franklu310's library 45 articles Export

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	H++: a server for estimating pKas and adding missing hydrogens to macromolecules [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_2. (1 July 2005), pp. W368-371. by John C. Gordon, Jonathan B. Myers, Timothy Folta, Valia Shoja, Lenwood S. Heath, Alexey Onufriev posted to pka by franklu310 on 2009-08-15 00:40:02 as along with 3 people rodrigofaccioli flbarroso choonpeng
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted to career by franklu310 on 2009-08-10 04:59:52 as along with 60 people and 7 groups annakcroft brianb nuin skembel pekrau Sergey_gerbek mordiano remoteFuture Yanno aaltenburger marekrud guhjy dolchan frohike operon CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais lmichan silberbauer leemond31 jlangdon robfsouza Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom wei_tang fenghezi cisevol barry sdaehne druvus Pedro Martinez EvoDevo lab Barcelona Orengo Group Journal Picks Bioinformatics - CRUK ccsbs BergmanLab structural_bioinformatics McCammon
	Lectures on String Theory [My Copy] (3 Aug 2009) by David Tong posted to string-theory by franklu310 on 2009-08-10 04:57:35 as along with 6 people vasin steinkirch navins josefonseca NitinCR melvineloy
	Mechanism of anionic conduction across ClC. [My Copy] Biophysical journal, Vol. 86, No. 2. (February 2004), pp. 836-845. by Jordi Cohen, Klaus Schulten posted to channel clc by franklu310 on 2009-08-10 04:33:04 as
	Chloride ion conduction without water coordination in the pore of ClC protein [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Youn J. Ko, Won H. Jo posted to channel clc by franklu310 on 2009-08-10 02:17:03 as
	STRUCTURE AND FUNCTION OF CLC CHANNELS [My Copy] Annual Review of Physiology, Vol. 67, No. 1. (2005), pp. 809-839. by Tsung Y. Chen posted to channel clc by franklu310 on 2009-08-10 02:15:27 as
	Ion permeation through a Cl−-selective channel designed from a CLC Cl−/H+ exchanger [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11194-11199. by Hariharan Jayaram, Alessio Accardi, Fang Wu, Carole Williams, Christopher Miller posted to channel clc by franklu310 on 2009-08-09 08:46:55 as along with 1 person paulschlesinger
	Determinants of Anion-Proton Coupling in Mammalian Endosomal CLC Proteins [My Copy] J. Biol. Chem., Vol. 283, No. 7. (15 February 2008), pp. 4219-4227. by Anselm A. Zdebik, Giovanni Zifarelli, Eun-Yeong Bergsdorf, et al.Paolo Soliani, Olaf Scheel, Thomas J. Jentsch, Michael Pusch posted to channel clc by franklu310 on 2009-08-09 08:44:37 as
	Experiments, calculation, computation: in a shifting balance [My Copy] Journal of Molecular Structure: THEOCHEM, Vol. 592, No. 1-3. (13 September 2002), pp. 1-6. by I. Hargittai posted to career by franklu310 on 2009-08-07 02:43:58 as
	Proton Transport Pathway in the ClC Cl/H+ Antiporter [My Copy] Vol. 97, No. 1. (8 July 2009), pp. 121-131. by Dong Wang, Gregory A. Voth posted to channel clc by franklu310 on 2009-08-05 22:03:46 as
	Breathing Motions of a Respiratory Protein Revealed by Molecular Dynamics Simulations [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Mariano A. Scorciapino, Arturo Robertazzi, Mariano Casu, Paolo Ruggerone, Matteo Ceccarelli posted to cavities by franklu310 on 2009-08-05 08:46:49 as along with 1 person mkrishna
	Surface Phonon Polaritons Mediated Energy Transfer between Nanoscale Gaps [My Copy] Nano Letters, Vol. 9, No. 8. (12 August 2009), pp. 2909-2913. by Sheng Shen, Arvind Narayanaswamy, Gang Chen posted to nano by franklu310 on 2009-08-02 05:20:57 as along with 2 people and 1 group findroot yse quantum chemistry
	Separate Ion Pathways in a Cl-/H+ Exchanger [My Copy] J. Gen. Physiol., Vol. 126, No. 6. (28 November 2005), pp. 563-570. by Alessio Accardi, Michael Walden, Wang Nguitragool, Hariharan Jayaram, Carole Williams, Christopher Miller posted to channel clc by franklu310 on 2009-08-01 00:32:27 as
	A provisional transport mechanism for a chloride channel-type Cl−/H+ exchanger [My Copy] Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 364, No. 1514. (27 January 2009), pp. 175-180. by Christopher Miller, Wang Nguitragool posted to channel clc by franklu310 on 2009-07-30 23:16:31 as
	Optimized Cluster Expansions for Classical Fluids. III. Applications to Ionic Solutions and Simple Liquids [My Copy] The Journal of Chemical Physics, Vol. 57, No. 7. (1972), pp. 2626-2631. by Hans C. Andersen, David Chandler, John D. Weeks posted to no-tag by franklu310 on 2009-07-07 23:51:04 as along with 1 group Soft Matter
	Optimized Cluster Expansions for Classical Fluids. I. General Theory and Variational Formulation of the Mean Spherical Model and Hard Sphere Percus-Yevick Equations [My Copy] The Journal of Chemical Physics, Vol. 57, No. 5. (1972), pp. 1918-1929. by Hans C. Andersen, David Chandler posted to no-tag by franklu310 on 2009-07-07 23:50:46 as along with 1 group Soft Matter
	Optimized Cluster Expansions for Classical Fluids. II. Theory of Molecular Liquids [My Copy] The Journal of Chemical Physics, Vol. 57, No. 5. (1972), pp. 1930-1937. by David Chandler, Hans C. Andersen posted to rism by franklu310 on 2009-07-07 21:39:29 as along with 1 group Soft Matter
	First Principle Theory for pKa Prediction at Molecular Level: pH Effects Based on Explicit Solvent Model [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 30. (30 July 2009), pp. 10509-10514. by Kentaro Kido, Hirofumi Sato, Shigeyoshi Sakaki posted to pka by franklu310 on 2009-07-07 09:42:33 as along with 4 people and 2 groups scampos qshao jmccammon whitead McCammon Jiang Research Group
	Theoretical Calculation of pKa Reveals an Important Role of Arg205 in the Activity and Stability of Streptomyces sp. N174 Chitosanase [My Copy] J. Biol. Chem. (26 May 2000), M002574200. by Tamo Fukamizo, Andre H. Juffer, Hans H. Vogel, et al.Yuji Honda, Hugo Tremblay, Isabelle Boucher, Witold A. Neugebauer, Ryszard Brzezinski posted to pka by franklu310 on 2009-07-06 09:45:34 as
	Very fast empirical prediction and rationalization of protein pK<SUB><FONT SIZE='-1'>a</FONT></SUB> values [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (1 December 2005), pp. 704-721. by Hui Li, Andrew D. Robertson, Jan H. Jensen posted to pka by franklu310 on 2009-07-02 02:08:46 as along with 9 people and 1 group flbarroso Martin8223 RamuAnandakrishnan gisle bicko sim82 barry sunhwan mschofie Bioinformatics
	Theoretical prediction of pKa values for methacrylic acid oligomers using combined quantum mechanical and continuum solvation methods. [My Copy] The journal of physical chemistry. A, Vol. 112, No. 49. (11 December 2008), pp. 12687-12694. by H. Dong, H. Du, X. Qian posted to pka by franklu310 on 2009-07-02 02:08:04 as
	Absolute and relative pKa calculations of mono and diprotic pyridines by quantum methods [My Copy] Journal of Molecular Structure: THEOCHEM (06 December 2008) by R. Casasnovas, J. Frau, J. Ortegacastro, A. Salva, J. Donoso, F. Munoz posted to pka by franklu310 on 2009-07-02 02:06:56 as
	Benchmarking pKa prediction [My Copy] BMC Biochemistry, Vol. 7 (02 June 2006), 18. by Matthew N. Davies, Christopher P. Toseland, David S. Moss, Darren R. Flower posted to pka by franklu310 on 2009-07-02 01:14:49 as along with 5 people zfekete bicko cat_worth sim82 RamuAnandakrishnan
	Benchmarking pKa Prediction Methods for Residues in Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 6. (1 June 2008), pp. 951-966. by Courtney L. Stanton, Kendall N. Houk posted to pka by franklu310 on 2009-07-02 01:01:36 as along with 4 people and 1 group scampos flbarroso onufriev sobolevnrm baker-group
	Improving the accuracy of protein pKa calculations: conformational averaging versus the average structure. [My Copy] Proteins, Vol. 33, No. 2. (1 November 1998), pp. 145-158. by H. W. van Vlijmen, M. Schaefer, M. Karplus posted to pka by franklu310 on 2009-07-02 00:57:36 as along with 2 people dfgreen RamuAnandakrishnan
	Calculating pKa values in enzyme active sites [My Copy] Protein Science, Vol. 12, No. 9. (1 September 2003), pp. 1894-1901. by Jens E. Nielsen, J. Andrew Mccammon posted to pka by franklu310 on 2009-07-02 00:55:36 as along with 5 people and 1 group girayenkavi tny boris_aguilar RamuAnandakrishnan qaiser_fatmi Chang group
	Unusual “Amphiphilic” Association of Hydrated Protons in Strong Acid Solution [My Copy] Journal of the American Chemical Society, Vol. 130, No. 10. (1 March 2008), pp. 3120-3126. by Feng Wang, Sergei Izvekov, Gregory A. Voth posted to ms-evb by franklu310 on 2009-07-01 21:52:54 as
	CLC chloride channels and transporters. [My Copy] Curr Opin Neurobiol, Vol. 15, No. 3. (June 2005), pp. 319-325. by T. J. Jentsch, I. Neagoe, O. Scheel posted to channel clc by franklu310 on 2009-07-01 21:01:03 as along with 1 person davidcsterratt
	Molecular structure and physiological function of chloride channels. [My Copy] Physiol Rev, Vol. 82, No. 2. (April 2002), pp. 503-568. by T. J. Jentsch, V. Stein, F. Weinreich, A. A. Zdebik posted to channel clc by franklu310 on 2009-07-01 20:57:53 as along with 2 people pgastrein AtoZ
	Ion channel diseases [My Copy] Hum Mol Genet, Vol. 11, No. 20. (2002), 2435-45. by C. A. Hubner, T. J. Jentsch posted to channel clc by franklu310 on 2009-07-01 20:57:28 as along with 1 person NatBlair
	Residues Important for Nitrate/Proton Coupling in Plant and Mammalian CLC Transporters [My Copy] J. Biol. Chem., Vol. 284, No. 17. (24 April 2009), pp. 11184-11193. by Eun-Yeong Bergsdorf, Anselm A. Zdebik, Thomas J. Jentsch posted to channel clc by franklu310 on 2009-07-01 20:52:50 as along with 1 person paulschlesinger
	Ten Simple Rules for Choosing between Industry and Academia [My Copy] PLoS Computational Biology, Vol. 5, No. 6. (26 June 2009), e1000388. by David B. Searls posted to career by franklu310 on 2009-07-01 20:06:34 as along with 36 people and 3 groups welliegirl Sergey_gerbek cyounkin Tomste Horduna aaltenburger Zephyrus CulCog thegoose Yanno timflutre tnhh PeteField MarcoAlvarez sobolevnrm Stew dbikard jasontsai casutton kieran101 chrisamiller rdiaz daveGerrard reyez neils marekrud Borelli psique kshameer gjuggler sdaehne flips ppgardne fgibson barry dullhunk Bioinformatics - CRUK Journal picks McCammon
	A multi-state empirical valence bond model for acid–base chemistry in aqueous solution [My Copy] Chemical Physics, Vol. 258, No. 2-3. (15 August 2000), pp. 187-199. by M. Cuma, Udo W. Schmitt, Gregory A. Voth posted to ms-evb by franklu310 on 2009-07-01 19:48:57 as
	CLC Cl−/H+ transporters constrained by covalent cross-linking [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20659-20665. by Wang Nguitragool, Christopher Miller posted to no-tag by franklu310 on 2009-07-01 07:49:55 as
	Proton-coupled gating in chloride channels [My Copy] Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 364, No. 1514. (27 January 2009), pp. 181-187. by Jiří Lísal, Merritt Maduke posted to channel clc by franklu310 on 2009-07-01 00:30:38 as
	Conversion of the 2 Cl/1 H+ antiporter ClC-5 in a NO3/H+ antiporter by a single point mutation [My Copy] (08 January 2009) by Giovanni Zifarelli, Michael Pusch posted to channel clc by franklu310 on 2009-06-26 02:35:53 as along with 1 person biomcgary
	The ClC-0 chloride channel is a 'broken' Cl-/H+ antiporter [My Copy] Nat Struct Mol Biol, Vol. 15, No. 8. (August 2008), pp. 805-810. by Jiri Lisal, Merritt Maduke posted to channel clc by franklu310 on 2009-06-26 02:28:25 as along with 1 person paulschlesinger
	The chloride channel's appendix [My Copy] Nat Struct Mol Biol, Vol. 15, No. 8. (2008), pp. 781-783. by Joseph A. Mindell posted to no-tag by franklu310 on 2009-06-26 02:20:43 as along with 1 person paulschlesinger
	Protons and how they are transported by proton pumps [My Copy] Pflugers Archiv European Journal of Physiology, Vol. 457, No. 3. (2009), pp. 573-579. by M. J. Buch-Pedersen, B. P. Pedersen, B. Veierskov, P. Nissen, M. G. Palmgren posted to file-import-09-06-25 by franklu310 on 2009-06-25 01:44:12 as
	A review about nothing: Are apolar cavities in proteins really empty? [My Copy] Protein Science, Vol. 18, No. 3. (2009), pp. 494-502. by Brian W. Matthews, Lijun Liu posted to channel clusters water by franklu310 on 2009-06-24 21:02:13 as along with 2 people viktor21614 krapnik
	CLC-mediated anion transport in plant cells [My Copy] Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 364, No. 1514. (27 January 2009), pp. 195-201. by Alexis De Angeli, Dario Monachello, Geneviève Ephritikhine, et al.Jean-Marie Frachisse, Sébastien Thomine, Franco Gambale, Hélène Barbier-Brygoo posted to channel clc by franklu310 on 2009-05-27 05:46:02 as
	Chloride channelopathies [My Copy] Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Vol. 1792, No. 3. (March 2009), pp. 173-189. by Rosa Planells-Cases, Thomas J. Jentsch posted to channel clc by franklu310 on 2009-05-27 05:44:37 as
	Physiological roles of CLC Cl−/H+ exchangers in renal proximal tubules [My Copy] Pflügers Archiv European Journal of Physiology by Vanessa Plans, Gesa Rickheit, Thomas Jentsch posted to channel clc by franklu310 on 2009-05-27 05:40:14 as
	Intracellular Proton-Transfer Mutants in a CLC Cl-/H+ Exchanger [My Copy] J. Gen. Physiol., Vol. 133, No. 2. (1 February 2009), pp. 131-138. by Hyun-Ho Lim, Christopher Miller posted to channel clc by franklu310 on 2009-05-27 05:37:28 as along with 1 person paulschlesinger
	A Multistate Empirical Valence Bond Description of Protonatable Amino Acids† [My Copy] The Journal of Physical Chemistry A, Vol. 110, No. 2. (1 January 2006), pp. 631-639. by Mark C. Maupin, Kim F. Wong, Alexander V. Soudackov, Sun Kim, Gregory A. Voth posted to ms-evb by franklu310 on 2009-05-26 22:15:55 as