gdv's library 744 articles Export

	Prediction of Contiguous Regions in the Amniote Ancestral Genome [My Copy] Bioinformatics Research and Applications (2009), pp. 173-185. by Aïda Ouangraoua, Frédéric Boyer, Andrew McPherson, Éric Tannier, Cedric Chauve posted to synteny genome_duplication by gdv on 2009-11-25 11:37:25 as
	Graph-polynomials [My Copy] Advances in Applied Mathematics, Vol. 32, No. 1. (January 2004), pp. 5-9. by W. T. Tutte posted to no-tag by gdv on 2009-11-06 13:58:47 as along with 2 people and 5 groups euclid BarrosH GraphTheory Algorithms metric_embeddings TCS Polytopes
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to next_generation_sequencing by gdv on 2009-11-06 13:57:36 as along with 41 people and 3 groups Geknitics cthachuk hzoltan chvlyl sameersoi hpaces GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne BergmanLab Bioinformatics Journal picks
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to short_reads sequencing by gdv on 2009-10-30 18:04:33 as along with 17 people and 2 groups seb1 pst owenlancaster robertrentzsch oannes74 toszko kiekyon michaelbarton jasontsai sameersoi heliopais druvus GeeSharpMinor Peiyong n00c desany qayub Orengo Group Journal Picks Journal picks
	On recovering syntenic blocks from comparative maps [My Copy] Journal of Combinatorial Optimization, Vol. 18, No. 3. (1 October 2009), pp. 307-318. by Zhixiang Chen, Bin Fu, Minghui Jiang, Binhai Zhu posted to synteny strip by gdv on 2009-10-13 09:11:02 as
	Algorithms for Computing Variants of the Longest Common Subsequence Problem [My Copy] Algorithms and Computation (2006), pp. 399-408. by M. Rahman, Costas Iliopoulos posted to no-tag by gdv on 2009-10-01 21:24:50 as along with 1 person seninp
	Application of Homozygosity Haplotype Analysis to Genetic Mapping with High-Density SNP Genotype Data [My Copy] PLoS ONE, Vol. 4, No. 4. (28 April 2009), e5280. by Haiyan Jiang, Andrew Orr, Duane L. Guernsey, et al.Johane Robitaille, Géraldine Asselin, Mark E. Samuels, Marie-Pierre Dubé posted to identity-by-descent by gdv on 2009-07-21 13:02:45 as along with 2 people jdbowes psique
	Aggregating inconsistent information: Ranking and clustering [My Copy] J. ACM, Vol. 55, No. 5. (2008), pp. 1-27. by Nir Ailon, Moses Charikar, Alantha Newman posted to clustering correlation-clustering by gdv on 2009-07-10 15:57:01 as along with 2 people ausiaso eddymier
	A systematic search for SNPs/haplotypes associated with disease phenotypes using a haplotype-based stepwise procedure [My Copy] BMC Genetics, Vol. 9, No. 1. (2008) by Yin Yang, Shuying S. Li, Jason Chien, Jessica Andriesen, Lue P. Zhao posted to haplotyping by gdv on 2009-06-11 09:18:15 as along with 3 people jsatkosk guhjy pkonings
	Generating samples under a Wright-Fisher neutral model of genetic variation. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. 2. (1 February 2002), pp. 337-338. by Richard R. Hudson posted to haplotyping by gdv on 2009-06-11 09:14:39 as along with 7 people engelhardt druvus renewang jmeppley djkt vplagnol ryanraaum
	Algorithms for Exploring the Space of Gene Tree/Species Tree Reconciliations [My Copy] Comparative Genomics (2008), pp. 1-13. by Jean-Philippe Doyon, Cedric Chauve, Sylvie Hamel posted to gene-trees by gdv on 2009-06-09 14:25:49 as
	Gene Family Evolution by Duplication, Speciation, and Loss [My Copy] Journal of Computational Biology, Vol. 15, No. 8. (October 2008), pp. 1043-1062. by Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk posted to gene-trees by gdv on 2009-06-05 14:44:33 as along with 3 people druvus sriesenfeld nuin
	A 3-approximation algorithm for computing a parsimonious first speciation in the gene duplication model [My Copy] (15 Apr 2009) by Cedric Chauve, Aida Ouangraoua posted to gene-trees by gdv on 2009-06-05 11:03:13 as
	PolyA-DB: a database for mammalian mRNA polyadenylation [My Copy] Nucleic Acids Res., Vol. 33 (2005), pp. D116-D120. by H. Zhang, J. Hu, M. Recce, B. Tian posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:10 as
	Detection and evaluation of intron retention events in the human transcriptome [My Copy] RNA, Vol. 10(5) (2004), pp. 757-65. by P. A. Galante, N. J. Sakabe, Kirschbaum N. Slager, S. J. de Souza posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:10 as
	The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures [My Copy] Genome Res., Vol. 14(3) (2004), pp. 426-441. by Y. Xing, A. Resch, C. Lee posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:10 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res., Vol. 30(17) (2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:10 as
	Low conservation of alternative splicing patterns in the human and mouse genomes [My Copy] Hum. Mol. Genet., Vol. 12(11) (2003), pp. 1313-1320. by R. N. Nurtdinov, I. I. Artamonova, A. A. Mironov, M. S. Gelfand posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:10 as
	A genomic view of alternative splicing [My Copy] Nat. Genet., Vol. 30(1) (2002), pp. 13-19. by B. Modrek, C. Lee posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	Initial sequencing and analysis of the human genome [My Copy] Nature, Vol. 409(6822) (2001), pp. 860-921. by E. S. Lander, L. M. Linton, B. Birren posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	Alternative splicing: multiple control mechanisms and involvement in human disease [My Copy] Trends Genet., Vol. 18(4) (2002), pp. 186-193. by J. F. Caceres, A. R. Kornblihtt posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	Computational analysis of alternative splicing using EST tissue information [My Copy] Genomics, Vol. 80(3) (2002), pp. 326-330. by H. Xie, W. Y. Zhu, A. Wasserman, V. Grebinskiy, A. Olson, L. Mintz posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	GMAP: a genomic mapping and alignment program for mRNA and EST sequence [My Copy] Bioinformatics, Vol. 21, No. 9. (2005), pp. 1859-1875. by Thomas D. Wu, Colin K. Watanabe posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization [My Copy] Nucleic Acids Research, Vol. 34, No. Web-Server-Issue. (2006), pp. 440-443. by Tiziana Castrignanò, Raffaella Rizzi, Ivano G. Talamo, et al.Paolo D. De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	ASPicDB: A database resource for alternative splicing analysis [My Copy] Bioinformatics, Vol. 24, No. 10. (2008), pp. 1300-1304. by Tiziana Castrignanò, M. D'Antonio, Anna Anselmo, et al.Danilo Carrabino, D'Onorio A. De Meo, A. M. D'Erchia, Flavio Licciulli, M. Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, A. Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by P. Bonizzoni, R. Rizzi, G. Pesole posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	A method to detect gene structure and alternative splice sites by agreeing ESTs to a genomic sequence [My Copy] In Proc. WABI 2003, Lectures Notes in Bioinformatics, Vol. 2812 (2003), pp. 63-77. by P. Bonizzoni, G. Pesole, R. Rizzi posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	A method of consolidating and combining EST and mRNA alignments to a genome to enumerate supported splice variants [My Copy] In Proc. WABI 2002, Lectures Notes in Computer Science, Vol. 2452 (2002), pp. 201-209. by R. Wheeler posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	Spidey: a tool for mRNA-to-genomic alignments [My Copy] Genome Res., Vol. 11(11) (2001), pp. 1952-1957. by S. J. Wheelan, D. M. Church, J. M. Ostell posted to alternative-splicing bioinformatics by gdv on 2009-05-29 16:44:09 as
	Introduction to computational molecular biology [My Copy] (1997) by J. Setubal, J. Meidanis posted to no-tag by gdv on 2009-05-29 16:44:09 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res., Vol. 30(17) (2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to no-tag by gdv on 2009-05-29 16:44:09 as
	Introduction to algorithms [My Copy] (1990) by T. H. Cormen, C. E. Leiserson, R. L. Rivest posted to no-tag by gdv on 2009-05-29 16:44:08 as
	Computational complexity [My Copy] (1994) by C. H. Papadimitriou posted to no-tag by gdv on 2009-05-29 16:44:08 as
	A Fast and sensitive algorithm for aligning ESTs to the human genome [My Copy] Journal of Bioinformatics and Computational Biology, Vol. 1(2) (2003), pp. 363-386. by J. Ogasawara, S. Morishita posted to no-tag by gdv on 2009-05-29 16:44:08 as
	PALS db: putative alternative splicing database [My Copy] Nucleic Acids Res., Vol. 30(1) (2002), pp. 186-190. by Y. H. Huang, Y. T. Chen, J. J. Lai, S. T. Yang, U. C. Yang posted to no-tag by gdv on 2009-05-29 16:44:08 as
	Splicing graphs and EST assembly problem [My Copy] Bioinformatics, Vol. 18 Suppl 1 (2002), pp. S181-S188. by S. Heber, M. Alekseyev, S. H. Sze, H. Tang, P. A. Pevzner posted to no-tag by gdv on 2009-05-29 16:44:08 as
	Alternative splicing: increasing diversity in the proteomic world [My Copy] Trends Genet., Vol. 17(2) (2001), pp. 100-107. by B. R. Graveley posted to no-tag by gdv on 2009-05-29 16:44:08 as
	ASAP: the alternative splicing annotation project [My Copy] Nucleic Acids Res., Vol. 31(1) (2003), pp. 101-105. by C. Lee, L. Atanelov, B. Modrek, Y. Xing posted to no-tag by gdv on 2009-05-29 16:44:08 as
	Theoretical analysis of alternative splice forms using computational methods [My Copy] Bioinformatics, Vol. 18 Suppl 2 (2002), pp. S65-S73. by S. Boue, M. Vingron, E. Kriventseva, I. Koch posted to no-tag by gdv on 2009-05-29 16:44:08 as
	SpliceDB: database of canonical and non-canonical mammalian splice sites [My Copy] Nucleic Acids Res., Vol. 29(1) (2001), pp. 255-259. by M. Burset, I. A. Seledtsov, V. V. Solovyev posted to no-tag by gdv on 2009-05-29 16:44:08 as
	EASED: extended alternatively spliced EST database [My Copy] Nucleic Acids Res., Vol. 32 (2004), pp. D70-D74. by H. Pospisil, A. Herrmann, R. H. Bortfeldt, J. G. Reich posted to no-tag by gdv on 2009-05-29 16:44:08 as
	RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression [My Copy] Nucleic Acids Res., Vol. 15(17) (1987), pp. 7155-7174. by M. B. Shapiro, P. Senapathy posted to no-tag by gdv on 2009-05-29 16:44:08 as
	Evaluation of Gene Structure Prediction Programs [My Copy] Genomics, Vol. 34 (1996), pp. 353-357. by M. Burset, R. Guigo posted to no-tag by gdv on 2009-05-29 16:44:08 as
	Analysis of canonical and non-canonical splice sites in mammalian genomes [My Copy] Nucleic Acids Res., Vol. 28(21) (2000), pp. 4364-4375. by M. Burset, I. A. Seledtsov, V. V. Solovyev posted to no-tag by gdv on 2009-05-29 16:44:07 as
	Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus [My Copy] Bioinformatics, Vol. 20(7) (2004), pp. 1157-1169. by V. Brendel, L. Xing, W. Zhu posted to no-tag by gdv on 2009-05-29 16:44:07 as
	Genome-wide detection of alternative splicing in expressed sequences using partial order multiple sequence alignment graphs [My Copy] In Pac. Symp. Biocomput. (2004), pp. 29-41. by C. Grasso, B. Modrek, Y. Xing, C. Lee posted to no-tag by gdv on 2009-05-29 16:44:07 as
	Genome wide identification and classification of alternative splicing based on EST data [My Copy] Bioinformatics, Vol. 20(16) (2004), pp. 2579-2585. by S. Gupta, D. Zink, B. Korn, M. Vingron, S. A. Haas posted to no-tag by gdv on 2009-05-29 16:44:07 as
	ESTGenes: alternative splicing From ESTs in Ensembl [My Copy] Genome Res., Vol. 14 (2004), pp. 976-987. by E. Eyras, M. Caccamo, V. Curwen, M. Clamp posted to no-tag by gdv on 2009-05-29 16:44:07 as
	Computational methods for alternative splicing prediction. [My Copy] Briefings in Functional Genomics and Proteomics Advance, Vol. 5:1 (2006), pp. 46-51. by P. Bonizzoni, R. Rizzi, G. Pesole posted to no-tag by gdv on 2009-05-29 16:44:06 as
	ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. [My Copy] Nucleic Acids Research, Vol. 34, No. Web-Server-Issue. (2006), pp. 440-443. by T. Castrignanò, R. Rizzi, I. G. Talamo, et al.D'Onorio P. De Meo, A. Anselmo, P. Bonizzoni, G. Pesole posted to no-tag by gdv on 2009-05-29 16:44:06 as

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alternative-splicing	16
bioinformatics	16
gene-trees	3
algorithms	2
approximation	2
haplotyping	2
synteny	2
approx-alg	1
clustering	1
complexity	1
correlation-clustering	1
genome_duplication	1
identity-by-descent	1
next_generation_sequencing	1
optimization	1
satisfiability	1
sequencing	1
short_reads	1
strip	1

gdv's library 744 articles Export

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