gbart's watchlist [at least 200 articles] Export

Recent papers matching gbart's watchlist criteria

	Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli [My Copy] Molecular Systems Biology, Vol. 3 (10 July 2007), 119. by Robert Schuetz, Lars Kuepfer, Uwe Sauer posted to flux_balance_analysis by alexg on 2007-10-01 06:42:59 as along with 7 people and 1 group yyfwuhan agomez dullhunk fishtank zwang Ema michaelbarton Bioinformatics
	A mathematical model for the branched chain amino acid biosynthetic pathways of Escherichia coli K12. [My Copy] J Biol Chem, Vol. 280, No. 12. (25 March 2005), pp. 11224-11232. by C. R. Yang, B. E. Shapiro, S. P. Hung, E. D. Mjolsness, G. W. Hatfield posted to metabolism regulation by alexg on 2007-10-01 06:02:45 as
	Feedback inhibition of dihydrodipicolinate synthase enzymes by L-lysine. [My Copy] Biol Chem, Vol. 378, No. 3-4. (r 1997), pp. 207-210. by S. Blickling, J. Knäblein posted to metabolism regulation by alexg on 2007-10-01 06:00:58 as
	The aromatic amino acid hydroxylases. [My Copy] Adv Enzymol Relat Areas Mol Biol, Vol. 74 (2000), pp. 235-294. by P. F. Fitzpatrick posted to regulation by alexg on 2007-10-01 05:58:56 as
	The molecular pathway for the allosteric regulation of tryptophan synthase. [My Copy] Biochim Biophys Acta, Vol. 1647, No. 1-2. (11 April 2003), pp. 157-160. by S. Raboni, B. Pioselli, S. Bettati, A. Mozzarelli posted to metabolism regulation by alexg on 2007-10-01 05:55:39 as
	Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis. [My Copy] Annu Rev Genet, Vol. 39 (2005), pp. 47-68. by P. Gollnick, P. Babitzke, A. Antson, C. Yanofsky posted to metabolism regulation by alexg on 2007-10-01 05:55:00 as
	Gut hormones and appetite control. [My Copy] Gastroenterology, Vol. 132, No. 6. (May 2007), pp. 2116-2130. by A. M. Wren, S. R. Bloom posted to no-tag by alexg on 2007-10-01 05:51:33 as
	Regulation of blood glucose homeostasis during prolonged exercise. [My Copy] Mol Cells, Vol. 23, No. 3. (30 June 2007), pp. 272-279. by S. H. Suh, I. Y. Paik, K. Jacobs posted to metabolism regulation by alexg on 2007-10-01 05:50:06 as
	Synthesis and function of membrane phosphoinositides in budding yeast, Saccharomyces cerevisiae. [My Copy] Biochimica et biophysica acta, Vol. 1771, No. 3. (March 2007), pp. 353-404. by Thomas Strahl, Jeremy Thorner posted to enzyme regulation by alexg on 2007-10-01 05:48:40 as
	Global reconstruction of the human metabolic network based on genomic and bibliomic data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 6. (6 February 2007), pp. 1777-1782. by Natalie C. C. Duarte, Scott A. A. Becker, Neema Jamshidi, et al.Ines Thiele, Monica L. L. Mo, Thuy D. D. Vo, Rohith Srivas, Bernhard O. O. Palsson posted to systems_biology by alexg on 2007-10-01 05:33:03 as along with 9 people and 1 group vpenelle peterli schwartzjmc michaelbarton dullhunk guhjy balajis raiyar noby steinmetzlab
	Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 26. by Neema Jamshidi, Bernhard Palsson posted to systems_biology by alexg on 2007-10-01 05:32:43 as along with 2 people leonidus JeremyZucker
	Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data. [My Copy] J Biol Chem, Vol. 282, No. 39. (28 September 2007), pp. 28791-28799. by Y. K. Oh, B. O. Palsson, S. M. Park, C. H. Schilling, R. Mahadevan posted to systems_biology by alexg on 2007-10-01 05:32:28 as along with 8 people and 1 group JeremyZucker coela schwartzjmc aschmeis jholder michaelbarton lflorez hryk MetabolicModeling
	Control theory of regulatory cascades. [My Copy] J Theor Biol, Vol. 153, No. 2. (21 November 1991), pp. 255-285. by D. Kahn, H. V. Westerhoff posted to metabolism by alexg on 2007-09-14 03:20:32 as
	Systems biology. Tracing life's circuitry. [My Copy] Science, Vol. 302, No. 5651. (5 December 2003), pp. 1646-1649. by E. Pennisi posted to systems_biology by alexg on 2007-08-31 05:05:47 as along with 2 people Scis0000002 wnpx
	Bow ties, metabolism and disease [My Copy] Trends in Biotechnology, Vol. 22, No. 9. (September 2004), pp. 446-450. by Marie Csete, John Doyle posted to metabolism systems_biology by alexg on 2007-08-24 06:10:59 as along with 1 person and 2 groups rhem1224 TCR_Signaling SysbioMPI-TCells
	An excitable gene regulatory circuit induces transient cellular differentiation. [My Copy] Nature, Vol. 440, No. 7083. (23 March 2006), pp. 545-550. by Gürol M. Süel, Jordi Garcia-Ojalvo, Louisa M. Liberman, Michael B. Elowitz posted to synthetic_biology by alexg on 2007-08-23 07:19:20 as along with 14 people and 1 group yyfwuhan ashishanand megraw dswan rklancer madhadron balabu nickluscombe comb dbikard mhucka margaritis paurue jjray EBI-regulation
	A synthetic gene–metabolic oscillator [My Copy] Nature, Vol. 435, No. 7038., pp. 118-122. by Eileen Fung, Wilson W. Wong, Jason K. Suen, Thomas Bulter, Sun-Gu Lee, James C. Liao posted to synthetic_biology by alexg on 2007-08-23 07:19:09 as along with 5 people stasaki rklancer bayesian balabu johncumbers
	Modular approaches to expanding the functions of living matter [My Copy] Nat Chem Biol, Vol. 2, No. 6. (June 2006), pp. 304-311. by Jason W. Chin posted to synthetic_biology by alexg on 2007-08-23 07:09:49 as
	Integration of metabolome data with metabolic networks reveals reporter reactions. [My Copy] Mol Syst Biol, Vol. 2 (2006) by T. Cakir, K. R. Patil, Z. Onsan, K. O. Ulgen, B. Kirdar, J. Nielsen posted to metabolism systems_biology by alexg on 2007-08-15 09:08:12 as
	Uncovering transcriptional regulation of metabolism by using metabolic network topology [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 8. (22 February 2005), pp. 2685-2689. by Kiran R. Patil, Jens Nielsen posted to metabolism systems_biology by alexg on 2007-08-15 09:07:09 as along with 2 people and 1 group kukki raiyar steinmetzlab
	Global metabolic changes following loss of a feedback loop reveal dynamic steady states of the yeast metabolome. [My Copy] Metab Eng, Vol. 9, No. 1. (30 June 2006), pp. 8-20. by Peng Lu, Anupama Rangan, Sherwin Y. Y. Chan, Dean R. R. Appling, David W. W. Hoffman, Edward M. M. Marcotte posted to allostery regulation by alexg on 2007-08-09 06:35:01 as along with 1 person dbikard
	Systems biology, metabolic modelling and metabolomics in drug discovery and development. [My Copy] Drug discovery today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092. by Douglas B. Kell posted to metabolism systems_biology by alexg on 2007-08-06 06:27:02 as along with 13 people and 2 groups peterli flbarroso schwartzjmc egonw irenas nicklynch dullhunk mhucka raiyar fishtank shikin alanrw gemmalholliday steinmetzlab GeneGo
	Current Progress in computational metabolomics [My Copy] Brief Bioinform, Vol. 8, No. 5. (1 September 2007), pp. 279-293. by David S. Wishart posted to metabolism systems_biology by alexg on 2007-08-06 06:24:46 as along with 2 people and 1 group druvus guhjy Bioinformatics
	Underground metabolism. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 20, No. 2. (February 1998), pp. 181-186. by R. D'Ari, J. Casadesús posted to metabolism by alexg on 2007-08-06 06:20:02 as along with 1 person yyfwuhan
	A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. [My Copy] Molecular systems biology, Vol. 3 (26 June 2007), 121. by Adam M. Feist, Christopher S. Henry, Jennifer L. Reed, et al.Markus Krummenacker, Andrew R. Joyce, Peter D. Karp, Linda J. Broadbelt, Vassily Hatzimanikatis, Bernhard O. Palsson posted to flux_balance_analysis systems_biology by alexg on 2007-07-31 07:08:42 as along with 7 people winterstream aheilbut schwartzjmc cjeans hryk michaelbarton JeremyZucker
	Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. [My Copy] Nature, Vol. 429, No. 6991. (3 June 2004), pp. 571-574. by Joseph A. Martens, Lisa Laprade, Fred Winston posted to ncrna yeast by alexg on 2007-07-30 09:13:02 as along with 3 people and 1 group bartjacobse dpollard maralena EisenLab
	Life and reference. [My Copy] Biosystems, Vol. 60, No. 1-3. (y 2001), pp. 123-130. by J. Hoffmeyer posted to biosemiotics by alexg on 2007-07-30 08:58:37 as
	Differential metabolic networks unravel the effects of silent plant phenotypes. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 20. (18 May 2004), pp. 7809-7814. by W. Weckwerth, M. E. Loureiro, K. Wenzel, O. Fiehn posted to metabolism systems_biology by alexg on 2007-07-30 08:09:23 as
	High-throughput metabolic state analysis: the missing link in integrated functional genomics of yeasts. [My Copy] Biochem J, Vol. 388, No. Pt 2. (1 June 2005), pp. 669-677. by S. G. Villas-Bôas, J. F. Moxley, M. Akesson, G. Stephanopoulos, J. Nielsen posted to metabolism systems_biology by alexg on 2007-07-30 08:07:53 as
	Protein interactions from complexes: a structural perspective. [My Copy] Comp Funct Genomics (2007) by L. Hakes, D. L. Robertson, S. G. Oliver, S. C. Lovell posted to networks ppi protein_structure by alexg on 2007-07-30 07:33:04 as along with 2 people marti bicko
	Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript [My Copy] Nature (21 January 2007) by Igor Martianov, Aroul Ramadass, Ana S. Barros, Natalie Chow, Alexandre Akoulitchev posted to metabolism ncrna by alexg on 2007-07-30 06:52:18 as along with 4 people and 2 groups galka8_diploma aprasad maximilianh dchughes G4ID Genetics-of-Gambling
	From genomes to in silico cells via metabolic networks. [My Copy] Curr Opin Biotechnol, Vol. 16, No. 3. (June 2005), pp. 350-355. by I. Borodina, J. Nielsen posted to metabolism systems_biology by alexg on 2007-07-30 06:47:35 as along with 1 person Ema
	A high-resolution map of transcription in the yeast genome [My Copy] PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5320-5325. by Lior David, Wolfgang Huber, Marina Granovskaia, et al.Joern Toedling, Curtis J. Palm, Lee Bofkin, Ted Jones, Ronald W. Davis, Lars M. Steinmetz posted to ncrna transcription yeast by alexg on 2007-07-30 06:27:53 as along with 15 people and 2 groups oannes74 bartjacobse ThomasDOtto coela rdowell waszak tuck eckart_bindewald dpollard entropy raiyar xingxu chasmand guhjy GeeSharpMinor EisenLab steinmetzlab
	Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 11. (14 March 2006), pp. 4192-4197. by M. P. Samanta, W. Tongprasit, H. Sethi, C. S. Chin, V. Stolc posted to ncrna yeast by alexg on 2007-07-30 06:26:32 as along with 2 people eckart_bindewald GeeSharpMinor
	Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (27 March 2006) by Andrew V. Uzilov, Joshua M. Keegan, David H. Mathews posted to ncrna by alexg on 2007-07-30 06:26:05 as along with 5 people and 2 groups rb_india NicholasErho thomaskf marcius eckart_bindewald BioinfoCIPF SGU-CIPF
	Comparative Analysis of Structured RNAs in S. cerevisiae Indicates a Multitude of Different Functions [My Copy] BMC Biology, Vol. 5 (18 June 2007), 25. by Stephan Steigele, Wolfgang Huber, Claudia Stocsits, Peter F. Stadler, Kay Nieselt posted to ncrna yeast by alexg on 2007-07-30 06:22:20 as along with 3 people and 2 groups samgj dpollard andersbj EisenLab microRNA
	The expanding universe of noncoding RNAs. [My Copy] Cold Spring Harb Symp Quant Biol, Vol. 71 (2006), pp. 551-564. by G. J. Hannon, F. V. Rivas, E. P. Murchison, J. A. Steitz posted to ncrna review by alexg on 2007-07-30 05:44:12 as along with 1 person and 1 group andersbj microRNA
	RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1484-1488. by Philipp Kapranov, Jill Cheng, Sujit Dike, et al.David A. Nix, Radharani Duttagupta, Aarron T. Willingham, Peter F. Stadler, Jana Hertel, Jorg Hackermuller, Ivo L. Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R. Gingeras posted to ncrna by alexg on 2007-07-30 05:43:43 as along with 14 people and 4 groups gdb maximilianh GustavoLacerda marcius dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar xingxu EisenLab WetBiology BioinfoCIPF SGU-CIPF
	Noncoding RNAs and Gene Silencing [My Copy] Cell, Vol. 128, No. 4. (23 February 2007), pp. 763-776. by Mikel Zaratiegui, Danielle V. Irvine, Robert A. Martienssen posted to ncrna by alexg on 2007-07-30 05:43:25 as along with 6 people and 2 groups heliopais jiayi369 guhjy dchughes sebastien_vigneau N0131826 G4ID Genetics-of-Gambling
	A noncoding RNA in Saccharomyces cerevisiae is an RNase P substrate. [My Copy] RNA, Vol. 13, No. 5. (May 2007), pp. 682-690. by L. Yang, S. Altman posted to ncrna yeast by alexg on 2007-07-30 05:42:47 as along with 1 person zwang
	Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs [My Copy] Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565. by Jasmina Ponjavic, Chris P. Ponting, Gerton Lunter posted to evolution ncrna by alexg on 2007-07-30 05:42:14 as along with 6 people and 4 groups aprasad dchughes djkt Stew elfar bpcusack Bioinformatics EisenLab G4ID Genetics-of-Gambling
	Genomics: The amazing complexity of the human transcriptome [My Copy] European Journal of Human Genetics, Vol. 13, No. 8. (22 June 2005), pp. 894-897. by Martin C. Frith, Michael Pheasant, John S. Mattick posted to ncrna by alexg on 2007-07-30 05:37:01 as along with 2 people haarcuba cassj
	Accelerating, hyperaccelerating, and decelerating networks. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 72, No. 1 Pt 2. (July 2005) by M. J. Gagen, J. S. Mattick posted to networks by alexg on 2007-07-30 05:36:29 as
	The functional genomics of noncoding RNA. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1527-1528. by John S. Mattick posted to ncrna by alexg on 2007-07-30 05:35:51 as along with 12 people and 8 groups GeeSharpMinor coela biozhang2001 lyongu marcius eckart_bindewald dchughes mtagaya cmm neveaire bsmagic jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF bioinplant SGU-CIPF
	Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function [My Copy] Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 1-5. by Ken C. Pang, Martin C. Frith, John S. Mattick posted to evolution ncrna by alexg on 2007-07-30 05:35:10 as along with 8 people and 5 groups rdowell eluinka cassj marcius eckart_bindewald andersbj dchughes mtagaya microRNA G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
	Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. [My Copy] Genome Res, Vol. 16, No. 1. (January 2006), pp. 11-19. by T. Ravasi, H. Suzuki, K. C. Pang, et al.S. Katayama, M. Furuno, R. Okunishi, S. Fukuda, K. Ru, M. C. Frith, M. M. Gongora, S. M. Grimmond, D. A. Hume, Y. Hayashizaki, J. S. Mattick posted to ncrna by alexg on 2007-07-30 05:34:43 as along with 3 people galka8_diploma mtagaya raylim
	RNA: Networks & Imaging. [My Copy] Mol Syst Biol, Vol. 2 (2006) by M. Kenzelmann, K. Rippe, J. S. Mattick posted to ncrna networks by alexg on 2007-07-30 05:34:10 as
	RNAdb 2.0--an expanded database of mammalian non-coding RNAs. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (1 January 2007) by K. C. Pang, S. Stephen, M. E. Dinger, P. G. Engström, B. Lenhard, J. S. Mattick posted to ncrna by alexg on 2007-07-30 05:33:22 as along with 6 people and 1 group guhjy thomaskf jfr balajis andersbj mtagaya microRNA
	The relationship between non-protein-coding DNA and eukaryotic complexity [My Copy] BioEssays, Vol. 29, No. 3. (2007), pp. 288-299. by Ryan J. Taft, Michael Pheasant, John S. Mattick posted to ncrna by alexg on 2007-07-30 05:32:24 as along with 5 people and 2 groups haarcuba aprasad dchughes cas heliopais G4ID Genetics-of-Gambling
	A new paradigm for developmental biology [My Copy] J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1526-1547. by John S. Mattick posted to development by alexg on 2007-07-30 05:31:39 as along with 4 people operon dullhunk BioNica braingrind

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bibtex-import	163
enzyme	43
mechanism	30
crystal_structure	16
evolution	13
correlated_mutations	12
cat_res	11
statistical_coupling	10
active_sites	9
protein_folding	9
struct_function	9
template	9
algorithm	8
database	6
annotation	5
catalysis	5
fold_recognition	5
structure_analysis	5
function	4
inpharmatica	4
mutation	4
phi_analysis	4
allostery	3
book_chapter	3
catalytic_triad	3
protein_ligand	3
seq_struct_function	3
threading	3
ts_analogue	3
alignment	2
conformational_change	2
enz-nonenz	2
epimerase	2
evolutionary_trace	2
fold_discrimination	2
glu	2
homology	2
hydrolase	2
kinase	2
ligase	2
luca	2
lyase	2
m_genitalium	2
minset	2
neural_network	2
peptidase	2
phospholipase	2
plasticity	2
prediction	2
protein_families	2
reaction	2
software	2
struct_func	2
structure_comparison	2
transferase	2
3d_contacts	1
aldolase	1
arg	1
asp	1
beta_lactamase	1
chemical_modification	1
cofactor	1
crystal_contacts	1
csa	1
deaminase	1
decarboxylase	1
dehydrogenase	1
domains	1
evolutionary_information	1
fff	1
flexibility	1
fold_refinement	1
functional_sites	1
furball	1
gene_duplication	1
glucosidase	1
gly	1
go	1
gpcr	1
h_influenzae	1
homologue_detection	1
hydratase	1
hydrogen_bonding	1
hydrogen_tunnelling	1
interactions	1
isomerase	1
jess	1
knots	1
leu	1
macie	1
markov_model	1
molecular_dynamics	1
molecular_recognition	1
nmr	1
orthologues	1
pathways	1
pattern_matching	1
pdb	1
phosphatase	1
pints	1
popcorn	1
protein	1
protein_design	1
protein_stability	1
qm	1
racemase	1
ramble	1
recruitment	1
restraints	1
secondary_structure	1
sequence_alignment	1
sequence_conservation	1
shannon_entropy	1
simulation	1
site_directed_mutagenesis	1
solv_acc	1
sprek	1
statistical_significance	1
structure_classification	1
structure_prediction	1
strutural_trees	1
superfamily	1
tim_barrel	1
topology	1
transition_state	1
tyr	1

gbart's watchlist [at least 200 articles] Export

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