gbart's Thornton:J [44 articles] Export

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	A template search reveals mechanistic similarities and differences in beta-ketoacyl (KAS) synthases and related enzymes. [My Copy] Proteins, Vol. 52, No. 3. (Aug 2003) by J. H. Dawe, C. T. Porter, J. M. Thornton, A. B. Tabor edited by 2003/07/17 05:00 posted to enzyme mechanism template by gbart on 2005-11-11 16:23:16 as
	LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. [My Copy] Protein Eng, Vol. 8, No. 2. (1995), pp. 127-34. by A. C. Wallace, R. A. Laskowski, J. M. Thornton posted to interactions protein_ligand software by gbart on 2005-11-11 16:23:16 as
	Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases. [My Copy] Protein Sci, Vol. 5, No. 6. (1996), pp. 1001-13. by A. C. Wallace, R. A. Laskowski, J. M. Thornton posted to algorithm catalytic_triad template by gbart on 2005-11-11 16:23:16 as
	TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites. [My Copy] Protein Sci, Vol. 6, No. 11. (1997), pp. 2308-23. by A. C. Wallace, N. Borkakoti, J. M. Thornton posted to active_sites algorithm catalytic_triad template by gbart on 2005-11-11 16:23:16 as
	Conservation Helps to Identify Biologically Relevant Crystal Contacts [My Copy] J Mol Biol, Vol. 313, No. 2. (2001), pp. 399-416. by W. S. J. Valdar, J. M. Thornton posted to crystal_contacts sequence_conservation by gbart on 2005-11-11 16:23:16 as
	Plasticity of enzyme active sites. [My Copy] Trends Biochem Sci, Vol. 27, No. 8. (2002), pp. 419-26. by A. E. Todd, C. A. Orengo, J. M. Thornton posted to active_sites enzyme plasticity by gbart on 2005-11-11 16:23:16 as
	Sequence and structural differences between enzyme and nonenzyme homologs. [My Copy] Structure (Camb), Vol. 10, No. 10. (2002) by A. E. Todd, C. A. Orengo, J. M. Thornton edited by 2002/10/16 04:00 posted to enz-nonenz seq_struct_function structure_analysis by gbart on 2005-11-11 16:23:16 as
	Bioinformatics: Genes, Proteins & Computers [My Copy] (2003), pp. 151-174. by A. E. Todd edited by C. A. Orengo, D. T. Jones, J. M. Thornton posted to book_chapter by gbart on 2005-11-11 16:23:16 as
	Evolution of protein function, from a structural perspective. [My Copy] Curr Opin Chem Biol, Vol. 3, No. 5. (1999), pp. 548-56. by A. E. Todd, C. A. Orengo, J. M. Thornton posted to enzyme evolution struct_function by gbart on 2005-11-11 16:23:16 as
	Evolution of function in protein superfamilies, from a structural perspective. [My Copy] J Mol Biol, Vol. 307, No. 4. (2001), pp. 1113-43. by A. E. Todd, C. A. Orengo, J. M. Thornton posted to struct_function enzyme evolution protein_families by gbart on 2005-11-11 16:23:16 as
	The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data [My Copy] Nucleic Acids Research (2004) by C. T. Porter, G. J. Bartlett, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:16 as
	Protein superfamilies and domain superfolds. [My Copy] Nature, Vol. 372, No. 6507. (1994), pp. 631-4. by C. A. Orengo, D. T. Jones, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:16 as
	The \be/\al$_8$ glycosidases: sequence and structure analyses suggest distant evolutionary relationships. [My Copy] Protein Eng, Vol. 14, No. 11. (2001), pp. 845-55. by N. Nagano, C. T. Porter, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:16 as
	One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. [My Copy] J Mol Biol, Vol. 321, No. 5. (2002), pp. 741-65. by N. Nagano, C. A. Orengo, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:16 as
	Satisfying hydrogen bonding potential in proteins. [My Copy] J Mol Biol, Vol. 238, No. 5. (1994), pp. 777-93. by I. K. Mcdonald, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	Protein folds and functions. [My Copy] Structure, Vol. 6, No. 7. (1998), pp. 875-84. by A. C. Martin, C. A. Orengo, E. G. Hutchinson, et al.S. Jones, M. Karmirantzou, R. A. Laskowski, J. B. Mitchell, C. Taroni, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	PROCHECK: a program to check the stereochemical quality of protein structures [My Copy] J. Appl. Cryst., Vol. 26 (1993), pp. 283-291. by R. A. Laskowski, M. W. Macarthur, D. S. Moss, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	Protein clefts in molecular recognition and function. [My Copy] Protein Sci, Vol. 5, No. 12. (1996), pp. 2438-52. by R. A. Laskowski, N. M. Luscombe, M. B. Swindells, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	From Protein Structure to Biochemical Function? [My Copy] Journal of Structural and Functional Genomics, Vol. 4 (2003), pp. 167-177. by R. A. Laskowski, J. D. Watson, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	PROMOTIF: a program to identify and analyze structural motifs in proteins. [My Copy] Protein Sci, Vol. 5, No. 2. (1996), pp. 212-20. by E. G. Hutchinson, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	'NACCESS', Computer Program, Department of Biochemistry and Molecular Biology, University College London. [My Copy] (1993) by S. Hubbard, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	PQS: a protein quaternary structure file server. [My Copy] Trends Biochem Sci, Vol. 23, No. 9. (1998), pp. 358-61. by K. Henrick, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	Using a neural network and spatial clustering to predict the location of active sites in enzymes. [My Copy] J Mol Biol, Vol. 330, No. 4. (2003), pp. 719-34. by A. Gutteridge, G. J. Bartlett, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	Catalysing new reactions during evolution: economy of residues and mechanism. [My Copy] J Mol Biol, Vol. 331, No. 4. (2003), pp. 829-60. by G. J. Bartlett, N. Borkakoti, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	Analysis of catalytic residues in enzyme active sites. [My Copy] J Mol Biol, Vol. 324, No. 1. (2002) by G. J. Bartlett, C. T. Porter, N. Borkakoti, J. M. Thornton edited by 2002/11/08 04:00 posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. [My Copy] Bioinformatics, Vol. 19, No. 13. (2003), pp. 1644-9. by J. A. Barker, J. M. Thornton posted to bibtex-import by gbart on 2005-11-11 16:23:15 as
	A template search reveals mechanistic similarities and differences in beta-ketoacyl synthases (KAS) and related enzymes. [My Copy] Proteins, Vol. 52, No. 3. (15 August 2003), pp. 427-435. by J. H. Dawe, C. T. Porter, J. M. Thornton, A. B. Tabor posted to catalysis enzyme mechanism template by gbart on 2005-11-11 15:34:52 as
	An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1644-1649. by J. A. Barker, J. M. Thornton posted to jess algorithm struct_function template by gbart on 2005-11-11 15:33:51 as along with 6 people and 2 groups shadowman tjimenez jwm tny siebertm chgjb Radiation_Damage Stressosome
	SCOPEC: a database of protein catalytic domains [My Copy] Bioinformatics, Vol. 20, No. suppl_1. (4 August 2004), pp. i130-136. by Richard A. George, Ruth V. Spriggs, Janet M. Thornton, Bissan Al-Lazikani, Mark B. Swindells posted to cat_res database domains inpharmatica by gbart on 2005-11-11 15:32:40 as along with 5 people robfsouza ucbcjbm pablocarb shung tny
	A Ligand-centric Analysis of the Diversity and Evolution of Protein-Ligand Relationships in E. coli [My Copy] Journal of Molecular Biology, Vol. 347, No. 2. (25 March 2005), pp. 415-436. by Irene Nobeli, Ruth V. Spriggs, Richard A. George, Janet M. Thornton posted to evolution inpharmatica protein_ligand by gbart on 2005-11-11 15:31:33 as along with 4 people mdimmic labedan kuhn bpb
	The complement of enzymatic sets in different species. [My Copy] J Mol Biol, Vol. 349, No. 4. (17 June 2005), pp. 745-763. by S. Freilich, R. V. Spriggs, R. A. George, B. Al-Lazikani, M. Swindells, J. M. Thornton posted to enzyme evolution inpharmatica orthologues by gbart on 2005-11-11 15:28:32 as along with 2 people tny jwm
	ProFunc: a server for predicting protein function from 3D structure [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_2. (1 July 2005), pp. W89-93. by Roman A. Laskowski, James D. Watson, Janet M. Thornton posted to annotation struct_function by gbart on 2005-11-11 15:27:45 as along with 2 people mijogiffin siebertm
	Protein Function Prediction Using Local 3D Templates. [My Copy] J Mol Biol (11 July 2005) by Roman A A. Laskowski, James D D. Watson, Janet M M. Thornton posted to annotation struct_function template by gbart on 2005-11-11 15:26:45 as along with 7 people mdimmic shadowman chrn MaggieYe siebertm yoonk jwm
	Conformational change in substrate binding, catalysis and product release: an open and shut case? [My Copy] FEBS Lett, Vol. 567, No. 1. (1 June 2004), pp. 67-73. by A. Gutteridge, J. Thornton posted to active_sites catalysis conformational_change enzyme reaction by gbart on 2005-11-11 15:25:36 as along with 2 people alexg siebertm
	Conformational Changes Observed in Enzyme Crystal Structures upon Substrate Binding [My Copy] Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 21-28. by A. Gutteridge, J. Thornton posted to active_sites conformational_change enzyme by gbart on 2005-11-11 15:25:00 as along with 8 people and 1 group nickolay boris_aguilar carlosjavierna baaden lna yongzhao alexg noby TSRI_MGL
	Understanding nature's catalytic toolkit. [My Copy] Trends Biochem Sci (5 October 2005) by Alex Gutteridge, Janet M M. Thornton posted to active_sites cat_res enzyme by gbart on 2005-11-11 15:23:51 as along with 12 people and 4 groups krapnik ucbcjbm ana jwm Einat alexg eweaver tny noby siebertm grottenolm sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	Analysis of catalytic residues in enzyme active sites. [My Copy] J Mol Biol, Vol. 324, No. 1. (15 November 2002), pp. 105-121. by G. J. Bartlett, C. T. Porter, N. Borkakoti, J. M. Thornton posted to active_sites cat_res enzyme by gbart on 2005-11-11 15:22:54 as along with 4 people baaden nickolay sriram_s siebertm
	Inferring protein function from structure. [My Copy] Methods Biochem Anal, Vol. 44 (2003), pp. 387-407. by G. J. Bartlett, A. E. Todd, J. M. Thornton posted to struct_function by gbart on 2005-11-11 15:22:24 as along with 1 person janasont
	Using a neural network and spatial clustering to predict the location of active sites in enzymes. [My Copy] J Mol Biol, Vol. 330, No. 4. (18 July 2003), pp. 719-734. by A. Gutteridge, G. J. Bartlett, J. M. Thornton posted to active_sites cat_res enzyme neural_network by gbart on 2005-11-11 15:19:56 as along with 7 people and 1 group ramiro2k chrn Einat alexg eweaver sriram_s tjimenez structural_bioinformatics
	Catalysing new reactions during evolution: economy of residues and mechanism. [My Copy] J Mol Biol, Vol. 331, No. 4. (22 August 2003), pp. 829-860. by G. J. Bartlett, N. Borkakoti, J. M. Thornton posted to cat_res enzyme evolution mechanism by gbart on 2005-11-11 15:18:28 as along with 2 people nickolay jwm
	The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D129-133. by Craig T. Porter, Gail J. Bartlett, Janet M. Thornton posted to cat_res csa database enzyme by gbart on 2005-11-11 15:17:47 as along with 12 people and 2 groups barmak7282 ucbcjbm pablocarb tjimenez baaden chrn jwm tny sriram_s massivemayhem siebertm grottenolm Radiation_Damage Stressosome
	Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families. [My Copy] J Mol Biol, Vol. 347, No. 3. (1 April 2005), pp. 565-581. by J. W. Torrance, G. J. Bartlett, C. T. Porter, J. M. Thornton posted to cat_res enzyme template by gbart on 2005-11-11 15:17:15 as along with 4 people and 1 group chrn Einat alexg jwm structural_bioinformatics
	Effective function annotation through catalytic residue conservation. [My Copy] Proc Natl Acad Sci U S A (21 July 2005) by Richard A A. George, Ruth V V. Spriggs, Gail J J. Bartlett, et al.Alex Gutteridge, Malcolm W W. Macarthur, Craig T T. Porter, Bissan Al-Lazikani, Janet M M. Thornton, Mark B B. Swindells posted to cat_res annotation function inpharmatica by gbart on 2005-11-11 15:16:05 as along with 5 people and 1 group chrn Einat alexg tny bilab structural_bioinformatics
	MACiE: a database of enzyme reaction mechanisms. [My Copy] Bioinformatics (27 September 2005) by Gemma L L. Holliday, Gail J J. Bartlett, Daniel E E. Almonacid, et al.Noel M M. O'boyle, Peter Murray-Rust, Janet M M. Thornton, John B O B. Mitchell posted to catalysis database enzyme macie mechanism reaction by gbart on 2005-11-11 15:15:06 as along with 5 people eweaver tny ucbcjbm grottenolm gemmalholliday

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bibtex-import	163
enzyme	43
mechanism	30
crystal_structure	16
evolution	13
correlated_mutations	12
cat_res	11
statistical_coupling	10
active_sites	9
struct_function	9
template	9
protein_folding	9
algorithm	8
database	6
annotation	5
structure_analysis	5
catalysis	5
fold_recognition	5
inpharmatica	4
phi_analysis	4
function	4
mutation	4
threading	3
allostery	3
seq_struct_function	3
protein_ligand	3
catalytic_triad	3
book_chapter	3
ts_analogue	3
plasticity	2
peptidase	2
minset	2
homology	2
hydrolase	2
reaction	2
protein_families	2
lyase	2
kinase	2
fold_discrimination	2
conformational_change	2
epimerase	2
structure_comparison	2
software	2
ligase	2
prediction	2
alignment	2
enz-nonenz	2
struct_func	2
phospholipase	2
glu	2
evolutionary_trace	2
m_genitalium	2
transferase	2
luca	2
neural_network	2
isomerase	1
tyr	1
molecular_dynamics	1
restraints	1
qm	1
cofactor	1
secondary_structure	1
phosphatase	1
hydratase	1
pdb	1
knots	1
protein_design	1
markov_model	1
crystal_contacts	1
homologue_detection	1
statistical_significance	1
sequence_conservation	1
topology	1
csa	1
leu	1
glucosidase	1
fff	1
tim_barrel	1
pattern_matching	1
superfamily	1
shannon_entropy	1
deaminase	1
ramble	1
protein	1
site_directed_mutagenesis	1
gly	1
jess	1
fold_refinement	1
pathways	1
sequence_alignment	1
orthologues	1
popcorn	1
decarboxylase	1
arg	1
flexibility	1
dehydrogenase	1
solv_acc	1
macie	1
go	1
domains	1
sprek	1
structure_prediction	1
3d_contacts	1
simulation	1
beta_lactamase	1
recruitment	1
aldolase	1
structure_classification	1
hydrogen_bonding	1
molecular_recognition	1
transition_state	1
racemase	1
gene_duplication	1
furball	1
protein_stability	1
chemical_modification	1
evolutionary_information	1
interactions	1
h_influenzae	1
nmr	1
hydrogen_tunnelling	1
gpcr	1
strutural_trees	1
pints	1
functional_sites	1
asp	1

gbart's Thornton:J [44 articles] Export

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