CiteULike: frohike's integration [22 articles]

An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors

Oncogene, Vol. 28, No. 31. (15 June 2009), pp. 2773-2783.

by D. Chitale, Y. Gong, B. S. Taylor, et al.S. Broderick, C. Brennan, R. Somwar, B. Golas, L. Wang, N. Motoi, J. Szoke, J. M. Reinersman, J. Major, C. Sander, V. E. Seshan, M. F. Zakowski, V. Rusch, W. Pao, W. Gerald, M. Ladanyi

posted to copy-number-variation microarray_data lung_cancer integration egfr dusp by frohike on 2009-10-16 17:58:44 as

Discovery and development of biomarkers of neurological disease.

Drug discovery today, Vol. 10, No. 5. (1 March 2005), pp. 326-334.

by T. Dunckley, K. D. Coon, D. A. Stephan

posted to alzheimer brain data_integration integration omics by frohike on 2009-07-08 11:54:54 as

Identification of deregulated oncogenic pathways in renal cell carcinoma: an integrated oncogenomic approach based on gene expression profiling

Oncogene, Vol. 26, No. 9. (26 February 2007), pp. 1346-1350.

by K. A. Furge, M. H. Tan, K. Dykema, et al.E. Kort, W. Stadler, X. Yao, M. Zhou, B. T. Teh

posted to arraycgh data_integration integration kidney_cancer microarray renal_cancer by frohike on 2009-02-15 20:57:31 as

along with 1 person mingzhi

The interactions between clinical informatics and bioinformatics: a case study.

Journal of the American Medical Informatics Association : JAMIA, Vol. 7, No. 5. (t 2000), pp. 439-443.

by R. B. Altman

posted to clinical_microarray integration by frohike on 2008-08-29 12:48:25 as

Bioinformatics and clinical informatics: the imperative to collaborate.

Journal of the American Medical Informatics Association : JAMIA, Vol. 7, No. 5. (t 2000), pp. 512-516.

by I. S. Kohane

posted to clinical_microarray integration by frohike on 2008-08-29 12:43:39 as

At the interfaces of epidemiology, genetics and genomics.

Nature reviews. Genetics, Vol. 2, No. 2. (February 2001), pp. 142-147.

by J. D. Potter

posted to clinical_microarray epidemiology genetics genomics integration by frohike on 2008-08-29 12:40:51 as

Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes

Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 22. (1 June 2004), pp. 8431-8436.

by Jennifer Pittman, Erich Huang, Holly Dressman, et al.Cheng-Fang Horng, Skye H. Cheng, Mei-Hua Tsou, Chii-Ming Chen, Andrea Bild, Edwin S. Iversen, Andrew T. Huang, Joseph R. Nevins, Mike West

posted to clinical integration microarray personalized_medicine by frohike on 2008-08-21 11:27:44 as

along with 3 people simonmcbride ldfu wnpx

High-dimensional biology to comprehend hepatocellular carcinoma

Expert Review of Proteomics, Vol. 5, No. 1. (February 2008), pp. 45-60.

by Vivekanandan, Perumal, Singh, V. Om

posted to hepatocellular_carcinoma integration omics by frohike on 2008-07-04 11:12:45 as

along with 1 person guhjy

Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes

Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 889-896.

by Hyunju Lee, Sek W. Kong, Peter J. Park

posted to biclustering geneset integration microarray module arraycgh by frohike on 2008-05-15 10:41:46 as

along with 9 people yina rdiaz Zephyrus jfr jcaddy ealloza barriot ptrobajo srp33

M-BISON: microarray-based integration of data sources using networks

BMC Bioinformatics, Vol. 9 (25 April 2008), 214.

by Bernie J. Daigle, Russ B. Altman

posted to graphical integration microarray by frohike on 2008-05-09 15:55:26 as

along with 2 people jfr guhjy

Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 279-290.

by O. Gevaert, S. Van Vooren, B. de Moor

posted to bayesian-network integration literature microarray by frohike on 2008-04-07 14:49:29 as

along with 2 people and 1 group mitko jfr Bioinformatics

A Framework for Elucidating Regulatory Networks Based on Prior Information and Expression Data

Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 240-248.

by Olivier Gevaert, Steven Van Vooren, Bart De Moor

posted to bayesian-network dream integration microarray priors protein by frohike on 2008-04-07 14:48:49 as

along with 1 person and 1 group guhjy Bioinformatics

Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks

Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e184-e190.

by O. Gevaert, F. D. Smet, D. Timmerman, Y. Moreau, B. D. Moor

posted to breast-cancer bayesian-network integration network by frohike on 2007-09-18 16:10:46 as read

along with 7 people installe phoenixzxl jfr wnpx welchr macavity1g srp33

Combining location and expression data for principled discovery of genetic regulatory network models.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2002), pp. 437-449.

by Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young

posted to bayesian-network integration interaction network priors protein by frohike on 2007-07-16 10:44:21 as

along with 6 people stharward brl ldfu wnpx noano naegele

Discovering regulatory and signalling circuits in molecular interaction networks.

Bioinformatics (Oxford, England), Vol. 18, No. Suppl 1. (1 July 2002), pp. S233-S240.

by T. Ideker, O. Ozier, B. Schwikowski, A. F. Siegel

posted to integration interaction network protein by frohike on 2007-07-16 10:19:47 as

along with 15 people and 2 groups myzhang tmmurali akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano koller carlk kdl Bioinformatics

Gene prioritization through genomic data fusion

Nat Biotech, Vol. 24, No. 5. (05 May 2006), pp. 537-544.

by Stein Aerts, Diether Lambrechts, Sunit Maity, et al.Peter Van Loo, Bert Coessens, Frederik De Smet, Leon-Charles Tranchevent, Bart De Moor, Peter Marynen, Bassem Hassan, Peter Carmeliet, Yves Moreau

posted to integration kernel protein by frohike on 2007-07-12 14:57:04 as

along with 11 people and 2 groups carlk jandot daforerog saket jiny jfr balajis dchughes winterschlaefer barriot srp33 G4ID Genetics-of-Gambling

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

BMC Bioinformatics, Vol. 7, No. 1. (02 June 2006), 280.

by David Reiss, Nitin Baliga, Richard Bonneau

posted to biclustering integration network regulatory by frohike on 2006-12-11 10:10:30 as

along with 6 people meanerelk parnell bozdagd surajitray tvdbulck tmmurali

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

BMC Bioinformatics, Vol. 7 (2006)

by P. T. Shannon, D. J. Reiss, R. Bonneau, N. S. Baliga

posted to integration software by frohike on 2006-12-11 10:09:34 as

along with 13 people and 3 groups Zephyrus Thaverkamp druvus seemu daforerog guhjy julius dullhunk jmuhlich cerami pablomendes waszak megraw Bioinformatics SysbioMPI-TCells SorgerLab

Integration of gene expression profiling and clinical variables to predict prostate carcinoma recurrence after radical prostatectomy.

Cancer, Vol. 104, No. 2. (15 July 2005), pp. 290-298.

by A. J. Stephenson, A. Smith, M. W. Kattan, et al.J. Satagopan, V. E. Reuter, P. T. Scardino, W. L. Gerald

posted to breast-cancer clinical integration microarray prostate by frohike on 2006-10-31 10:59:41 as

Using literature and data to learn Bayesian networks as clinical models of ovarian tumours.

Artif Intell Med, Vol. 30 (2004), pp. 257-81.

by P. Antal, G. Fannes, D. Timmerman, Y. Moreau, B. De Moor

posted to breast-cancer bayesian-network integration literature text ovarian_cancer by frohike on 2006-10-31 10:05:49 as

A statistical framework for genomic data fusion

Bioinformatics, Vol. 20, No. 16. (2004), pp. 2626-2635.

by Gert R. G. Lanckriet, Tijl De Bie, Nello Cristianini, Michael I. Jordan, William S. Noble

posted to integration kernel by frohike on 2006-10-31 10:05:48 as

A data integration methodology for systems biology

PNAS, Vol. 102, No. 48. (2005), pp. 17296-17301.

by Daehee Hwang, Alistair G. Rust, Stephen Ramsey, et al.Jennifer J. Smith, Deena M. Leslie, Andrea D. Weston, Pedro de Atauri, John D. Aitchison, Leroy Hood, Andrew F. Siegel, Hamid Bolouri

posted to integration by frohike on 2006-10-31 10:05:48 as

	An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors [My Copy] Oncogene, Vol. 28, No. 31. (15 June 2009), pp. 2773-2783. by D. Chitale, Y. Gong, B. S. Taylor, et al.S. Broderick, C. Brennan, R. Somwar, B. Golas, L. Wang, N. Motoi, J. Szoke, J. M. Reinersman, J. Major, C. Sander, V. E. Seshan, M. F. Zakowski, V. Rusch, W. Pao, W. Gerald, M. Ladanyi posted to copy-number-variation microarray_data lung_cancer integration egfr dusp by frohike on 2009-10-16 17:58:44 as
	Discovery and development of biomarkers of neurological disease. [My Copy] Drug discovery today, Vol. 10, No. 5. (1 March 2005), pp. 326-334. by T. Dunckley, K. D. Coon, D. A. Stephan posted to alzheimer brain data_integration integration omics by frohike on 2009-07-08 11:54:54 as
	Identification of deregulated oncogenic pathways in renal cell carcinoma: an integrated oncogenomic approach based on gene expression profiling [My Copy] Oncogene, Vol. 26, No. 9. (26 February 2007), pp. 1346-1350. by K. A. Furge, M. H. Tan, K. Dykema, et al.E. Kort, W. Stadler, X. Yao, M. Zhou, B. T. Teh posted to arraycgh data_integration integration kidney_cancer microarray renal_cancer by frohike on 2009-02-15 20:57:31 as along with 1 person mingzhi
	The interactions between clinical informatics and bioinformatics: a case study. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 7, No. 5. (t 2000), pp. 439-443. by R. B. Altman posted to clinical_microarray integration by frohike on 2008-08-29 12:48:25 as
	Bioinformatics and clinical informatics: the imperative to collaborate. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 7, No. 5. (t 2000), pp. 512-516. by I. S. Kohane posted to clinical_microarray integration by frohike on 2008-08-29 12:43:39 as
	At the interfaces of epidemiology, genetics and genomics. [My Copy] Nature reviews. Genetics, Vol. 2, No. 2. (February 2001), pp. 142-147. by J. D. Potter posted to clinical_microarray epidemiology genetics genomics integration by frohike on 2008-08-29 12:40:51 as
	Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 22. (1 June 2004), pp. 8431-8436. by Jennifer Pittman, Erich Huang, Holly Dressman, et al.Cheng-Fang Horng, Skye H. Cheng, Mei-Hua Tsou, Chii-Ming Chen, Andrea Bild, Edwin S. Iversen, Andrew T. Huang, Joseph R. Nevins, Mike West posted to clinical integration microarray personalized_medicine by frohike on 2008-08-21 11:27:44 as along with 3 people simonmcbride ldfu wnpx
	High-dimensional biology to comprehend hepatocellular carcinoma [My Copy] Expert Review of Proteomics, Vol. 5, No. 1. (February 2008), pp. 45-60. by Vivekanandan, Perumal, Singh, V. Om posted to hepatocellular_carcinoma integration omics by frohike on 2008-07-04 11:12:45 as along with 1 person guhjy
	Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes [My Copy] Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 889-896. by Hyunju Lee, Sek W. Kong, Peter J. Park posted to biclustering geneset integration microarray module arraycgh by frohike on 2008-05-15 10:41:46 as along with 9 people yina rdiaz Zephyrus jfr jcaddy ealloza barriot ptrobajo srp33
	M-BISON: microarray-based integration of data sources using networks [My Copy] BMC Bioinformatics, Vol. 9 (25 April 2008), 214. by Bernie J. Daigle, Russ B. Altman posted to graphical integration microarray by frohike on 2008-05-09 15:55:26 as along with 2 people jfr guhjy
	Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 279-290. by O. Gevaert, S. Van Vooren, B. de Moor posted to bayesian-network integration literature microarray by frohike on 2008-04-07 14:49:29 as along with 2 people and 1 group mitko jfr Bioinformatics
	A Framework for Elucidating Regulatory Networks Based on Prior Information and Expression Data [My Copy] Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 240-248. by Olivier Gevaert, Steven Van Vooren, Bart De Moor posted to bayesian-network dream integration microarray priors protein by frohike on 2008-04-07 14:48:49 as along with 1 person and 1 group guhjy Bioinformatics
	Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e184-e190. by O. Gevaert, F. D. Smet, D. Timmerman, Y. Moreau, B. D. Moor posted to breast-cancer bayesian-network integration network by frohike on 2007-09-18 16:10:46 as along with 7 people installe phoenixzxl jfr wnpx welchr macavity1g srp33
	Combining location and expression data for principled discovery of genetic regulatory network models. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2002), pp. 437-449. by Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young posted to bayesian-network integration interaction network priors protein by frohike on 2007-07-16 10:44:21 as along with 6 people stharward brl ldfu wnpx noano naegele
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. Suppl 1. (1 July 2002), pp. S233-S240. by T. Ideker, O. Ozier, B. Schwikowski, A. F. Siegel posted to integration interaction network protein by frohike on 2007-07-16 10:19:47 as along with 15 people and 2 groups myzhang tmmurali akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano koller carlk kdl Bioinformatics
	Gene prioritization through genomic data fusion [My Copy] Nat Biotech, Vol. 24, No. 5. (05 May 2006), pp. 537-544. by Stein Aerts, Diether Lambrechts, Sunit Maity, et al.Peter Van Loo, Bert Coessens, Frederik De Smet, Leon-Charles Tranchevent, Bart De Moor, Peter Marynen, Bassem Hassan, Peter Carmeliet, Yves Moreau posted to integration kernel protein by frohike on 2007-07-12 14:57:04 as along with 11 people and 2 groups carlk jandot daforerog saket jiny jfr balajis dchughes winterschlaefer barriot srp33 G4ID Genetics-of-Gambling
	Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (02 June 2006), 280. by David Reiss, Nitin Baliga, Richard Bonneau posted to biclustering integration network regulatory by frohike on 2006-12-11 10:10:30 as along with 6 people meanerelk parnell bozdagd surajitray tvdbulck tmmurali
	The Gaggle: an open-source software system for integrating bioinformatics software and data sources. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by P. T. Shannon, D. J. Reiss, R. Bonneau, N. S. Baliga posted to integration software by frohike on 2006-12-11 10:09:34 as along with 13 people and 3 groups Zephyrus Thaverkamp druvus seemu daforerog guhjy julius dullhunk jmuhlich cerami pablomendes waszak megraw Bioinformatics SysbioMPI-TCells SorgerLab
	Integration of gene expression profiling and clinical variables to predict prostate carcinoma recurrence after radical prostatectomy. [My Copy] Cancer, Vol. 104, No. 2. (15 July 2005), pp. 290-298. by A. J. Stephenson, A. Smith, M. W. Kattan, et al.J. Satagopan, V. E. Reuter, P. T. Scardino, W. L. Gerald posted to breast-cancer clinical integration microarray prostate by frohike on 2006-10-31 10:59:41 as
	Using literature and data to learn Bayesian networks as clinical models of ovarian tumours. [My Copy] Artif Intell Med, Vol. 30 (2004), pp. 257-81. by P. Antal, G. Fannes, D. Timmerman, Y. Moreau, B. De Moor posted to breast-cancer bayesian-network integration literature text ovarian_cancer by frohike on 2006-10-31 10:05:49 as
	A statistical framework for genomic data fusion [My Copy] Bioinformatics, Vol. 20, No. 16. (2004), pp. 2626-2635. by Gert R. G. Lanckriet, Tijl De Bie, Nello Cristianini, Michael I. Jordan, William S. Noble posted to integration kernel by frohike on 2006-10-31 10:05:48 as
	A data integration methodology for systems biology [My Copy] PNAS, Vol. 102, No. 48. (2005), pp. 17296-17301. by Daehee Hwang, Alistair G. Rust, Stephen Ramsey, et al.Jennifer J. Smith, Deena M. Leslie, Andrea D. Weston, Pedro de Atauri, John D. Aitchison, Leroy Hood, Andrew F. Siegel, Hamid Bolouri posted to integration by frohike on 2006-10-31 10:05:48 as

frohike's integration [22 articles] Export

frohike's tags

breast-cancer	224
microarray	100
bayesian-network	66
microarray_data_analysis	50
ovarian_cancer	50
arraycgh	42
proteomics	41
network	36
database	33
microrna	31
prognosis	29
signature	29
review	25
sequencing	24
microarray_data	23
software	23
integration	22
lung_cancer	22
mirna	20
snp	20
cancer	19
epigenetics	18
human	18
mass_spectrometry	17
methylation	17
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mutation	16
rectal_cancer	16
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classification	15
biomarker	14
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cetuximab	13
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metabolomics	13
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cnv	12
copy-number-variation	12
protein	12
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methylome	11
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