CiteULike: frohike's regulatory [17 articles]

Bayesian Network Analysis of Signaling Networks: A Primer

Sci. STKE, Vol. 2005, No. 281. (26 April 2005), pl4.

posted to bayesian-network gene_network primer regulatory reverse_engineering_gene_networks by frohike on 2009-02-09 16:18:47 as

along with 8 people abhishek_tiwari ptrobajo saman_vp tmmurali Borelli ryang wnpx jhatrimatri

Inferring transcriptional networks by mining 'omics' data

Current bioinformatics, Vol. , No. 3. (2006)

by T. Van den Bulcke, K. Lemmens, Y. Van de Peer, K. Marchal

posted to algorithms network refmanager regulatory review by frohike on 2008-06-03 11:07:53 as

Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical Gaussian models and Bayesian networks.

Bioinformatics (14 July 2006)

by Adriano V V. Werhli, Marco Grzegorczyk, Dirk Husmeier

posted to bayesian-network benchmark regulatory by frohike on 2008-02-01 10:03:33 as

along with 3 people wnpx edwardmorrissey roys

Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks.

Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2271-2282.

by D. Husmeier

posted to bayesian-network benchmark microarray network regulatory by frohike on 2008-02-01 10:02:41 as

along with 3 people Borelli wnpx edwardmorrissey

Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks

BMC Bioinformatics, Vol. 8, No. 1. (2007)

by Chang S. Kim

posted to bayesian-network regulatory by frohike on 2008-02-01 10:02:10 as

along with 4 people guhjy rdiaz shigepong zwang

Inferring gene regulatory networks from multiple microarray datasets

Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420.

by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen

posted to microarray network regulatory by frohike on 2007-09-27 16:48:50 as

along with 5 people roys antonkratz jhatrimatri natstreet heliopais

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

BMC Bioinformatics, Vol. 7, No. 1. (02 June 2006), 280.

by David Reiss, Nitin Baliga, Richard Bonneau

posted to biclustering integration network regulatory by frohike on 2006-12-11 10:10:30 as

along with 6 people meanerelk parnell bozdagd surajitray tvdbulck tmmurali

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

Genome Biology, Vol. 7, No. 5. (2006), R36.

by Richard Bonneau, David Reiss, Paul Shannon, et al.Marc Facciotti, Leroy Hood, Nitin Baliga, Vesteinn Thorsson

posted to inference network regulatory by frohike on 2006-12-11 10:08:48 as

along with 7 people and 1 group lawraga ggallone cswinburne dragonrez jfr roys jo_davies Jarman Lab

Computational discovery of gene modules and regulatory networks

Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342.

by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford

posted to bayesian-network modules regulatory by frohike on 2006-10-31 10:43:16 as

along with 16 people and 1 group stharward myzhang wangbo Borelli ggrot dragonrez bayesian wnpx nickluscombe koller karfunkel roys dquest balicea carlk tvdbulck EBI-regulation

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.

Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006), pp. D108-110.

by V. Matys, O. V. Kel-Margoulis, E. Fricke, et al.I. Liebich, S. Land, A. Barre-Dirrie, I. Reuter, D. Chekmenev, M. Krull, K. Hornischer, N. Voss, P. Stegmaier, B. Lewicki-Potapov, H. Saxel, A. E. Kel, E. Wingender

posted to database genes interactions online regulatory by frohike on 2006-10-31 10:32:46 as read

along with 6 people daed humburg daveGerrard troels_marstrand reidy guhjy

Using Bayesian networks to analyze expression data

J Comput Biol, Vol. 7 (2000), pp. 601-20.

by N. Friedman, M. Linial, I. Nachman, D. Pe'er

posted to bayesian-network microarray genetic regulatory by frohike on 2006-10-31 10:05:49 as

Inferring subnetworks from perturbed expression profiles

Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S215-24.

by D. Pe'er, A. Regev, G. Elidan, N. Friedman

posted to bayesian-network microarray genetic network perturbed regulatory by frohike on 2006-10-31 10:05:49 as

Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks

Bioinformatics, Vol. 19 (2003), pp. 2271-2282.

by D. Husmeier

posted to bayesian-network benchmark dynamic regulatory by frohike on 2006-10-31 10:05:49 as

Using prior knowledge to improve genetic network reconstruction from microarray data

In silico biology, Vol. 4 (2004), pp. 335-53.

by P. P. Le, A. Bahl, L. H. Ungar

posted to bayesian-network microarray genetic priors regulatory by frohike on 2006-10-31 10:05:49 as

Principled computational methods for the validation and discovery of genetic regulatory networks

(2001)

by A. J. Hartemink

posted to bayesian-network genetic phd regulatory thesis by frohike on 2006-10-31 10:05:48 as

Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks

PSB, Vol. 9 (2004), pp. 336-347.

by N. Nariai, S. Kim, S. Imoto, S. Miyano

posted to bayesian-network microarray gene regulatory by frohike on 2006-10-31 10:05:47 as

BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.

Bioinformatics (27 September 2006)

by Xiaohui Chen, Ming Chen, Kaida Ning

posted to bayesian-network r regulatory software by frohike on 2006-10-31 10:00:18 as

along with 6 people guhjy wnpx jhatrimatri shigepong ramakris waszak

	Bayesian Network Analysis of Signaling Networks: A Primer [My Copy] Sci. STKE, Vol. 2005, No. 281. (26 April 2005), pl4. by Dana Pe'er posted to bayesian-network gene_network primer regulatory reverse_engineering_gene_networks by frohike on 2009-02-09 16:18:47 as along with 8 people abhishek_tiwari ptrobajo saman_vp tmmurali Borelli ryang wnpx jhatrimatri
	Inferring transcriptional networks by mining 'omics' data [My Copy] Current bioinformatics, Vol. , No. 3. (2006) by T. Van den Bulcke, K. Lemmens, Y. Van de Peer, K. Marchal posted to algorithms network refmanager regulatory review by frohike on 2008-06-03 11:07:53 as
	Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical Gaussian models and Bayesian networks. [My Copy] Bioinformatics (14 July 2006) by Adriano V V. Werhli, Marco Grzegorczyk, Dirk Husmeier posted to bayesian-network benchmark regulatory by frohike on 2008-02-01 10:03:33 as along with 3 people wnpx edwardmorrissey roys
	Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks. [My Copy] Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2271-2282. by D. Husmeier posted to bayesian-network benchmark microarray network regulatory by frohike on 2008-02-01 10:02:41 as along with 3 people Borelli wnpx edwardmorrissey
	Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Chang S. Kim posted to bayesian-network regulatory by frohike on 2008-02-01 10:02:10 as along with 4 people guhjy rdiaz shigepong zwang
	Inferring gene regulatory networks from multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420. by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen posted to microarray network regulatory by frohike on 2007-09-27 16:48:50 as along with 5 people roys antonkratz jhatrimatri natstreet heliopais
	Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (02 June 2006), 280. by David Reiss, Nitin Baliga, Richard Bonneau posted to biclustering integration network regulatory by frohike on 2006-12-11 10:10:30 as along with 6 people meanerelk parnell bozdagd surajitray tvdbulck tmmurali
	The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo [My Copy] Genome Biology, Vol. 7, No. 5. (2006), R36. by Richard Bonneau, David Reiss, Paul Shannon, et al.Marc Facciotti, Leroy Hood, Nitin Baliga, Vesteinn Thorsson posted to inference network regulatory by frohike on 2006-12-11 10:08:48 as along with 7 people and 1 group lawraga ggallone cswinburne dragonrez jfr roys jo_davies Jarman Lab
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to bayesian-network modules regulatory by frohike on 2006-10-31 10:43:16 as along with 16 people and 1 group stharward myzhang wangbo Borelli ggrot dragonrez bayesian wnpx nickluscombe koller karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
	TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006), pp. D108-110. by V. Matys, O. V. Kel-Margoulis, E. Fricke, et al.I. Liebich, S. Land, A. Barre-Dirrie, I. Reuter, D. Chekmenev, M. Krull, K. Hornischer, N. Voss, P. Stegmaier, B. Lewicki-Potapov, H. Saxel, A. E. Kel, E. Wingender posted to database genes interactions online regulatory by frohike on 2006-10-31 10:32:46 as along with 6 people daed humburg daveGerrard troels_marstrand reidy guhjy
	Using Bayesian networks to analyze expression data [My Copy] J Comput Biol, Vol. 7 (2000), pp. 601-20. by N. Friedman, M. Linial, I. Nachman, D. Pe'er posted to bayesian-network microarray genetic regulatory by frohike on 2006-10-31 10:05:49 as
	Inferring subnetworks from perturbed expression profiles [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S215-24. by D. Pe'er, A. Regev, G. Elidan, N. Friedman posted to bayesian-network microarray genetic network perturbed regulatory by frohike on 2006-10-31 10:05:49 as
	Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks [My Copy] Bioinformatics, Vol. 19 (2003), pp. 2271-2282. by D. Husmeier posted to bayesian-network benchmark dynamic regulatory by frohike on 2006-10-31 10:05:49 as
	Using prior knowledge to improve genetic network reconstruction from microarray data [My Copy] In silico biology, Vol. 4 (2004), pp. 335-53. by P. P. Le, A. Bahl, L. H. Ungar posted to bayesian-network microarray genetic priors regulatory by frohike on 2006-10-31 10:05:49 as
	Principled computational methods for the validation and discovery of genetic regulatory networks [My Copy] (2001) by A. J. Hartemink posted to bayesian-network genetic phd regulatory thesis by frohike on 2006-10-31 10:05:48 as
	Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks [My Copy] PSB, Vol. 9 (2004), pp. 336-347. by N. Nariai, S. Kim, S. Imoto, S. Miyano posted to bayesian-network microarray gene regulatory by frohike on 2006-10-31 10:05:47 as
	BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network. [My Copy] Bioinformatics (27 September 2006) by Xiaohui Chen, Ming Chen, Kaida Ning posted to bayesian-network r regulatory software by frohike on 2006-10-31 10:00:18 as along with 6 people guhjy wnpx jhatrimatri shigepong ramakris waszak

frohike's regulatory [17 articles] Export

frohike's tags

breast-cancer	224
microarray	100
bayesian-network	66
microarray_data_analysis	50
ovarian_cancer	50
arraycgh	42
proteomics	42
network	36
database	33
microrna	31
signature	30
prognosis	29
review	25
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integration	22
lung_cancer	22
mirna	22
snp	20
cancer	19
epigenetics	18
human	18
mass_spectrometry	17
methylation	17
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rectal_cancer	16
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cetuximab	13
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metabolomics	13
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signatures	12
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treatment	12
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methylome	11
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priors	10
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