with 5 people sotacam rdiaz barriot TRHvidsten danmaclean
	Regulation of de novo purine biosynthesis by methenyltetrahydrofolate synthetase in neuroblastoma. [My Copy] The Journal of biological chemistry, Vol. 281, No. 7. (17 February 2006), pp. 4215-4221. by Martha S. Field, Doletha M. Szebenyi, Patrick J. Stover posted to neuroblastoma mthf folate by fpattyn on 2009-08-18 15:19:54 as along with 1 group Neuroblastoma
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to sequencing nextgen illumina high-throughput calling base by fpattyn on 2009-08-13 08:55:02 as along with 13 people and 2 groups heliopais dakelley lp2 megraw rdiaz torfinnnome djkt n00c farhat druvus polivares stajich jbhiatt BergmanLab Mycology
	Regulation of MYCN expression in human neuroblastoma cells. [My Copy] BMC cancer, Vol. 9 (2009) by Joannes F. Jacobs, Hans van Bokhoven, Frank N. van Leeuwen, et al.Christina A. Hulsbergen-van de Kaa, I. Jolanda de Vries, Gosse J. Adema, Peter M. Hoogerbrugge, Arjan P. de Brouwer posted to expression mycn neuroblastoma splice transcript variant by fpattyn on 2009-08-10 09:37:01 as along with 1 group Neuroblastoma
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to biology standard systems by fpattyn on 2009-08-08 08:00:03 as along with 37 people and 3 groups greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Correlation signature of the macroscopic states of the gene regulatory network in cancer. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 11. (17 March 2009), pp. 4079-4084. by Nikolai Slavov, Kenneth A. Dawson posted to correlation gene microarray network pathway regulation signature vector by fpattyn on 2009-08-05 10:21:18 as along with 5 people and 1 group zufar jfr vertikalist rdiaz provero BTS-PT-AS-CS
	NCBI Peptidome: a new public repository for mass spectrometry peptide identifications [My Copy] Nat Biotech, Vol. 27, No. 7. (July 2009), pp. 600-601. by Douglas J. Slotta, Tanya Barrett, Ron Edgar posted to database ncbi peptide peptidome proteomics by fpattyn on 2009-07-14 13:24:26 as along with 4 people and 1 group reyez brianb neils ppgardne Journal picks
	Next-generation tag sequencing for cancer gene expression profiling [My Copy] Genome Research, Vol. 19, No. 10. (10 October 2009), pp. 1825-1835. by A. Sorana Morrissy, Ryan D. Morin, Allen Delaney, et al.Thomas Zeng, Helen McDonald, Steven Jones, Yongjun Zhao, Martin Hirst, Marco A. Marra posted to cancer expression gene nextgen sequencing tag-seq by fpattyn on 2009-07-14 10:05:55 as along with 4 people and 1 group hzoltan Stew torfinnnome guhjy Bioinformatics - CRUK
	c-Myc activates multiple metabolic networks to generate substrates for cell-cycle entry [My Copy] Oncogene, Vol. 28, No. 27. (18 May 2009), pp. 2485-2491. by F. Morrish, N. Isern, M. Sadilek, M. Jeffrey, D. M. Hockenbery posted to folate metabolomics myc by fpattyn on 2009-07-09 13:41:54 as along with 2 people and 1 group tibbitts renatomilani Neuroblastoma
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to browser genome by fpattyn on 2009-07-06 22:58:01 as along with 28 people and 2 groups hzoltan darian mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet cisevol danmaclean timhubbard operon neils BergmanLab Journal picks
	Fluidigm Dynamic Arrays provide a platform for single-cell gene expression analysis [My Copy] Nat Meth, Vol. 6, No. 7. (July 2009) by Martin Pieprzyk, Howard High posted to analysis cell expression fluidigm gene single by fpattyn on 2009-07-02 14:19:55 as
	Limitations and possibilities of small RNA digital gene expression profiling [My Copy] Nat Meth, Vol. 6, No. 7. (01 July 2009), pp. 474-476. by Sam E. V. Linsen, Elzo de Wit, Georges Janssens, et al.Sheila Heater, Laura Chapman, Rachael K. Parkin, Brian Fritz, Stacia K. Wyman, Ewart de Bruijn, Emile E. Voest, Scott Kuersten, Muneesh Tewari, Edwin Cuppen posted to analysis digital expression gene nextgen profiling rna small by fpattyn on 2009-07-02 14:02:23 as along with 7 people and 2 groups vingron pengchy guhjy lp2 timhubbard stajich gdb RGASP Mycology
	MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions [My Copy] Nat Meth, Vol. 6, No. 7. (31 May 2009), pp. 473-474. by Seunghak Lee, Fereydoun Hormozdiari, Can Alkan, Michael Brudno posted to clone-end indel nextgen sequencing by fpattyn on 2009-07-02 14:00:17 as along with 3 people and 1 group ongenetics druvus dakelley Neuroblastoma
	DNA analysis servers: plot.it, bend.it, model.it and IS. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3686-3687. by K. Vlahovicek, L. Kaján, S. Pongor posted to bendability bendit dna fragile sites by fpattyn on 2009-07-02 12:19:56 as along with 1 person inesdesantiago
	New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites. [My Copy] Genome research, Vol. 19, No. 7. (31 July 2009), pp. 1175-1183. by Inhan Lee, Subramanian S. Ajay, Jong In I. Yook, et al.Hyun Sil S. Kim, Su Hyung H. Hong, Nam Hee H. Kim, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Brian D. Athey posted to 3primerutr 5primeutr class interaction mirna new recognition site by fpattyn on 2009-07-02 11:48:31 as along with 15 people and 5 groups hzoltan ebcgantman jfr ashkelon13 heliopais megraw fenghezi tmmurali ppgardne tonamswish stajich Einat daforerog valeriehilgers ealloza Neuroblastoma Journal picks microRNA Mycology cube_and_beyond
	Telomerase modulates Wnt signalling by association with target gene chromatin. [My Copy] Nature, Vol. 460, No. 7251. (2 July 2009), pp. 66-72. by J. I. Park, A. S. Venteicher, J. Y. Hong, et al.J. Choi, S. Jun, M. Shkreli, W. Chang, Z. Meng, P. Cheung, H. Ji, M. McLaughlin, T. D. Veenstra, R. Nusse, P. D. McCrea, S. E. Artandi posted to betacatenin chip chromatin smarca4 tert transcription wnt by fpattyn on 2009-07-02 10:27:05 as along with 1 person and 1 group wmatsui Neuroblastoma
	Competitive Interactions Between Cells: Death, Growth, and Geography [My Copy] Science, Vol. 324, No. 5935. (26 June 2009), pp. 1679-1682. by Laura A. Johnston posted to cell environment interaction myc stemcell by fpattyn on 2009-06-30 10:29:25 as along with 4 people and 1 group leliavski Zephyrus roys jago Neuroblastoma
	Tiny RNAs associated with transcription start sites in animals. [My Copy] Nature genetics, Vol. 41, No. 5. (19 May 2009), pp. 572-578. by Ryan J. Taft, Evgeny A. Glazov, Nicole Cloonan, et al.Cas Simons, Stuart Stephen, Geoffrey J. Faulkner, Timo Lassmann, Alistair R. Forrest, Sean M. Grimmond, Kate Schroder, Katharine Irvine, Takahiro Arakawa, Mari Nakamura, Atsutaka Kubosaki, Kengo Hayashida, Chika Kawazu, Mitsuyoshi Murata, Hiromi Nishiyori, Shiro Fukuda, Jun Kawai, Carsten O. Daub, David A. Hume, Harukazu Suzuki, Valerio Orlando, Piero Carninci, Yoshihide Hayashizaki, John S. Mattick posted to ncrna tirna tss by fpattyn on 2009-06-30 10:06:20 as along with 15 people hzoltan inesdesantiago guhjy jfr gdb xingxu galka8_diploma tonamswish antonkratz mtagaya fenghezi ilyashl jbhiatt TRHvidsten natstreet
	CellMiner: a relational database and query tool for the NCI-60 cancer cell lines [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 277. by Uma Shankavaram, Sudhir Varma, David Kane, et al.Margot Sunshine, Krishna Chary, William Reinhold, Yves Pommier, John Weinstein posted to acgh affymetrix analysis cancer cell database integrated lines microarray mirna mrna by fpattyn on 2009-06-24 13:03:10 as
	Definition, conservation and epigenetics of housekeeping and tissue-enriched genes [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 269. by Xinwei She, Carol Rohl, John Castle, Amit Kulkarni, Jason Johnson, Ronghua Chen posted to gene housekeeping reference by fpattyn on 2009-06-24 10:31:35 as along with 4 people rdiaz guhjy barriot shikin
	Variance stabilization applied to microarray data calibration and to the quantification of differential expression [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S96-104. by Wolfgang Huber, Anja von Heydebreck, Holger Sultmann, Annemarie Poustka, Martin Vingron posted to microarray normalisation variance by fpattyn on 2009-06-22 15:21:05 as along with 2 people humburg baldigroup
	High-resolution profiling of histone methylations in the human genome. [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by Artem Barski, Suresh Cuddapah, Kairong Cui, et al.Tae-Young Y. Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao posted to chip chromatin epigenetic histone markers methylation by fpattyn on 2009-06-19 11:16:00 as along with 22 people and 2 groups rsaito darian tonamswish stubrown hagechouchin443 absterga ewilban1 suizifish jochenG caseybrown raylim jernst giovenko guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha inesdesantiago dquest JLab Plantandetc
	Promoter-specific transcriptional interference and c-myc gene silencing by siRNAs in human cells [My Copy] The EMBO Journal (21 May 2009) by Sara Napoli, Chiara Pastori, Marco Magistri, Giuseppina M. Carbone, Carlo V. Catapano posted to myc promoter rnai silencing sirna transcriptional by fpattyn on 2009-06-17 12:57:54 as

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neuroblastoma	30
gene	28
myc	22
transcription	22
mirna	20
mycn	20
expression	17
analysis	16
chip	16
factor	16
cancer	15
dna	13
promoter	12
nextgen	11
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folate	7
network	7
protein	7
target	7
algorithm	6
genome	6
human	6
p53	6
qpcr	6
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apoptosis	5
chipsequencing	5
element	5
fragile	5
primer	5
rna	5
site	5
bioinformatics	4
biology	4
chromatin	4
database	4
dkk3	4
histone	4
metabolomics	4
methylation	4
microarray	4
mrna	4
pcr	4
profiling	4
r	4
systems	4
acid	3
browser	3
chip_seq	3
conservation	3
copy	3
design	3
enrichment	3
epigenetics	3
flux	3
footprinting	3
genes	3
markers	3
max	3
metabolic	3
motif	3
pathway	3
prediction	3
proliferation	3
proteomics	3
quantitative	3
review	3
target_genes	3
transcriptional	3
variant	3
wnt	3
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axin1	2
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neural	2
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number	2
oncogenes	2
ontology	2
p73	2
pattyn	2
polymerase	2
primerschemistry	2
prostate	2
ras	2
reactionmethods	2
real-time	2
reference	2
repression	2
reuss	2
rnai	2
rtprimerdb	2
sequence	2
single	2
small	2
snp	2
stability	2
statistics	2
tert	2
text	2
therapy	2
warburg	2
13c	1
3c-qpcr	1
3primerutr	1
4s	1
5primeutr	1
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aging	1
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alu	1
angiogenesis	1
animals	1
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assays	1
aurora	1
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b	1
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bendit	1
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bioconductor	1
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cdc25b	1
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duitsland	1
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e2f1	1
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encode	1
enotebook	1
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govt	1
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gui	1
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indel	1
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inhibitors	1
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interface	1
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laptm5	1
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lines	1
lookseq	1
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mad	1
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mpi	1
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mycnot	1
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names	1
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ncbi	1
ndrg1	1
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neurod1	1
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new	1
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nucleotide	1
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oligonucleotide	1
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pattern	1
peptide	1
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pirna	1
poises	1
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proteindna	1
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pseudocount	1
ptger2	1
raltitrexed	1
rapamycin	1
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rdna	1
recognition	1
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replication_origins	1
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retinoic	1
ribosome	1
sage	1
sample	1
scratch	1
scripting	1
secondary	1
segmental	1
set	1
sets	1
sh-sy5y	1
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smarca4	1
smarcc1	1
smell	1
splice	1
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standard	1
stemcell	1
stem_cell	1
sulfiteschemistry	1
support	1
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tags	1
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testing	1
theoretic	1
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tp73	1
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tss	1
t-ucr	1
tumorigenesis	1
twist1	1
tyrosine_hydroxylase	1
ucr	1
user-computer	1
valencia	1
variance	1
vector	1
viewer	1
wiki	1
wikiproteins	1
wound	1
zbtb4	1

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