frohike's library 764 articles Export

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	The Genetic Signatures of Noncoding RNAs [My Copy] PLoS Genet, Vol. 5, No. 4. (24 April 2009), e1000459. by John S. Mattick posted to ncrna microrna by frohike on 2009-09-03 19:24:08 as along with 21 people and 2 groups Zephyrus antonkratz bertelsen natstreet guhjy gdb giovenko galka8_diploma aditi9783 daforerog ealloza dpollard hrogers coela ilyashl fenghezi reyez maximilianh giovanni djkt stajich RockmanLab Mycology
	Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability [My Copy] Nat Rev Genet, Vol. 8, No. 8. (2007), pp. 639-646. by Jacques S. Beckmann, Xavier Estivill, Stylianos E. Antonarakis posted to arraycgh copy_number_variation genotype history human phenotype review by frohike on 2008-11-04 11:06:39 as along with 5 people and 1 group sameersoi gruberjd waszak rdiaz ryanraaum Bioinformatics
	Taking gene-expression profiling to the clinic: when will molecular signatures become relevant to patient care? [My Copy] Nature Reviews Cancer, Vol. 7, No. 7. (2007), pp. 545-553. by Christos Sotiriou, Martine J. Piccart posted to breast-cancer microarray profile review by frohike on 2008-09-17 13:49:15 as along with 5 people laral guhjy jfr bioyang giovanni
	Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes [My Copy] Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853. by Barbara E. Stranger, Matthew S. Forrest, Mark Dunning, et al.Catherine E. Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P. Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W. Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E. Hurles, Emmanouil T. Dermitzakis posted to cnv gene_expression microarray phenotype snp by frohike on 2008-08-08 10:32:17 as along with 31 people and 5 groups lp2 daveGerrard sameersoi timhubbard Zephyrus ajbattle jonilaserson ilyashl emptyhb buyske zufar koller waszak daed psique jo_davies srp33 guhjy jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu cisevol caseybrown jandot Roswell Cancer Crosstalk Visiting Position Bioinformatics EisenLab cis-regulatory-evolution
	SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Ramon D. Uriarte posted to feature multivariate selection signs software survival by frohike on 2008-01-28 14:21:58 as along with 4 people guhjy aalibes chad_davis jfr
	CancerGenes: a gene selection resource for cancer genome projects. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by M. E. Higgins, M. Claremont, J. E. Major, C. Sander, A. E. Lash posted to breast-cancer genes webtool by frohike on 2007-11-13 16:38:48 as along with 6 people mkotlyar guhjy textoris jfr massivemayhem cerami
	BRCA1 and BRCA2 mutation predictions using the BOADICEA and BRCAPRO models and penetrance estimation in high-risk French-Canadian families. [My Copy] Breast Cancer Res, Vol. 8, No. 1. (2006) by A. C. Antoniou, F. Durocher, P. Smith, J. Simard, D. F. Easton, posted to mutation brca2 brca1 by frohike on 2007-01-30 16:52:14 as
	Bias and efficiency in family-based gene-characterization studies: conditional, prospective, retrospective, and joint likelihoods. [My Copy] Am J Hum Genet, Vol. 66, No. 3. (March 2000), pp. 1119-1131. by P. Kraft, D. C. Thomas posted to mutation brca2 brca1 by frohike on 2007-01-30 16:45:04 as
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to snp human cnv by frohike on 2007-01-12 11:27:09 as along with 40 people and 7 groups lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. [My Copy] Genome research, Vol. 16, No. 12. (1 December 2006), pp. 1575-1584. by Daisuke Komura, Fan Shen, Shumpei Ishikawa, et al.Karen R. Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E. Hurles, Charles Lee, Stephen W. Scherer, Keith W. Jones, Michael H. Shapero, Jing Huang, Hiroyuki Aburatani posted to snp human cnv affymetrix by frohike on 2007-01-12 11:26:45 as along with 10 people and 4 groups shikin rdiaz waszak jfr dchughes giovanni jeremymiller vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	CYP2D6 genotype, antidepressant use, and tamoxifen metabolism during adjuvant breast cancer treatment. [My Copy] Journal of the National Cancer Institute, Vol. 97, No. 1. (5 January 2005), pp. 30-39. by Yan Jin, Zeruesenay Desta, Vered Stearns, et al.Bryan Ward, Herbert Ho, Kyung-Hoon H. Lee, Todd Skaar, Anna Maria M. Storniolo, Lang Li, Adjei Araba, Rebecca Blanchard, Anne Nguyen, Lynda Ullmer, Jill Hayden, Suzanne Lemler, Richard M. Weinshilboum, James M. Rae, Daniel F. Hayes, David A. Flockhart posted to breast-cancer snp by frohike on 2007-01-09 13:55:03 as along with 1 person misonneh
	BioNetBuilder: automatic integration of biological networks. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 3. (1 February 2007), pp. 392-393. by Iliana Avila-Campillo, Kevin Drew, John Lin, David J. J. Reiss, Richard Bonneau posted to cytoscape network software by frohike on 2006-12-11 10:10:56 as along with 2 people daforerog guhjy
	Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (02 June 2006), 280. by David Reiss, Nitin Baliga, Richard Bonneau posted to biclustering integration network regulatory by frohike on 2006-12-11 10:10:30 as along with 5 people parnell bozdagd surajitray tvdbulck tmmurali
	The Gaggle: an open-source software system for integrating bioinformatics software and data sources. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by P. T. Shannon, D. J. Reiss, R. Bonneau, N. S. Baliga posted to integration software by frohike on 2006-12-11 10:09:34 as along with 13 people and 3 groups Zephyrus Thaverkamp druvus seemu daforerog guhjy julius dullhunk jmuhlich cerami pablomendes waszak megraw Bioinformatics SysbioMPI-TCells SorgerLab
	The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo [My Copy] Genome Biology, Vol. 7, No. 5. (2006), R36. by Richard Bonneau, David Reiss, Paul Shannon, et al.Marc Facciotti, Leroy Hood, Nitin Baliga, Vesteinn Thorsson posted to inference network regulatory by frohike on 2006-12-11 10:08:48 as along with 7 people and 1 group lawraga ggallone cswinburne dragonrez jfr roys jo_davies Jarman Lab
	Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C Virus infection. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (20 June 2005) by David J. Reiss, Iliana Avila-Campillo, Vesteinn Thorsson, Benno Schwikowski, Timothy Galitski posted to disease pathway by frohike on 2006-12-11 10:06:52 as along with 2 people abhik tmmurali
	Integration of gene expression profiling and clinical variables to predict prostate carcinoma recurrence after radical prostatectomy. [My Copy] Cancer, Vol. 104, No. 2. (15 July 2005), pp. 290-298. by A. J. Stephenson, A. Smith, M. W. Kattan, et al.J. Satagopan, V. E. Reuter, P. T. Scardino, W. L. Gerald posted to breast-cancer clinical integration microarray prostate by frohike on 2006-10-31 10:59:41 as
	Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. [My Copy] Neoplasia (New York, N.Y.), Vol. 9, No. 2. (February 2007), pp. 166-180. by Daniel R. Rhodes, Shanker Kalyana-Sundaram, Vasudeva Mahavisno, et al.Radhika Varambally, Jianjun Yu, Benjamin B. Briggs, Terrence R. Barrette, Matthew J. Anstet, Colleen Kincead-Beal, Prakash Kulkarni, Sooryanaryana Varambally, Debashis Ghosh, Arul M. Chinnaiyan posted to breast-cancer microarray network oncomine pathway by frohike on 2007-09-27 16:42:34 as along with 6 people daforerog idonaldson mdharsee guhjy jfr waghsk
	Splice variants as cancer biomarkers. [My Copy] Clin Biochem, Vol. 37, No. 7. (July 2004), pp. 584-594. by B. M. Brinkman posted to breast-cancer alternative_splicing by frohike on 2007-01-04 16:28:41 as
	Bayesian machine learning and its potential applications to the genomic study of oral oncology. [My Copy] Adv Dent Res, Vol. 17 (December 2003), pp. 104-108. by P. Sebastiani, Y. H. Yu, M. F. Ramoni posted to bayesian-network oncology by frohike on 2006-10-31 10:45:49 as
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to bayesian-network modules regulatory by frohike on 2006-10-31 10:43:16 as along with 16 people and 1 group stharward myzhang wangbo Borelli ggrot dragonrez bayesian wnpx nickluscombe koller karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
	Linking oncogenic pathways with therapeutic opportunities [My Copy] Nature Reviews Cancer, Vol. 6, No. 9. (17 August 2006), pp. 735-741. by Andrea H. Bild, Anil Potti, Joseph R. Nevins posted to breast-cancer enrichment oncogenic oncology pathways by frohike on 2008-01-31 09:34:24 as along with 4 people aviad_work jackjackjjj srp33 jfr
	Epigenetic gene silencing in cancer – a mechanism for early oncogenic pathway addiction? [My Copy] Nature Reviews Cancer, Vol. 6, No. 2., pp. 107-116. by Stephen B. Baylin, Joyce E. Ohm posted to breast-cancer methylation epigenetics by frohike on 2007-01-19 10:29:50 as along with 1 person giovenko
	MALDI Profiling of Human Lung Cancer Subtypes [My Copy] PLoS ONE, Vol. 4, No. 11. (5 November 2009), e7731. by Angelo Gámez-Pozo, Iker Sánchez-Navarro, Manuel Nistal, et al.Enrique Calvo, Rosario Madero, Esther Díaz, Emilio Camafeita, Javier de Castro, Juan A. López, Manuel González-Barón, Enrique Espinosa, Juan Fresno Vara posted to proteomics maldi lung_cancer by frohike on 2009-11-06 10:03:53 as along with 1 person torfinnnome
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [My Copy] Science (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to technology sequencing second_generation_sequencing by frohike on 2009-11-06 09:13:00 as along with 4 people heliopais rwst orzenil zufar
	Phenopedia and Genopedia: Disease-centered and Gene-centered Views of the Evolving Knowledge of Human Genetic Associations [My Copy] Bioinformatics (30 October 2009), btp618. by W. Yu, M. Clyne, M. J. Khoury, M. Gwinn posted to genome_wide_association genetic_associations epidemiology disease_network disease_gene_network by frohike on 2009-11-02 11:41:48 as
	An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1005-1011. by Xiao-Song Wang, John R. Prensner, Guoan Chen, et al.Qi Cao, Bo Han, Saravana M. Dhanasekaran, Rakesh Ponnala, Xuhong Cao, Sooryanarayana Varambally, Dafydd G. Thomas, Thomas J. Giordano, David G. Beer, Nallasivam Palanisamy, Maureen A. Sartor, Gilbert S. Omenn, Arul M. Chinnaiyan posted to sequencing second_generation_sequencing lung_cancer fusions cell_line cancer_genome by frohike on 2009-11-02 11:23:51 as along with 3 people and 1 group torfinnnome qayub chvlyl Journal picks
	TransmiR: a transcription factor-microRNA regulation database. [My Copy] Nucleic acids research (28 September 2009), gkp803. by Juan Wang, Ming Lu, Chengxiang Qiu, Qinghua Cui posted to transcription_factor mirna microrna databse by frohike on 2009-10-29 16:31:06 as along with 6 people and 2 groups daforerog epinatel heliopais ealloza samgj tonamswish cube_and_beyond microRNA
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted to howto guide by frohike on 2009-10-29 10:35:15 as along with 52 people and 7 groups Yanno aaltenburger marekrud guhjy dolchan operon CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom wei_tang fenghezi cisevol barry sdaehne druvus Pedro Martinez EvoDevo lab Barcelona Orengo Group Journal Picks Bioinformatics - CRUK ccsbs BergmanLab structural_bioinformatics McCammon
	Bioinformatics construction of the human cell surfaceome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 39. (29 September 2009), pp. 16752-16757. by J. P. da Cunha, P. A. Galante, J. E. de Souza, et al.R. F. de Souza, P. M. Carvalho, D. T. Ohara, R. P. Moura, S. M. Oba-Shinja, S. K. Marie, W. A. Silva, R. O. Perez, B. Stransky, M. Pieprzyk, J. Moore, O. Caballero, J. Gama-Rodrigues, A. Habr-Gama, W. P. Kuo, A. J. Simpson, A. A. Camargo, Lloyd J. Old, S. J. de Souza posted to membrane glioma glioblastoma colorectal_cancer colon_cancer cell_surface_proteins by frohike on 2009-10-28 08:29:04 as along with 3 people tonamswish renatomilani phoenixzxl
	Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 354. by Aristotelis Chatziioannou, Panagiotis Moulos, Fragiskos Kolisis posted to software microarray_data_analysis matlab by frohike on 2009-10-27 11:24:21 as along with 2 people dswan erexhepa
	Can Survival Prediction Be Improved By Merging Gene Expression Data Sets? [My Copy] PLoS ONE, Vol. 4, No. 10. (23 October 2009), e7431. by Haleh Yasrebi, Peter Sperisen, Viviane Praz, Philipp Bucher posted to for:jfr survival roc_curve meta_analysis cox_regression breast_cancer by frohike on 2009-10-23 13:37:49 as along with 1 person installe
	Accurate confidence aware clustering of array CGH tumor profiles. [My Copy] Bioinformatics (Oxford, England) (21 October 2009), btp603. by Bart P. van Houte, Jaap Heringa posted to fuzzy confidence_measure clustering cancer arraycgh by frohike on 2009-10-22 08:03:39 as along with 1 person shigepong
	Comprehensive Gene and microRNA Expression Profiling Reveals a Role for microRNAs in Human Liver Development [My Copy] PLoS ONE, Vol. 4, No. 10. (20 October 2009), e7511. by Galit Tzur, Ariel Israel, Asaf Levy, et al.Hila Benjamin, Eti Meiri, Yoel Shufaro, Karen Meir, Elina Khvalevsky, Yael Spector, Nathan Rojansky, Zvi Bentwich, Benjamin E. Reubinoff, Eithan Galun posted to paired_samples mirna microrna liver by frohike on 2009-10-20 11:15:35 as
	Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression [My Copy] Molecular Systems Biology, Vol. 5 (13 October 2009) by Larsson Omberg, Joel R. Meyerson, Kayta Kobayashi, Lucy S. Drury, John F. X. Diffley, Orly Alter posted to yeast tensor svd microarray_data cell_cycle by frohike on 2009-10-19 09:46:47 as along with 1 person installe
	A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18371-18376. by Larsson Omberg, Gene H. Golub, Orly Alter posted to tensor svd microarray_data by frohike on 2009-10-19 09:46:02 as along with 3 people and 1 group tmmurali mikaelhuss wsjames Oxford Virology
	Amphiregulin and Epiregulin mRNA Expression in Primary Tumors Predicts Outcome in Metastatic Colorectal Cancer Treated With Cetuximab [My Copy] J Clin Oncol, Vol. 27, No. 30. (20 October 2009), pp. 5068-5074. by Bart Jacobs, Wendy De Roock, Hubert Piessevaux, et al.Robin Van Oirbeek, Bart Biesmans, Jef De Schutter, Steffen Fieuws, Jo Vandesompele, Marc Peeters, Jean-Luc Van Laethem, Yves Humblet, Frederique Penault-Llorca, Gert De Hertogh, Pierre Laurent-Puig, Eric Van Cutsem, Sabine Tejpar posted to therapy microarray_data metastases epiregulin colorectal_cancer colon_cancer cetuximab amphiregulin by frohike on 2009-10-18 16:59:04 as
	INTERSNP: Genome-wide Interaction Analysis Guided by A Priori Information [My Copy] Bioinformatics (16 October 2009), btp596. by Christine Herold, Michael Steffens, Felix F. Brockschmidt, Max P. Baur, Tim Becker posted to snp priors pathway network gwas by frohike on 2009-10-18 16:55:26 as
	NAViGaTOR: Network Analysis, Visualization & Graphing Toronto [My Copy] Bioinformatics (16 October 2009), btp595. by Kevin R. Brown, David Otasek, Muhammad Ali, et al.Michael McGuffin, Wing Xie, Baiju Devani, Ian L. van Toch, Igor Jurisica posted to visualization software network_analysis layout_algorithms by frohike on 2009-10-18 16:52:42 as along with 1 person ngehlenborg
	An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors [My Copy] Oncogene, Vol. 28, No. 31. (15 June 2009), pp. 2773-2783. by D. Chitale, Y. Gong, B. S. Taylor, et al.S. Broderick, C. Brennan, R. Somwar, B. Golas, L. Wang, N. Motoi, J. Szoke, J. M. Reinersman, J. Major, C. Sander, V. E. Seshan, M. F. Zakowski, V. Rusch, W. Pao, W. Gerald, M. Ladanyi posted to microarray_data lung_cancer integration egfr dusp copy_number_variation by frohike on 2009-10-16 17:58:44 as
	Classification and biomarker identification using gene network modules and support vector machines. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (15 October 2009), 337. by Malik Yousef, Mohamed Ketany, Larry Manevitz, Louise C. Showe, Michael K. Showe posted to svm gene_network classification biomarker by frohike on 2009-10-16 13:56:13 as along with 4 people and 1 group sillitoe ptrobajo ashishanand manduca Orengo Group Journal Picks
	MicroRNA dynamics in the stages of tumorigenesis correlate with hallmark capabilities of cancer. [My Copy] Genes & development, Vol. 23, No. 18. (15 September 2009), pp. 2152-2165. by Peter Olson, Jun Lu, Hao Zhang, et al.Anny Shai, Matthew G. Chun, Yucheng Wang, Steven K. Libutti, Eric K. Nakakura, Todd R. Golub, Douglas Hanahan posted to reference-mir-transcriptome mirna microrna cancer by frohike on 2009-10-15 09:06:36 as along with 2 people and 1 group heliopais valeriehilgers microRNA
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to genome 3d-structure by frohike on 2009-10-15 08:33:23 as along with 30 people and 3 groups alhufton psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge roys rdiaz daveGerrard colinveal nrk891 zwang timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	Identification of Novel Kinase Targets for the Treatment of Estrogen ReceptorâNegative Breast Cancer [My Copy] Clinical Cancer Research, Vol. 15, No. 20. (15 October 2009), pp. 6327-6340. by Corey Speers, Anna Tsimelzon, Krystal Sexton, et al.Ashley M. Herrick, Carolina Gutierrez, Aedin Culhane, John Quackenbush, Susan Hilsenbeck, Jenny Chang, Powel Brown posted to for:jfr kinase estrogen_receptor drug breast_cancer by frohike on 2009-10-15 08:28:09 as
	Human DNA methylomes at base resolution show widespread epigenomic differences. [My Copy] Nature, Vol. advance online publication (14 October 2009) by Ryan Lister, Mattia Pelizzola, Robert H. Dowen, et al.R. David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R. Nery, Leonard Lee, Zhen Ye, Que-Minh M. Ngo, Lee Edsall, Jessica Antosiewicz-Bourget, Ron Stewart, Victor Ruotti, A. Harvey Millar, James A. Thomson, Bing Ren, Joseph R. Ecker posted to reference_methylome methylome methylation epigenetics by frohike on 2009-10-15 08:11:52 as along with 12 people and 4 groups clearbluespring rschulz RyuOgawa hagechouchin443 devinmhellesen daveGerrard polivares dswan fenghezi colinveal liqbbi ethanmj JLab CTCF BergmanLab Journal picks
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted to normal human_genome copy_number_variation cnv by frohike on 2009-10-14 12:14:11 as along with 16 people and 1 group psique chvlyl daed daforerog zufar jessopher DrRichardBadge operon colinveal sf11 sameersoi polivares dswan qayub bpcusack rdiaz Journal picks
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution [My Copy] Nature, Vol. 461, No. 7265. (08 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, Rene L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to snp sequencing next_generation mutation breast-cancer by frohike on 2009-10-14 12:09:55 as along with 11 people and 2 groups jwfoley stubrown chvlyl giovenko brianb Zephyrus jsuchit mkiyer torfinnnome merpublic djkt Chinnaiyan Lab Journal picks
	Causes and consequences of microRNA dysregulation in cancer [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (01 October 2009), pp. 704-714. by Carlo M. Croce posted to review mirna microrna cancer by frohike on 2009-10-14 11:44:40 as along with 9 people and 1 group heliopais pattersonee tonamswish valeriehilgers chrisamiller giovenko megraw ealloza misonneh microRNA
	Lost in translation: an assessment and perspective for computational microRNA target identification. [My Copy] Bioinformatics (Oxford, England) (29 September 2009), btp565. by Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou posted to review mirna_target_prediction mirna microrna experimental_identification by frohike on 2009-10-14 11:13:34 as along with 2 people lp2 daforerog
	ncRNAppi - A tool for identifying disease-related miRNA and siR-NA targeting pathways. [My Copy] Bioinformatics (Oxford, England) (6 October 2009), btp574. by Ka-Lok L. Ng, Hsueh-Chuan C. Liu, Shan-Chih C. Lee posted to tool tissue_specific software pathway mirna microrna by frohike on 2009-10-14 11:11:48 as along with 1 person daforerog

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breast-cancer	221
microarray	100
bayesian-network	66
ovarian_cancer	49
microarray_data_analysis	47
arraycgh	42
proteomics	39
network	36
database	32
microrna	31
prognosis	29
signature	29
review	24
integration	22
lung_cancer	22
microarray_data	22
sequencing	22
software	21
snp	20
human	18
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pathway	17
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cancer	16
methylation	16
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mutation	15
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biomarker	13
cetuximab	13
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disease	13
metabolomics	13
mirna	13
second_generation_sequencing	13
cnv	12
copy_number_variation	12
protein	12
protein_interaction_network	12
signatures	12
treatment	12
drug	11
seldi	11
brca1	10
methylome	10
online	10
priors	10
svm	10
affymetrix	9
alternative_splicing	9
gene	9
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interaction	9
ismb2008	9
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book	8
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cdna	8
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gsea	8
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pathways	8
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tool	8
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egfr	7
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maldi	7
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gene_expression	6
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profile	6
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tutorial	6
yeast	6
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70-gene	5
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iota	5
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roc	5
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tp53	5
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kernel	4
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p53	4
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therapy	4
transcription_factor	4
tumor	4
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vandevijver	4
76-gene	3
ai	3
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basal	3
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file-import-08-11-18	3
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stroma	3
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tumour	3
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vector	3
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kinase	2
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msigdb_geneset	2
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ode	2
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ovacheck	2
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psb2008	2
r	2
rate	2
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st	2
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tap	2
tensor	2
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trial	2
variable	2
vegf	2
website	2
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454	1
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ferritin	1
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figure	1
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g-csf	1
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gene_fusion	1
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gfra1	1
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glutamine	1
go	1
google_scholar	1
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guide	1
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hdac	1
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hub	1
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igs	1
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ihpk2	1
il4	1
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indentifification	1
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java	1
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kernel_method	1
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killer	1
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location	1
logic	1
logistic	1
luminex	1
macbeth	1
machine	1
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mdm4	1
membrane	1
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monte	1
motif	1
mouse	1
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multi_scale_modeling	1
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ncbi	1
ncrna	1
necrosis	1
neo1	1
nerve_fiber	1
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node_positive	1
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note	1
nottingham	1
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number	1
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omicsnetworks	1
oncogene_addiction	1
oncogenic	1
oncomine	1
oncotypedx	1
ontology	1
ophid	1
origin	1
outcojme	1
overtreatment	1
overview	1
p	1
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parallelel	1
parp	1
parp_inhibitor	1
party_hub	1
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pearson_correlation	1
perturbed	1
pet	1
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phd_geert_fannes	1
pik3ca	1
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population	1
porter	1
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protein_kinase	1
protein_kinases	1
pten	1
pubmed	1
pul	1
q1	1
q2	1
random_forest	1
ras	1
raster	1
reference_methylome	1
reference-mir-transcriptome	1
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refmanager	1
region	1
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rembrandt	1
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rotterdam	1
rpackage	1
rt_pcr	1
rupture	1
sbgn	1
scopus	1
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secretory	1
seed_and_soil	1
segal	1
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sequences	1
sequence_venter	1
sequence_watson	1
set	1
signature_candidate	1
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signs	1
simpleaffy	1
small_molecule	1
soft_laser_desorption	1
solid	1
space	1
splicing_machinery	1
stage	1
standarization	1
stemmer	1
structure_learning	1
support	1
support_vector_machine	1
survivin	1
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tab_delimited	1
tablebuttler	1
tables	1
tamoxifen	1
teratoma	1
textbook	1
thesis	1
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thyroid_cancer	1
thyroid_stimulating_hormone	1
tiling_array	1
tiling_microarray	1
tnfalpha	1
traditional_treatment	1
transcriptomics	1
translocation	1
trastuzumab	1
tree	1
tshr	1
tumors	1
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tumours	1
uk	1
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variation	1
veer	1
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vocabularium	1
web_of_science	1
weka	1
wheeler	1
whichgenes	1
wikipathways	1
windows	1
wisp1	1
wnt	1

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