gabe_rosser's library 118 articles Export

	Analysis of membrane-localized binding kinetics with FRAP. [My Copy] European biophysics journal : EBJ, Vol. 37, No. 5. (June 2008), pp. 627-638. by Omer Dushek, Raibatak Das, Daniel Coombs posted to recovery reaction kinetics frap fluorescence diffusion binding analysis by gabe_rosser on 2009-11-19 17:01:35 as
	Improving parameter estimation for cell surface FRAP data. [My Copy] Journal of biochemical and biophysical methods, Vol. 70, No. 6. (24 April 2008), pp. 1224-1231. by Omer Dushek, Daniel Coombs posted to recovery parameter membrane frap fluorescence estimation diffusion by gabe_rosser on 2009-11-19 16:59:13 as
	The DNA binding activity of p53 displays reaction-diffusion kinetics. [My Copy] Biophysical journal, Vol. 91, No. 1. (1 July 2006), pp. 330-342. by Peter Hinow, Carl E. Rogers, Christopher E. Barbieri, Jennifer A. Pietenpol, Anne K. Kenworthy, Emmanuele DiBenedetto posted to recovery reaction protein frap fluorescence dna diffusion binding by gabe_rosser on 2009-11-19 16:54:36 as
	Characterizing fluorescence recovery curves for nuclear proteins undergoing binding events [My Copy] Bulletin of Mathematical Biology, Vol. 66, No. 6. (1 November 2004), pp. 1515-1545. by G. Carrero, E. Crawford, M. Hendzel, G. de Vries posted to recovery reaction modelling frap fluorescence diffusion analysis by gabe_rosser on 2009-11-19 16:38:33 as
	Reduction-of-dimensionality kinetics at reaction-limited cell surface receptors. [My Copy] Biophysical journal, Vol. 66, No. 3 Pt 1. (March 1994), pp. 588-600. by D. Axelrod, M. D. Wang posted to smoluchowski reaction ligand diffusion collins-kimball binding analytical by gabe_rosser on 2009-10-02 18:39:14 as
	Monte Carlo simulation of diffusion and reaction in two-dimensional cell structures. [My Copy] Biophysical journal, Vol. 68, No. 5. (May 1995), pp. 1716-1726. by M. R. Riley, H. M. Buettner, F. J. Muzzio, S. C. Reyes posted to simulation reaction monte lattice dynamics diffusion carlo by gabe_rosser on 2009-10-02 17:33:27 as
	Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico. [My Copy] FEBS letters, Vol. 579, No. 8. (21 March 2005), pp. 1783-1788. by Kouichi Takahashi, Satya Nanda Vel N. Arjunan, Masaru Tomita posted to stochastic simulation signalling reaction modelling dynamics diffusion brownian by gabe_rosser on 2009-09-25 15:14:11 as along with 11 people and 3 groups ddcttrl ocs monocyte biplabbose chrn biosv carmaus dagmar m_j csanford arjunan dIEMoSIRIS MoSi-Rostock compneur
	Multiple ATP Binding Is Required to Stabilize the "Activated" (Clamp Open) Clamp Loader of the T4 DNA Replication Complex [My Copy] J. Biol. Chem., Vol. 283, No. 42. (17 October 2008), pp. 28338-28353. by Paola Pietroni, Peter H. von Hippel posted to replisome replication loader dna clamp atpase by gabe_rosser on 2009-09-14 12:57:41 as
	Single-Molecule Studies Reveal Dynamics of DNA Unwinding by the Ring-Shaped T7 Helicase [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1299-1309. by Daniel S. Johnson, Lu Bai, Benjamin Y. Smith, Smita S. Patel, Michelle D. Wang posted to trap single optical molecule helicase dna by gabe_rosser on 2009-09-14 12:46:27 as along with 1 person and 1 group skoch3 Koch_Lab
	Diffusion of green fluorescent protein in three cell environments in Escherichia coli. [My Copy] Journal of bacteriology, Vol. 188, No. 10. (May 2006), pp. 3442-3448. by Conrad W. Mullineaux, Anja Nenninger, Nicola Ray, Colin Robinson posted to microscopy membrane gfp frap e diffusion cytoplasm confocal coli by gabe_rosser on 2009-08-28 11:37:59 as
	Stochastic simulation of chemical kinetics. [My Copy] Annual review of physical chemistry, Vol. 58, No. 1. (2007), pp. 35-55. by Daniel T. Gillespie posted to stochastic master kinetics equation chemical by gabe_rosser on 2009-08-28 09:06:08 as along with 9 people and 3 groups timflutre fierykylin devinli cannin jlidmar carmaus dbikard pmendes jjray dIEMoSIRIS MoSi-Rostock Centre de Recherches Interdisciplinaires
	Rapid assembly dynamics of the Escherichia coli FtsZ-ring demonstrated by fluorescence recovery after photobleaching. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 5. (5 March 2002), pp. 3171-3175. by Jesse Stricker, Paul Maddox, E. D. Salmon, Harold P. Erickson posted to turnover ftsz frap dynamic by gabe_rosser on 2009-08-28 08:54:07 as
	A role for the juxtamembrane cytoplasm in the molecular dynamics of focal adhesions. [My Copy] PloS one, Vol. 4, No. 1. (2009) by Haguy Wolfenson, Ariel Lubelski, Tamar Regev, Joseph Klafter, Yoav I. Henis, Benjamin Geiger posted to turnover frap focal complex adhesion by gabe_rosser on 2009-08-28 08:51:44 as
	Introduction to the Finite Element Method [My Copy] (01 January 1993) by J. N. Reddy posted to method finite element by gabe_rosser on 2009-08-28 01:24:25 as
	DNA polymerase III accessory proteins. IV. Characterization of chi and psi. [My Copy] The Journal of biological chemistry, Vol. 268, No. 16. (5 June 1993), pp. 11779-11784. by H. Xiao, Z. Dong, M. O'Donnell posted to replisome psi polymerase loader e coli clamp chi bacterial by gabe_rosser on 2009-08-19 18:12:20 as
	Crystal Structure of the Processivity Clamp Loader Gamma (?) Complex of E. coli DNA Polymerase III [My Copy] Cell, Vol. 106, No. 4. (August 2001), pp. 429-441. by D. Jeruzalmi posted to replisome polymerase loader e coli clamp bacterial by gabe_rosser on 2009-08-19 18:09:41 as
	Millisecond timescale slimfield imaging and automated quantification of single fluorescent protein molecules for use in probing complex biological processes [My Copy] Integr. Biol., Vol. 1, No. 10. (2009), pp. 602-612. by Michael Plank, George H. Wadhams, Mark C. Leake posted to widefield tirf slimfield single molecule microscopy fluorescence confocal by gabe_rosser on 2009-08-19 16:21:30 as along with 1 person OliverHarriman
	Variable stoichiometry of the TatA component of the twin-arginine protein transport system observed by in vivo single-molecule imaging [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 40. (7 October 2008), pp. 15376-15381. by Mark C. Leake, Nicholas P. Greene, Rachel M. Godun, et al.Thierry Granjon, Grant Buchanan, Shuyun Chen, Richard M. Berry, Tracy Palmer, Ben C. Berks posted to transport tat stoichiometry stepwise single protein photobleaching molecule by gabe_rosser on 2009-08-18 16:26:39 as along with 2 people OliverHarriman ARobson
	Model for Protein Concentration Gradients in the Cytoplasm [My Copy] Cellular and Molecular Bioengineering, Vol. 1, No. 1. (1 March 2008), pp. 84-92. by Karen Lipkow, David Odde posted to concentration diffusion gradient protein reaction smoldyn stochastic by gabe_rosser on 2009-08-06 08:10:06 as
	Computational methods for diffusion-influenced biochemical reactions. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 15. (1 August 2007), pp. 1969-1977. by Maciej Dobrzynski, Jordi Vidal V. Rodríguez, Jaap A. Kaandorp, Joke G. Blom posted to brownian diffusion dynamics reaction simulation smoldyn stochastic by gabe_rosser on 2009-08-06 08:03:33 as along with 6 people and 1 group jjray ocs m_j balabu dagmar jmccammon McCammon
	Introducing simulated cellular architecture to the quantitative analysis of fluorescent microscopy [My Copy] Progress in Biophysics and Molecular Biology (21 July 2009) by Mark A. Depristo, Lynne Chang, Ronald D. Vale, Shahid M. Khan, Karen Lipkow posted to bacterial chemotaxis chey chez coli diffusion e frap reaction simulation stochastic by gabe_rosser on 2009-08-05 22:37:41 as along with 1 person abhishek_tiwari
	Structured illumination microscopy of a living cell [My Copy] European Biophysics Journal, Vol. 38, No. 6. (1 July 2009), pp. 807-812. by Liisa Hirvonen, Kai Wicker, Ondrej Mandula, Rainer Heintzmann posted to diffaction illumination in limit microscopy structured vivo by gabe_rosser on 2009-08-04 16:57:16 as along with 1 person pmcarlton
	$My PDF rust_06_subdiffractionlimit.pdf$ Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). [My Copy] Nature methods, Vol. 3, No. 10. (09 October 2006), pp. 793-795. by Michael J. Rust, Mark Bates, Xiaowei Zhuang posted to diffraction fluorescence limit microscopy storm by gabe_rosser on 2009-08-04 16:52:51 as along with 11 people and 1 group victorclaessen Sese schmidtm OliverHarriman module marissalee ts3435 paulschlesinger baniel samjlord melting moernerlab
	Imaging Intracellular Fluorescent Proteins at Nanometer Resolution [My Copy] Science, Vol. 313, No. 5793. (15 September 2006), pp. 1642-1645. by Eric Betzig, George H. Patterson, Rachid Sougrat, et al.O. Wolf Lindwasser, Scott Olenych, Juan S. Bonifacino, Michael W. Davidson, Jennifer Lippincott-Schwartz, Harald F. Hess posted to fluorescence localization microscopy palm photoactivatable by gabe_rosser on 2009-08-04 16:49:51 as along with 13 people and 1 group victorclaessen Sese schmidtm doktornoe OliverHarriman ts3435 marissalee baniel samjlord dayjm eyliu lechristophe melting moernerlab
	Adaptive optics in microscopy. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 365, No. 1861. (15 December 2007), pp. 2829-2843. by Martin J. Booth posted to adaptive optics by gabe_rosser on 2009-08-04 16:40:26 as
	Practical implementation of adaptive optics in multiphoton microscopy. [My Copy] Optics express, Vol. 11, No. 10. (19 May 2003), pp. 1123-1130. by P. Marsh, D. Burns, J. Girkin posted to 3d adaptive microscopy multiphoton optics by gabe_rosser on 2009-08-04 16:21:32 as
	Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 24. (15 June 2004), pp. 8936-8941. by Achillefs N. Kapanidis, Nam Ki K. Lee, Ted A. Laurence, Sören Doose, Emmanuel Margeat, Shimon Weiss posted to alex alternating excitation laser molecule single spectroscopy by gabe_rosser on 2009-08-04 16:15:53 as along with 2 people yusdi toerst
	Location and mobility of twin arginine translocase subunits in the Escherichia coli plasma membrane. [My Copy] The Journal of biological chemistry, Vol. 280, No. 18. (6 May 2005), pp. 17961-17968. by Nicola Ray, Anja Nenninger, Conrad W. Mullineaux, Colin Robinson posted to coli confocal e frap microscopy protein system tat transport by gabe_rosser on 2009-08-04 16:11:38 as
	Probing the dynamics of photosynthetic membranes with fluorescence recovery after photobleaching [My Copy] Trends in Plant Science, Vol. 7, No. 6. (1 June 2002), pp. 237-240. by C. Mullineaux posted to confocal diffusion fluorescence frap membrane microscopy photobleaching recovery by gabe_rosser on 2009-08-04 16:03:54 as
	Light Microscopy Techniques for Live Cell Imaging [My Copy] Science, Vol. 300, No. 5616. (4 April 2003), pp. 82-86. by David J. Stephens, Victoria J. Allan posted to fluorescence imaging in microscopy optical techniques vivo by gabe_rosser on 2009-08-04 15:41:36 as along with 10 people and 1 group Sese schmidtm OliverHarriman abhishek_tiwari marissalee ts3435 lmcf cherrie samjlord electricsbm moernerlab
	Modulation of glutamate mobility reveals the mechanism underlying slow-rising AMPAR EPSCs and the diffusion coefficient in the synaptic cleft. [My Copy] Neuron, Vol. 42, No. 5. (10 June 2004), pp. 757-771. by T. A. Nielsen, D. A. DiGregorio, R. A. Silver posted to diffusion glutamate mobility modelling simulation by gabe_rosser on 2009-07-08 10:27:44 as
	Hybrid simulations of stochastic reaction-diffusion processes for modeling intracellular signaling pathways [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 74, No. 5. (2006) by K. H. Chiam, Chee M. Tan, Vipul Bhargava, Gunaretnam Rajagopal posted to diffusion hybrid reaction simulation stochastic by gabe_rosser on 2009-06-03 16:41:28 as along with 1 person cottrell
	Dynamic Computer Simulation of Concentrated Hard-Sphere Suspensions. 1. Simulation Technique and Mean Square Displacement Data. [My Copy] Physica A, Vol. 166, No. 3. (1990) by B. Cichocki, K. Hinsen posted to brownian diffusion dynamics simulation by gabe_rosser on 2009-05-12 17:16:06 as
	Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws1 [My Copy] Progress in Biophysics and Molecular Biology*, Vol. 85, No. 2-3. (July 2004), pp. 235-260. by S. Schnell posted to automata carlo cellular crowding dynamics kinetics macromolecular monte reaction simulation by gabe_rosser on 2009-04-24 18:27:18 as along with 5 people and 1 group mhellmann m_j schnell ras csanford IU_Informatics_CX
	Intracellular macromolecular mobility measured by fluorescence recovery after photobleaching with confocal laser scanning microscopes. [My Copy] Molecular biology of the cell, Vol. 15, No. 10. (October 2004), pp. 4749-4760. by J. Braga, J. M. Desterro, M. Carmo-Fonseca posted to confocal diffusion fluorescence frap laser mobility model recovery scanning by gabe_rosser on 2009-03-19 14:04:33 as
	A Reaction-Diffusion Model to Study RNA Motion by Quantitative Fluorescence Recovery after Photobleaching [My Copy] Biophys. J., Vol. 92, No. 8. (15 April 2007), pp. 2694-2703. by Jose Braga, James G. Mcnally, Maria Carmo-Fonseca posted to binding diffusion fluorescence frap model reaction recovery rna by gabe_rosser on 2009-03-19 13:53:11 as along with 1 person cottrell
	Investigation of binding mechanisms of nuclear proteins using confocal scanning laser microscopy and FRAP [My Copy] Journal of Theoretical Biology, Vol. 253, No. 4. (21 August 2008), pp. 755-768. by George D. Tsibidis, Jorge Ripoll posted to binding diffusion fluorescence frap model reaction recovery simulation by gabe_rosser on 2009-03-19 13:45:04 as
	Quantitative interpretation of binding reactions of rapidly diffusing species using fluorescence recovery after photobleaching [My Copy] Journal of Microscopy, Vol. 233, No. 3., pp. 384-390. by G. D. Tsibidis posted to fluorescence frap model modelling recovery simulation by gabe_rosser on 2009-03-19 13:41:23 as
	Visualization of the movement of single histidine kinase molecules in live Caulobacter cells [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 45. (9 November 2004), pp. 15921-15926. by J. Deich, E. M. Judd, H. H. Mcadams, W. E. Moerner posted to bacteria diffusion membrane particle simulation single stochastic tracking by gabe_rosser on 2009-03-19 13:39:12 as
	Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation [My Copy] Nature, Vol. 444, No. 7117., pp. 387-390. by Remus T. Dame, Maarten C. Noom, Gijs J. L. Wuite posted to bacterial chromosome by gabe_rosser on 2009-03-03 23:09:47 as
	Structure of Hexameric DnaB Helicase and Its Complex with a Domain of DnaG Primase [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 459-463. by Scott Bailey, William K. Eliason, Thomas A. Steitz posted to dnab dnag helicase primase structure by gabe_rosser on 2009-03-03 23:06:45 as
	Two-state model for helicase translocation and unwinding of nucleic acids [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 6. (2008) by Ashok Garai, Debashish Chowdhury, M. D. Betterton posted to dna helicase mechanism unwinding by gabe_rosser on 2009-03-03 23:03:09 as
	Opening of nucleic-acid double strands by helicases: Active versus passive opening [My Copy] Physical Review E, Vol. 71, No. 1. (19 January 2005), 011904. by M. D. Betterton, Frank Jülicher posted to active dna helicase mechanism passive by gabe_rosser on 2009-03-03 23:00:18 as
	Quantitative Analysis of Binding of Single-Stranded DNA by Escherichia coli DnaB Helicase and the DnaB.DnaC Complex† [My Copy] Biochemistry, Vol. 45, No. 38. (2006), pp. 11505-11513. by Subhasis B. Biswas, Esther E. Biswas-Fiss posted to coli dnab dnac e helicase ssdna by gabe_rosser on 2009-03-03 22:47:53 as
	Fluorescent single-stranded DNA binding protein as a probe for sensitive, real-time assays of helicase activity. [My Copy] Biophysical journal, Vol. 95, No. 7. (October 2008), pp. 3330-3339. by M. S. Dillingham, K. L. Tibbles, J. L. Hunter, J. C. Bell, S. C. Kowalczykowski, M. R. Webb posted to coli e helicase ssb ssdna by gabe_rosser on 2009-03-03 22:46:29 as
	The rotary motor of bacterial flagella. [My Copy] Annu Rev Biochem, Vol. 72 (2003), pp. 19-54. by H. C. Berg posted to bacterial flagellar motor rotor by gabe_rosser on 2009-02-24 19:27:10 as along with 3 people chrn choonpeng kdesmond
	The random walk's guide to anomalous diffusion: a fractional dynamics approach [My Copy] Physics Reports, Vol. 339, No. 1. (December 2000), pp. 1-77. by R. Metzler posted to anomalous diffusion by gabe_rosser on 2009-02-04 15:30:22 as along with 7 people and 1 group gi0rgi0ne tjpp 6rheology ansobol Borelli sobolevnrm ARobson baker-group
	The internal workings of a DNA polymerase clamp-loading machine. [My Copy] The EMBO journal, Vol. 18, No. 3. (1 February 1999), pp. 771-783. by J. Turner, M. M. Hingorani, Z. Kelman, M. O'Donnell posted to clamp coli e loader replisome by gabe_rosser on 2009-01-23 10:55:07 as
	Assembly of a chromosomal replication machine: two DNA polymerases, a clamp loader, and sliding clamps in one holoenzyme particle. II. Intermediate complex between the clamp loader and its clamp. [My Copy] The Journal of biological chemistry, Vol. 270, No. 22. (2 June 1995), pp. 13358-13365. by V. Naktinis, R. Onrust, L. Fang, M. O'Donnell posted to beta clamp coli e loader replisome by gabe_rosser on 2009-01-23 10:52:24 as
	The bacterial replisome: back on track? [My Copy] Molecular Microbiology, Vol. 69, No. 6. (September 2008), pp. 1341-1348. by Bates, David posted to bacterial coli e factory model replisome spooling tracking by gabe_rosser on 2009-01-20 20:30:27 as

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diffusion	38
coli	25
e	25
bacterial	23
replisome	23
fluorescence	21
frap	21
simulation	20
recovery	17
dna	15
reaction	15
flagellar	14
motor	14
stochastic	12
microscopy	11
protein	11
binding	10
clamp	9
dynamics	9
model	8
single	8
membrane	7
molecule	7
polymerase	7
analysis	6
brownian	6
carlo	6
helicase	6
loader	6
mechanism	6
modelling	6
monte	6
turnover	6
confocal	5
fluorescent	5
assembly	4
chromosome	4
cytoplasm	4
in	4
self	4
structure	4
vivo	4
anomalous	3
beta	3
cryo	3
dnax	3
electron-microscopy	3
exchange	3
kinetics	3
mobility	3
replication	3
ssb	3
transport	3
adaptive	2
cellular	2
chaperone	2
chemotaxis	2
chey	2
chez	2
chi	2
dnab	2
dnag	2
dnan	2
element	2
epsilon	2
estimation	2
factory	2
finite	2
imaging	2
laser	2
limit	2
localization	2
optical	2
optics	2
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psi	2
rotor	2
smoldyn	2
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tat	2
theta	2
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3d	1
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cell	1
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tau	1
techniques	1
tirf	1
topoiv	1
trap	1
unwinding	1
viscosity	1
widefield	1

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